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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24460 AT1G24460 |
| fragaria_vesca | FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 FvH4_4g24950 |
| malus_domestica | MD13G1107800.v1.1 MD16G1107700.v1.1 |
| prunus_persica | Prupe.1G238600_v2.0.a1 |
| pyrus_communis | pycom01g03020 pycom13g09320 pycom16g09190 |
| rosa_chinensis | RchiOBHm_Chr4g0431991 |
| rosa_laevigata | RLG00000006869 |
| rosa_multiflora | Rmu_co8237653.1_g000001 Rmu_co8348741.1_g000001 Rmu_sc0003919.1_g000022 Rmu_sc0004965.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00373540 |
| rosa_rugosa | Rorug04G0254100 |
| rosa_samantha | Rh4AG311400 Rh4BG318500 Rh4CG333800 Rh4DG313400 |
| rosa_wichuraiana | Rw4G027070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 4375, 4759 |
| AatII | GACGTC | 1 cut(s) | 516 |
| Acc16I | TGCGCA | 1 cut(s) | 6461 |
| Acc36I | ACCTGC | 1 cut(s) | 6169 |
| AccB1I | GGYRCC | 2 cut(s) | 68, 2750 |
| AccBSI | CCGCTC | 4 cut(s) | 85, 2748, 3049, 3619 |
| AccI | GTMKAC | 2 cut(s) | 1852, 5513 |
| AccII | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| AccIII | TCCGGA | 1 cut(s) | 457 |
| AclI | AACGTT | 1 cut(s) | 4413 |
| AcoI | YGGCCR | 1 cut(s) | 5505 |
| AcsI | RAATTY | 9 cut(s) | 735, 1168, 1310, 1803, 1814, 5053, 5107, 6208, 6633 |
| AcuI | CTGAAG | 8 cut(s) | 1676, 1752, 2334, 2598, 3168, 4113, 4635, 6555 |
| AcyI | GRCGYC | 2 cut(s) | 69, 513 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 88, 457, 691, 773, 1030, 1223, 6602 |
| AflII | CTTAAG | 1 cut(s) | 11 |
| AflIII | ACRYGT | 4 cut(s) | 585, 1135, 2213, 2456 |
| AgeI | ACCGGT | 1 cut(s) | 523 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 568, 6136 |
| AhlI | ACTAGT | 1 cut(s) | 1129 |
| AjiI | CACGTC | 1 cut(s) | 1152 |
| AjnI | CCWGG | 4 cut(s) | 932, 4170, 4669, 6339 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 572, 604 |
| Alw21I | GWGCWC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2702, 3272, 4067 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 113 |
| Aor13HI | TCCGGA | 1 cut(s) | 457 |
| AoxI | GGCC | 5 cut(s) | 448, 930, 4407, 5505, 6556 |
| ApoI | RAATTY | 9 cut(s) | 735, 1168, 1310, 1803, 1814, 5053, 5107, 6208, 6633 |
| AsiGI | ACCGGT | 1 cut(s) | 523 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 395, 1737, 2796, 3058, 3366, 5557, 6475 |
| AspLEI | GCGC | 6 cut(s) | 71, 259, 261, 352, 5034, 6462 |
| AspS9I | GGNCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| AsuC2I | CCSGG | 3 cut(s) | 482, 1177, 1225 |
| AsuII | TTCGAA | 3 cut(s) | 494, 591, 733 |
| AsuNHI | GCTAGC | 1 cut(s) | 4175 |
| AvaI | CYCGRG | 2 cut(s) | 86, 113 |
| AvaII | GGWCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| AxyI | CCTNAGG | 1 cut(s) | 743 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1710, 1743, 3919, 3952 |
| BamHI | GGATCC | 1 cut(s) | 74 |
| BanI | GGYRCC | 2 cut(s) | 68, 2750 |
| BanII | GRGCYC | 4 cut(s) | 948, 1293, 2243, 4710 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1749, 1781, 1884, 1916, 4320, 4352 |
| BbsI | GAAGAC | 6 cut(s) | 839, 1322, 2604, 3174, 5012, 5769 |
| Bbv12I | GWGCWC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| BbvCI | CCTCAGC | 3 cut(s) | 24, 3951, 4962 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 404, 438, 6122, 6156 |
| BciT130I | CCWGG | 4 cut(s) | 934, 4172, 4671, 6341 |
| BciVI | GTATCC | 2 cut(s) | 643, 3920 |
| BclI | TGATCA | 3 cut(s) | 156, 757, 1231 |
| BcnI | CCSGG | 3 cut(s) | 482, 1177, 1225 |
| BcuI | ACTAGT | 1 cut(s) | 1129 |
| BfmI | CTRYAG | 5 cut(s) | 486, 3524, 4197, 4296, 5960 |
| BfoI | RGCGCY | 2 cut(s) | 72, 353 |
| BfrI | CTTAAG | 1 cut(s) | 11 |
| BfuAI | ACCTGC | 1 cut(s) | 6169 |
| BfuI | GTATCC | 2 cut(s) | 643, 3920 |
| BlpI | GCTNAGC | 3 cut(s) | 4473, 4863, 6324 |
| BmcAI | AGTACT | 1 cut(s) | 4884 |
| Bme1390I | CCNGG | 7 cut(s) | 482, 934, 1177, 1225, 4172, 4671, 6341 |
| Bme18I | GGWCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 568, 6136 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 113 |
| BmgBI | CACGTC | 1 cut(s) | 1152 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| BmiI | GGNNCC | 7 cut(s) | 70, 76, 2752, 2950, 3520, 3521, 6478 |
| BmrFI | CCNGG | 7 cut(s) | 482, 934, 1177, 1225, 4172, 4671, 6341 |
| BmtI | GCTAGC | 1 cut(s) | 4179 |
| BoxI | GACNNNNGTC | 1 cut(s) | 6160 |
| BpiI | GAAGAC | 6 cut(s) | 839, 1322, 2604, 3174, 5012, 5769 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 689, 721, 2159, 2191 |
| BpmI | CTGGAG | 7 cut(s) | 117, 406, 421, 1451, 2169, 3842, 4907 |
| Bpu10I | CCTNAGC | 5 cut(s) | 24, 1076, 3951, 4962, 6225 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 4473, 4863, 6324 |
| Bpu14I | TTCGAA | 3 cut(s) | 494, 591, 733 |
| BpuEI | CTTGAG | 8 cut(s) | 1307, 1577, 1781, 1872, 3698, 5222, 5351, 6294 |
| BpuMI | CCSGG | 3 cut(s) | 482, 1177, 1225 |
| Bsa29I | ATCGAT | 2 cut(s) | 5901, 6504 |
| BsaAI | YACGTR | 3 cut(s) | 1946, 2815, 3385 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2418, 4812, 5822, 6504 |
| BsaHI | GRCGYC | 2 cut(s) | 69, 513 |
| BsaI | GGTCTC | 5 cut(s) | 755, 992, 1214, 4830, 5375 |
| BsaJI | CCNNGG | 8 cut(s) | 233, 480, 860, 933, 3012, 3582, 4170, 6282 |
| BsaWI | WCCGGW | 2 cut(s) | 457, 523 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 572, 602, 902, 932 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 88, 457, 691, 773, 1030, 1223, 6602 |
| Bse118I | RCCGGY | 2 cut(s) | 450, 523 |
| Bse21I | CCTNAGG | 1 cut(s) | 743 |
| Bse3DI | GCAATG | 3 cut(s) | 1533, 2193, 4582 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2418, 4812, 5822, 6504 |
| BseAI | TCCGGA | 1 cut(s) | 457 |
| BseBI | CCWGG | 4 cut(s) | 934, 4172, 4671, 6341 |
| BseCI | ATCGAT | 2 cut(s) | 5901, 6504 |
| BseDI | CCNNGG | 8 cut(s) | 233, 480, 860, 933, 3012, 3582, 4170, 6282 |
| BseJI | GATNNNNATC | 4 cut(s) | 2418, 4812, 5822, 6504 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 88, 457, 691, 773, 1030, 1223, 6602 |
| BseMI | GCAATG | 3 cut(s) | 1533, 2193, 4582 |
| BsePI | GCGCGC | 1 cut(s) | 257 |
| BseRI | GAGGAG | 5 cut(s) | 250, 253, 2873, 3443, 4634 |
| BsgI | GTGCAG | 3 cut(s) | 453, 1505, 4995 |
| Bsh1236I | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| BshFI | GGCC | 5 cut(s) | 450, 932, 4409, 5507, 6558 |
| BshNI | GGYRCC | 2 cut(s) | 68, 2750 |
| BshTI | ACCGGT | 1 cut(s) | 523 |
| BshVI | ATCGAT | 2 cut(s) | 5901, 6504 |
| BsiHKAI | GWGCWC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 113 |
| BsiSI | CCGG | 8 cut(s) | 72, 282, 451, 458, 482, 524, 1177, 1224 |
| BsiWI | CGTACG | 1 cut(s) | 3385 |
| BslFI | GGGAC | 5 cut(s) | 463, 3505, 3731, 5130, 6168 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 88, 457, 691, 773, 1030, 1223, 6602 |
| BsmBI | CGTCTC | 1 cut(s) | 6123 |
| BsmFI | GGGAC | 5 cut(s) | 463, 3505, 3731, 5130, 6168 |
| BsmI | GAATGC | 8 cut(s) | 502, 1405, 2362, 2992, 3294, 3562, 3716, 3753 |
| BsnI | GGCC | 5 cut(s) | 450, 932, 4409, 5507, 6558 |
| Bso31I | GGTCTC | 5 cut(s) | 755, 992, 1214, 4830, 5375 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 113 |
| Bsp119I | TTCGAA | 3 cut(s) | 494, 591, 733 |
| Bsp1286I | GDGCHC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| Bsp13I | TCCGGA | 1 cut(s) | 457 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 4473, 4863, 6324 |
| Bsp19I | CCATGG | 1 cut(s) | 3582 |
| BspANI | GGCC | 5 cut(s) | 450, 932, 4409, 5507, 6558 |
| BspDI | ATCGAT | 2 cut(s) | 5901, 6504 |
| BspEI | TCCGGA | 1 cut(s) | 457 |
| BspFNI | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| BspHI | TCATGA | 1 cut(s) | 3943 |
| BspLI | GGNNCC | 7 cut(s) | 70, 76, 2752, 2950, 3520, 3521, 6478 |
| BspMAI | CTGCAG | 3 cut(s) | 490, 4201, 4300 |
| BspMI | ACCTGC | 1 cut(s) | 6169 |
| BspOI | GCTAGC | 1 cut(s) | 4179 |
| BspQI | GCTCTTC | 5 cut(s) | 144, 431, 1728, 3039, 5949 |
| BspT104I | TTCGAA | 3 cut(s) | 494, 591, 733 |
| BspT107I | GGYRCC | 2 cut(s) | 68, 2750 |
| BspTI | CTTAAG | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 5 cut(s) | 755, 992, 1214, 4830, 5375 |
| BsrBI | CCGCTC | 4 cut(s) | 85, 2748, 3049, 3619 |
| BsrDI | GCAATG | 3 cut(s) | 1533, 2193, 4582 |
| BsrFI | RCCGGY | 2 cut(s) | 450, 523 |
| BssAI | RCCGGY | 2 cut(s) | 450, 523 |
| BssECI | CCNNGG | 8 cut(s) | 233, 480, 860, 933, 3012, 3582, 4170, 6282 |
| BssHII | GCGCGC | 1 cut(s) | 257 |
| BssNI | GRCGYC | 2 cut(s) | 69, 513 |
| BssT1I | CCWWGG | 2 cut(s) | 3582, 6282 |
| Bst2UI | CCWGG | 4 cut(s) | 934, 4172, 4671, 6341 |
| BstACI | GRCGYC | 2 cut(s) | 69, 513 |
| BstAFI | CTTAAG | 1 cut(s) | 11 |
| BstBAI | YACGTR | 3 cut(s) | 1946, 2815, 3385 |
| BstBI | TTCGAA | 3 cut(s) | 494, 591, 733 |
| BstDSI | CCRYGG | 3 cut(s) | 860, 3012, 3582 |
| BstEII | GGTNACC | 1 cut(s) | 4715 |
| BstFNI | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| BstH2I | RGCGCY | 2 cut(s) | 72, 353 |
| BstHHI | GCGC | 6 cut(s) | 71, 259, 261, 352, 5034, 6462 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 191, 344, 447, 1601, 1841, 3863, 4873, 4876, 6466 |
| BstNI | CCWGG | 4 cut(s) | 934, 4172, 4671, 6341 |
| BstNSI | RCATGY | 4 cut(s) | 589, 2217, 2460, 5155 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 6160 |
| BstPI | GGTNACC | 1 cut(s) | 4715 |
| BstSCI | CCNGG | 7 cut(s) | 480, 932, 1175, 1223, 4170, 4669, 6339 |
| BstSFI | CTRYAG | 5 cut(s) | 486, 3524, 4197, 4296, 5960 |
| BstSNI | TACGTA | 3 cut(s) | 1946, 2815, 3385 |
| BstUI | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| BstV2I | GAAGAC | 6 cut(s) | 839, 1322, 2604, 3174, 5012, 5769 |
| BstX2I | RGATCY | 5 cut(s) | 74, 91, 4457, 4813, 5584 |
| BstYI | RGATCY | 5 cut(s) | 74, 91, 4457, 4813, 5584 |
| Bsu15I | ATCGAT | 2 cut(s) | 5901, 6504 |
| Bsu36I | CCTNAGG | 1 cut(s) | 743 |
| BsuI | GTATCC | 2 cut(s) | 643, 3920 |
| BsuRI | GGCC | 5 cut(s) | 450, 932, 4409, 5507, 6558 |
| BsuTUI | ATCGAT | 2 cut(s) | 5901, 6504 |
| BtgI | CCRYGG | 3 cut(s) | 860, 3012, 3582 |
| BtgZI | GCGATG | 1 cut(s) | 440 |
| BtrI | CACGTC | 1 cut(s) | 1152 |
| BtsI | GCAGTG | 8 cut(s) | 1263, 1655, 2491, 2700, 3270, 3325, 4043, 4293 |
| BveI | ACCTGC | 1 cut(s) | 6169 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2702, 3272, 4067 |
| CciI | TCATGA | 1 cut(s) | 3943 |
| CfoI | GCGC | 6 cut(s) | 71, 259, 261, 352, 5034, 6462 |
| Cfr10I | RCCGGY | 2 cut(s) | 450, 523 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| ClaI | ATCGAT | 2 cut(s) | 5901, 6504 |
| CseI | GACGC | 8 cut(s) | 29, 572, 1841, 2327, 2591, 3161, 5499, 5665 |
| CspAI | ACCGGT | 1 cut(s) | 523 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 2188, 2223, 2695, 2730, 3265, 3300, 5484, 5519 |
| DinI | GGCGCC | 1 cut(s) | 70 |
| DraI | TTTAAA | 1 cut(s) | 5164 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 4375, 4759 |
| DriI | GACNNNNNGTC | 2 cut(s) | 568, 6136 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 4375, 4759 |
| EaeI | YGGCCR | 1 cut(s) | 5505 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 568, 6136 |
| EciI | GGCGGA | 2 cut(s) | 300, 5633 |
| Ecl136II | GAGCTC | 4 cut(s) | 946, 1291, 2241, 4708 |
| Eco105I | TACGTA | 3 cut(s) | 1946, 2815, 3385 |
| Eco130I | CCWWGG | 2 cut(s) | 3582, 6282 |
| Eco24I | GRGCYC | 4 cut(s) | 948, 1293, 2243, 4710 |
| Eco31I | GGTCTC | 5 cut(s) | 755, 992, 1214, 4830, 5375 |
| Eco32I | GATATC | 5 cut(s) | 610, 2173, 6390, 6432, 6502 |
| Eco47I | GGWCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| Eco53kI | GAGCTC | 4 cut(s) | 946, 1291, 2241, 4708 |
| Eco57I | CTGAAG | 8 cut(s) | 1676, 1752, 2334, 2598, 3168, 4113, 4635, 6555 |
| Eco81I | CCTNAGG | 1 cut(s) | 743 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 113 |
| Eco91I | GGTNACC | 1 cut(s) | 4715 |
| EcoICRI | GAGCTC | 4 cut(s) | 946, 1291, 2241, 4708 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2949, 3519, 4698 |
| EcoO65I | GGTNACC | 1 cut(s) | 4715 |
| EcoRI | GAATTC | 2 cut(s) | 735, 1814 |
| EcoRII | CCWGG | 4 cut(s) | 932, 4170, 4669, 6339 |
| EcoRV | GATATC | 5 cut(s) | 610, 2173, 6390, 6432, 6502 |
| EcoT14I | CCWWGG | 2 cut(s) | 3582, 6282 |
| EcoT22I | ATGCAT | 4 cut(s) | 1039, 3296, 4654, 6583 |
| EcoT38I | GRGCYC | 4 cut(s) | 948, 1293, 2243, 4710 |
| EgeI | GGCGCC | 1 cut(s) | 70 |
| EheI | GGCGCC | 1 cut(s) | 70 |
| ErhI | CCWWGG | 2 cut(s) | 3582, 6282 |
| Esp3I | CGTCTC | 1 cut(s) | 6123 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1653, 1685, 3759, 3791, 4377, 4409, 5873, 5905 |
| FaqI | GGGAC | 5 cut(s) | 463, 3505, 3731, 5130, 6168 |
| FauI | CCCGC | 7 cut(s) | 37, 90, 327, 331, 2016, 3042, 3612 |
| FbaI | TGATCA | 3 cut(s) | 156, 757, 1231 |
| FblI | GTMKAC | 2 cut(s) | 1852, 5513 |
| FriOI | GRGCYC | 4 cut(s) | 948, 1293, 2243, 4710 |
| FspAI | RTGCGCAY | 1 cut(s) | 6461 |
| FspI | TGCGCA | 1 cut(s) | 6461 |
| GlaI | GCGC | 6 cut(s) | 70, 258, 260, 351, 5033, 6461 |
| GsuI | CTGGAG | 7 cut(s) | 117, 406, 421, 1451, 2169, 3842, 4907 |
| HaeII | RGCGCY | 2 cut(s) | 72, 353 |
| HaeIII | GGCC | 5 cut(s) | 450, 932, 4409, 5507, 6558 |
| HapII | CCGG | 8 cut(s) | 72, 282, 451, 458, 482, 524, 1177, 1224 |
| HgaI | GACGC | 8 cut(s) | 29, 572, 1841, 2327, 2591, 3161, 5499, 5665 |
| HhaI | GCGC | 6 cut(s) | 71, 259, 261, 352, 5034, 6462 |
| Hin1I | GRCGYC | 2 cut(s) | 69, 513 |
| Hin6I | GCGC | 6 cut(s) | 69, 257, 259, 350, 5032, 6460 |
| HinP1I | GCGC | 6 cut(s) | 69, 257, 259, 350, 5032, 6460 |
| HincII | GTYRAC | 5 cut(s) | 1094, 1998, 2505, 3075, 5967 |
| HindII | GTYRAC | 5 cut(s) | 1094, 1998, 2505, 3075, 5967 |
| HindIII | AAGCTT | 4 cut(s) | 1469, 3674, 4517, 5469 |
| HpaI | GTTAAC | 2 cut(s) | 1998, 3075 |
| HpaII | CCGG | 8 cut(s) | 72, 282, 451, 458, 482, 524, 1177, 1224 |
| Hpy99I | CGWCG | 7 cut(s) | 23, 274, 277, 280, 515, 518, 608 |
| HpyCH4IV | ACGT | 8 cut(s) | 513, 1137, 1151, 1945, 2444, 2814, 3384, 4413 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 191, 344, 447, 1601, 1841, 3863, 4873, 4876, 6466 |
| HpySE526I | ACGT | 8 cut(s) | 513, 1137, 1151, 1945, 2444, 2814, 3384, 4413 |
| Hsp92I | GRCGYC | 2 cut(s) | 69, 513 |
| HspAI | GCGC | 6 cut(s) | 69, 257, 259, 350, 5032, 6460 |
| KasI | GGCGCC | 1 cut(s) | 68 |
| KflI | GGGWCCC | 1 cut(s) | 3519 |
| Kpn2I | TCCGGA | 1 cut(s) | 457 |
| KroI | GCCGGC | 1 cut(s) | 450 |
| KroNI | GCCGGC | 1 cut(s) | 452 |
| Ksp22I | TGATCA | 3 cut(s) | 156, 757, 1231 |
| KspAI | GTTAAC | 2 cut(s) | 1998, 3075 |
| LguI | GCTCTTC | 5 cut(s) | 144, 431, 1728, 3039, 5949 |
| MaeII | ACGT | 8 cut(s) | 513, 1137, 1151, 1945, 2444, 2814, 3384, 4413 |
| MbiI | CCGCTC | 4 cut(s) | 85, 2748, 3049, 3619 |
| MfeI | CAATTG | 3 cut(s) | 3867, 5517, 6495 |
| MflI | RGATCY | 5 cut(s) | 74, 91, 4457, 4813, 5584 |
| MhlI | GDGCHC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| Mly113I | GGCGCC | 1 cut(s) | 69 |
| MlyI | GAGTC | 9 cut(s) | 698, 1027, 1336, 1511, 2572, 3142, 4385, 5759, 5846 |
| Mph1103I | ATGCAT | 4 cut(s) | 1039, 3296, 4654, 6583 |
| MroI | TCCGGA | 1 cut(s) | 457 |
| MroNI | GCCGGC | 1 cut(s) | 450 |
| MroXI | GAANNNNTTC | 7 cut(s) | 395, 1737, 2796, 3058, 3366, 5557, 6475 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1154, 1178 |
| MspA1I | CMGCKG | 7 cut(s) | 422, 646, 2015, 2258, 2522, 3092, 3688 |
| MspCI | CTTAAG | 1 cut(s) | 11 |
| MspI | CCGG | 8 cut(s) | 72, 282, 451, 458, 482, 524, 1177, 1224 |
| MspR9I | CCNGG | 7 cut(s) | 482, 934, 1177, 1225, 4172, 4671, 6341 |
| MunI | CAATTG | 3 cut(s) | 3867, 5517, 6495 |
| Mva1269I | GAATGC | 8 cut(s) | 502, 1405, 2362, 2992, 3294, 3562, 3716, 3753 |
| MvaI | CCWGG | 4 cut(s) | 934, 4172, 4671, 6341 |
| MvnI | CGCG | 4 cut(s) | 259, 5034, 5510, 5895 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 191, 344, 447, 1601, 1841, 3863, 4873, 4876, 6466 |
| NaeI | GCCGGC | 1 cut(s) | 452 |
| NarI | GGCGCC | 1 cut(s) | 69 |
| NciI | CCSGG | 3 cut(s) | 482, 1177, 1225 |
| NcoI | CCATGG | 1 cut(s) | 3582 |
| NgoMIV | GCCGGC | 1 cut(s) | 450 |
| NheI | GCTAGC | 1 cut(s) | 4175 |
| NlaIV | GGNNCC | 7 cut(s) | 70, 76, 2752, 2950, 3520, 3521, 6478 |
| NmuCI | GTSAC | 7 cut(s) | 1019, 4080, 4209, 4377, 4715, 4903, 5046 |
| NsbI | TGCGCA | 1 cut(s) | 6461 |
| NsiI | ATGCAT | 4 cut(s) | 1039, 3296, 4654, 6583 |
| NspI | RCATGY | 4 cut(s) | 589, 2217, 2460, 5155 |
| NspV | TTCGAA | 3 cut(s) | 494, 591, 733 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PagI | TCATGA | 1 cut(s) | 3943 |
| PauI | GCGCGC | 1 cut(s) | 257 |
| PciI | ACATGT | 3 cut(s) | 585, 2213, 2456 |
| PciSI | GCTCTTC | 5 cut(s) | 144, 431, 1728, 3039, 5949 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 269, 275 |
| PctI | GAATGC | 8 cut(s) | 502, 1405, 2362, 2992, 3294, 3562, 3716, 3753 |
| PdiI | GCCGGC | 1 cut(s) | 452 |
| PdmI | GAANNNNTTC | 7 cut(s) | 395, 1737, 2796, 3058, 3366, 5557, 6475 |
| Pfl23II | CGTACG | 1 cut(s) | 3385 |
| PflFI | GACNNNGTC | 1 cut(s) | 1326 |
| PfoI | TCCNGGA | 1 cut(s) | 6339 |
| PinAI | ACCGGT | 1 cut(s) | 523 |
| PleI | GAGTC | 9 cut(s) | 698, 1026, 1335, 1511, 2571, 3141, 4384, 5759, 5845 |
| PluTI | GGCGCC | 1 cut(s) | 72 |
| PpsI | GAGTC | 9 cut(s) | 698, 1026, 1335, 1511, 2571, 3141, 4384, 5759, 5845 |
| Ppu21I | YACGTR | 3 cut(s) | 1946, 2815, 3385 |
| PpuMI | RGGWCCY | 3 cut(s) | 2949, 3519, 4698 |
| PscI | ACATGT | 3 cut(s) | 585, 2213, 2456 |
| PshAI | GACNNNNGTC | 1 cut(s) | 6160 |
| Psp124BI | GAGCTC | 4 cut(s) | 948, 1293, 2243, 4710 |
| Psp1406I | AACGTT | 1 cut(s) | 4413 |
| Psp5II | RGGWCCY | 3 cut(s) | 2949, 3519, 4698 |
| Psp6I | CCWGG | 4 cut(s) | 932, 4170, 4669, 6339 |
| PspEI | GGTNACC | 1 cut(s) | 4715 |
| PspGI | CCWGG | 4 cut(s) | 932, 4170, 4669, 6339 |
| PspLI | CGTACG | 1 cut(s) | 3385 |
| PspN4I | GGNNCC | 7 cut(s) | 70, 76, 2752, 2950, 3520, 3521, 6478 |
| PspPI | GGNCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| PspPPI | RGGWCCY | 3 cut(s) | 2949, 3519, 4698 |
| PspXI | VCTCGAGB | 1 cut(s) | 86 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3801, 3833 |
| PstI | CTGCAG | 3 cut(s) | 490, 4201, 4300 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2702, 3272, 4067 |
| PsuI | RGATCY | 5 cut(s) | 74, 91, 4457, 4813, 5584 |
| PsyI | GACNNNGTC | 1 cut(s) | 1326 |
| PteI | GCGCGC | 1 cut(s) | 257 |
| PvuII | CAGCTG | 6 cut(s) | 646, 2015, 2258, 2522, 3092, 3688 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1154, 1178 |
| SacI | GAGCTC | 4 cut(s) | 948, 1293, 2243, 4710 |
| SapI | GCTCTTC | 5 cut(s) | 144, 431, 1728, 3039, 5949 |
| Sau96I | GGNCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| ScaI | AGTACT | 1 cut(s) | 4884 |
| SchI | GAGTC | 9 cut(s) | 698, 1027, 1336, 1511, 2572, 3142, 4385, 5759, 5846 |
| ScrFI | CCNGG | 7 cut(s) | 482, 934, 1177, 1225, 4172, 4671, 6341 |
| SduI | GDGCHC | 6 cut(s) | 948, 1293, 1597, 2243, 4710, 5151 |
| SfcI | CTRYAG | 5 cut(s) | 486, 3524, 4197, 4296, 5960 |
| SfoI | GGCGCC | 1 cut(s) | 70 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| SfuI | TTCGAA | 3 cut(s) | 494, 591, 733 |
| SgrAI | CRCCGGYG | 1 cut(s) | 523 |
| SinI | GGWCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1154, 1178 |
| SnaBI | TACGTA | 3 cut(s) | 1946, 2815, 3385 |
| SpeI | ACTAGT | 1 cut(s) | 1129 |
| SspDI | GGCGCC | 1 cut(s) | 68 |
| SspI | AATATT | 4 cut(s) | 1987, 2848, 3418, 4936 |
| SstI | GAGCTC | 4 cut(s) | 948, 1293, 2243, 4710 |
| StyD4I | CCNGG | 7 cut(s) | 480, 932, 1175, 1223, 4170, 4669, 6339 |
| StyI | CCWWGG | 2 cut(s) | 3582, 6282 |
| TaiI | ACGT | 8 cut(s) | 516, 1140, 1154, 1948, 2447, 2817, 3387, 4416 |
| TatI | WGTACW | 7 cut(s) | 1132, 2313, 2577, 3147, 3982, 4882, 5258 |
| TauI | GCSGC | 5 cut(s) | 322, 347, 350, 422, 5510 |
| TseFI | GTSAC | 7 cut(s) | 1019, 4080, 4209, 4377, 4715, 4903, 5046 |
| Tsp45I | GTSAC | 7 cut(s) | 1019, 4080, 4209, 4377, 4715, 4903, 5046 |
| TspGWI | ACGGA | 2 cut(s) | 3001, 5387 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1326 |
| Vha464I | CTTAAG | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 2949, 3519, 4698 |
| XapI | RAATTY | 9 cut(s) | 735, 1168, 1310, 1803, 1814, 5053, 5107, 6208, 6633 |
| XbaI | TCTAGA | 3 cut(s) | 1333, 2851, 3421 |
| XceI | RCATGY | 4 cut(s) | 589, 2217, 2460, 5155 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 4546, 6029 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XmiI | GTMKAC | 2 cut(s) | 1852, 5513 |
| XmnI | GAANNNNTTC | 7 cut(s) | 395, 1737, 2796, 3058, 3366, 5557, 6475 |
| ZraI | GACGTC | 1 cut(s) | 514 |
| ZrmI | AGTACT | 1 cut(s) | 4884 |
| Zsp2I | ATGCAT | 4 cut(s) | 1039, 3296, 4654, 6583 |