MD13G1136500.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0010405
Physical Location & Seq
Forward (+)
10486490 .. 10488932
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1136500.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGTGTCTCACGGGTACCATGGATTGCTCGAAACTGTCTCCAAGACGTGGAGAGATTTATTGCACAGCTCGGACTATGCCAACTATAAAGCTAGAGAAGAATGGTGCGGCAACTGGCTGTTTGTTCTTACAGAAGGATCTAACAATGAGTGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCATCCTTTGCCAAAGATTCCCACCGTTCATGGTGACTGGAAACACACTGGATTTTCAAGTATTAGTGTCTGCAACCAATTTTTCGTTATTGGAGGGTCCTATGCGCAGAATGATCCACCAGTTCCCCACAAAAAGCCTTTGATAACAAATGAGGTGATGCAGTTTGATCCGTTTAAGAAACAATGGACTAGTGTAGCAAGCATGATCACACCCCGTACTCATTTTGCATGTAGTGTTGTTTCTGATAAAATTTACGTTGCTGGGGGCCGCAACTTATCTTGCACCAGAGGGCTTGCTCTTGCCGAGGTTTATGATCCAGTGGCTAATAAATGGGAGGAGTTGCCTCCAATGCTTAATCCTCAGATGGACTGCTTAGGTTTATCATACAAGGGCAGATTTCATGTTCTCAGTGACCAAGTAGGCCTGCCGGACCAAAATACCTCCGAGGTTTTTACTCCATCCGAGGGAACATGGTGCACCGTGGAAGACATCTGGCCTTTTTCTAGGGCAATGCAATTTGCAGTTCAGGTGATCGGAGATAATCGAATTTATACTGTTGTAGACTGGGGCGAGAGCTTGATTAAAACAAGGGATACTGAAAAGGGAGAGTGGTACAACATAGGCTCAGTTCCATCGGTGATTTTTCATGATCACCCTCGGCAGCTGGAGGCTTTTGGCTACGGTTTTGCTGCCTTAAGACACGAACTTTATGTTCTGGGAGGGAAGGCTCTCAAGTGGGAACAATCTGGTGCCGGGAGGTTTGACATTGTGAAGCTGGGTGTGGTGAGGGTTTGCAACCCCTCGGTTAAGCCATTAAAATGGAGGGAAACTAAACCGATGATTGGGTCAGCTCGTGGCACCGTTATAGGGTGTGCATCCATGGAAGAAGAATCTTCAGTTTTAACACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

365

Amino Acids

41.03

Weight (kDa)

6.19

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 48 - 178 2.1e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 61 - 268 5.7e-16 FKB95, Kelch-repeats domain
Beta-prop_FBX42 PF13415 79 - 174 3.2e-06 FBX42, beta-propeller domain
Beta-prop_Calicin PF13964 121 - 249 1.2e-06 Calicin, beta-propeller domain
Kelch_1 PF01344 132 - 178 6.7e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 15
AccB1I GGYRCC 3 cut(s) 15, 932, 1040
AccB7I CCANNNNNTGG 1 cut(s) 48
AccI GTMKAC 1 cut(s) 744
AciI CCGC 2 cut(s) 108, 451
AclWI GGATC 5 cut(s) 145, 158, 290, 344, 491
AcsI RAATTY 2 cut(s) 432, 729
AcuI CTGAAG 2 cut(s) 189, 1062
AfaI GTAC 3 cut(s) 17, 400, 797
AfiI CCNNNNNNNGG 4 cut(s) 48, 647, 1025, 1050
AflII CTTAAG 1 cut(s) 877
AgsI TTSAA 1 cut(s) 240
AhlI ACTAGT 1 cut(s) 371
AjiI CACGTC 1 cut(s) 48
AluBI AGCT 7 cut(s) 69, 92, 173, 759, 847, 958, 1034
AluI AGCT 7 cut(s) 69, 92, 173, 759, 847, 958, 1034
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 2 cut(s) 12, 43
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 5 cut(s) 145, 158, 290, 344, 491
AoxI GGCC 3 cut(s) 448, 604, 677
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 2 cut(s) 844, 872
ApoI RAATTY 2 cut(s) 432, 729
Asp718I GGTACC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 3 cut(s) 279, 448, 613
AsuC2I CCSGG 1 cut(s) 937
AsuHPI GGTGA 6 cut(s) 227, 349, 724, 827, 832, 979
AvaII GGWCC 2 cut(s) 279, 613
BaeGI GKGCMC 1 cut(s) 662
BanI GGYRCC 3 cut(s) 15, 932, 1040
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 856, 859
BccI CCATC 3 cut(s) 541, 649, 823
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 2 cut(s) 387, 832
BcnI CCSGG 1 cut(s) 937
BcoDI GTCTC 2 cut(s) 12, 43
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 3 cut(s) 93, 372, 687
BfrI CTTAAG 1 cut(s) 877
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 4 cut(s) 109, 451, 845, 873
BlsI GCNGC 4 cut(s) 110, 452, 846, 874
Bme1390I CCNGG 1 cut(s) 937
Bme18I GGWCC 2 cut(s) 279, 613
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 279, 448, 613
BmiI GGNNCC 5 cut(s) 17, 280, 449, 934, 1042
BmrFI CCNGG 1 cut(s) 937
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 3 cut(s) 193, 330, 1067
BmuI ACTGGG 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 675
BpmI CTGGAG 1 cut(s) 869
Bpu10I CCTNAGC 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 1 cut(s) 937
BsaJI CCNNGG 8 cut(s) 19, 486, 627, 645, 663, 839, 984, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 647, 1025, 1050
Bse1I ACTGG 6 cut(s) 119, 224, 235, 302, 500, 752
Bse3DI GCAATG 1 cut(s) 699
BseDI CCNNGG 8 cut(s) 19, 486, 627, 645, 663, 839, 984, 1062
BseGI GGATG 3 cut(s) 184, 641, 1058
BseLI CCNNNNNNNGG 4 cut(s) 48, 647, 1025, 1050
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 3 cut(s) 557, 604, 822
BseNI ACTGG 6 cut(s) 119, 224, 235, 302, 500, 752
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 2 cut(s) 856, 859
BseYI CCCAGC 2 cut(s) 443, 958
BshFI GGCC 3 cut(s) 450, 606, 679
BshNI GGYRCC 3 cut(s) 15, 932, 1040
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 2 cut(s) 611, 936
BslI CCNNNNNNNGG 4 cut(s) 48, 647, 1025, 1050
BsmAI GTCTC 2 cut(s) 12, 43
BsnI GGCC 3 cut(s) 450, 606, 679
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
Bsp19I CCATGG 2 cut(s) 19, 1062
BspACI CCGC 2 cut(s) 108, 451
BspANI GGCC 3 cut(s) 450, 606, 679
BspCNI CTCAG 3 cut(s) 556, 603, 821
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 5 cut(s) 17, 280, 449, 934, 1042
BspPI GGATC 5 cut(s) 145, 158, 290, 344, 491
BspT107I GGYRCC 3 cut(s) 15, 932, 1040
BspTI CTTAAG 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 6 cut(s) 119, 224, 235, 302, 500, 752
BssECI CCNNGG 8 cut(s) 19, 486, 627, 645, 663, 839, 984, 1062
BssMI GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 2 cut(s) 19, 1062
Bst2BI CACGAG 1 cut(s) 1035
Bst4CI ACNGT 7 cut(s) 37, 208, 664, 739, 866, 1045, 1092
BstAFI CTTAAG 1 cut(s) 877
BstAPI GCANNNNNTGC 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 382, 477, 608
BstDEI CTNAG 4 cut(s) 543, 556, 590, 808
BstDSI CCRYGG 3 cut(s) 19, 663, 1062
BstF5I GGATG 3 cut(s) 184, 641, 1058
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 8 cut(s) 140, 166, 298, 352, 390, 499, 717, 835
BstMAI GTCTC 2 cut(s) 12, 43
BstMBI GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
BstMWI GCNNNNNNNGC 2 cut(s) 190, 532
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 935
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 2 cut(s) 856, 859
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 3 cut(s) 450, 606, 679
BtgI CCRYGG 3 cut(s) 19, 663, 1062
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 3 cut(s) 184, 641, 1058
BtsIMutI CAGTG 3 cut(s) 228, 507, 598
Cac8I GCNNGC 3 cut(s) 382, 477, 608
CciI TCATGA 1 cut(s) 829
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 279, 448, 613
Csp6I GTAC 3 cut(s) 16, 399, 796
CviAII CATG 8 cut(s) 20, 212, 385, 411, 584, 654, 830, 1063
CviQI GTAC 3 cut(s) 16, 399, 796
DdeI CTNAG 4 cut(s) 543, 556, 590, 808
DpnI GATC 8 cut(s) 139, 165, 297, 351, 389, 498, 716, 834
DpnII GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
Eco130I CCWWGG 2 cut(s) 19, 1062
Eco147I AGGCCT 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 279, 613
Eco57I CTGAAG 2 cut(s) 189, 1062
EcoO109I RGGNCCY 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 19, 1062
ErhI CCWWGG 2 cut(s) 19, 1062
FaeI CATG 8 cut(s) 23, 215, 388, 414, 587, 657, 833, 1066
FatI CATG 8 cut(s) 19, 211, 384, 410, 583, 653, 829, 1062
FbaI TGATCA 2 cut(s) 387, 832
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 109, 451, 845, 873
FokI GGATG 3 cut(s) 171, 628, 1045
Fsp4HI GCNGC 4 cut(s) 109, 451, 845, 873
FspBI CTAG 3 cut(s) 93, 372, 687
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 1 cut(s) 288
GluI GCNGC 4 cut(s) 109, 451, 845, 873
GsaI CCCAGC 2 cut(s) 447, 962
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 3 cut(s) 450, 606, 679
HapII CCGG 2 cut(s) 611, 936
HhaI GCGC 1 cut(s) 289
Hin1II CATG 8 cut(s) 23, 215, 388, 414, 587, 657, 833, 1066
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 2 cut(s) 199, 1073
HpaII CCGG 2 cut(s) 611, 936
HphI GGTGA 6 cut(s) 227, 349, 724, 827, 832, 979
Hpy166II GTNNAC 2 cut(s) 660, 745
Hpy188I TCNGA 6 cut(s) 73, 427, 546, 628, 646, 719
Hpy188III TCNNGA 2 cut(s) 167, 830
Hpy8I GTNNAC 2 cut(s) 660, 745
HpyAV CCTTC 2 cut(s) 128, 901
HpyCH4III ACNGT 7 cut(s) 37, 208, 664, 739, 866, 1045, 1092
HpyCH4IV ACGT 2 cut(s) 47, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 532
HpyF3I CTNAG 4 cut(s) 543, 556, 590, 808
HpySE526I ACGT 2 cut(s) 47, 438
Hsp92II CATG 8 cut(s) 23, 215, 388, 414, 587, 657, 833, 1066
HspAI GCGC 1 cut(s) 287
KpnI GGTACC 1 cut(s) 19
Ksp22I TGATCA 2 cut(s) 387, 832
Kzo9I GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
Lsp1109I GCAGC 2 cut(s) 856, 859
LweI GCATC 3 cut(s) 193, 330, 1067
MaeI CTAG 3 cut(s) 93, 372, 687
MaeII ACGT 2 cut(s) 47, 438
MaeIII GTNAC 2 cut(s) 215, 593
MalI GATC 8 cut(s) 139, 165, 297, 351, 389, 498, 716, 834
MboI GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
MboII GAAGA 5 cut(s) 110, 680, 1068, 1079, 1082
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 4 cut(s) 260, 432, 698, 729
MseI TTAA 7 cut(s) 357, 537, 765, 878, 990, 998, 1085
MslI CAYNNNNRTG 1 cut(s) 1000
MspA1I CMGCKG 1 cut(s) 847
MspCI CTTAAG 1 cut(s) 877
MspI CCGG 2 cut(s) 611, 936
MspR9I CCNGG 1 cut(s) 937
MwoI GCNNNNNNNGC 2 cut(s) 190, 532
NciI CCSGG 1 cut(s) 937
NcoI CCATGG 2 cut(s) 19, 1062
NdeII GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
NlaIII CATG 8 cut(s) 23, 215, 388, 414, 587, 657, 833, 1066
NlaIV GGNNCC 5 cut(s) 17, 280, 449, 934, 1042
NmeAIII GCCGAG 2 cut(s) 511, 820
NmuCI GTSAC 2 cut(s) 215, 593
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 1 cut(s) 414
PagI TCATGA 1 cut(s) 829
PceI AGGCCT 1 cut(s) 606
PfeI GAWTC 2 cut(s) 199, 1073
PflMI CCANNNNNTGG 1 cut(s) 48
PkrI GCNGC 4 cut(s) 110, 452, 846, 874
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
PspFI CCCAGC 2 cut(s) 443, 958
PspN4I GGNNCC 5 cut(s) 17, 280, 449, 934, 1042
PspPI GGNCC 3 cut(s) 279, 448, 613
PspPPI RGGWCCY 1 cut(s) 279
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 3 cut(s) 17, 400, 797
RsaNI GTAC 3 cut(s) 16, 399, 796
RseI CAYNNNNRTG 1 cut(s) 1000
SaqAI TTAA 7 cut(s) 357, 537, 765, 878, 990, 998, 1085
SatI GCNGC 4 cut(s) 109, 451, 845, 873
Sau3AI GATC 8 cut(s) 137, 163, 295, 349, 387, 496, 714, 832
Sau96I GGNCC 3 cut(s) 279, 448, 613
ScrFI CCNGG 1 cut(s) 937
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 3 cut(s) 193, 330, 1067
SinI GGWCC 2 cut(s) 279, 613
SmiMI CAYNNNNRTG 1 cut(s) 1000
SmlI CTYRAG 2 cut(s) 877, 914
SmoI CTYRAG 2 cut(s) 877, 914
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 4 cut(s) 260, 432, 698, 729
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 2 cut(s) 108, 451
SspMI CTAG 3 cut(s) 93, 372, 687
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 935
StyI CCWWGG 2 cut(s) 19, 1062
TaaI ACNGT 7 cut(s) 37, 208, 664, 739, 866, 1045, 1092
TaiI ACGT 2 cut(s) 50, 441
TaqI TCGA 2 cut(s) 30, 727
TasI AATT 4 cut(s) 260, 432, 698, 729
TauI GCSGC 2 cut(s) 111, 453
TfiI GAWTC 2 cut(s) 199, 1073
Tru1I TTAA 7 cut(s) 357, 537, 765, 878, 990, 998, 1085
Tru9I TTAA 7 cut(s) 357, 537, 765, 878, 990, 998, 1085
TscAI CASTG 3 cut(s) 235, 507, 598
TseFI GTSAC 2 cut(s) 215, 593
TseI GCWGC 2 cut(s) 844, 872
Tsp45I GTSAC 2 cut(s) 215, 593
TspDTI ATGAA 3 cut(s) 200, 572, 818
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 3 cut(s) 235, 507, 598
Van91I CCANNNNNTGG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 877
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 279, 613
XapI RAATTY 2 cut(s) 432, 729
XceI RCATGY 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 3 cut(s) 93, 372, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.