Rmu_sc0005263.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005263.1
OG0010405
Physical Location & Seq
Forward (+)
1 .. 4597
4597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005263.1_g000001.1.cds

Sequence Viewer

Length: 1300 bp
ggaatctctgcatcaagctatcattcctgggttgcctgacgacttggcattgagctgtctggcaaatctttctcatggatatcatggactggttgaaagtgtttcgaagacgtggagagatttgatccgaagctcggaatatgccaactataaagctagagaacgattgtgtggcaactggttgtttgttttgactgaatgctccaacaatgagtgggttgcttatgatcctgaagctgataggtggcatcctttgccgaagattccatctgtccatgctgaggggaaacagtatgggttttcatgtattagtgtttgcagtcggtttttcgtaattggaggttcctattctcggcataatcctgcatttccccatcagaggcctttggtaactaatgaggtcatgcagtttgatccgtttaagaaacaatggaccaatgtggcaagcatgattactccccgctctcactttgcatgtagcgttgtatctggtaagatttatgttgctgggggacgtaacttatcttgcaccagagggcttactcttgctgaggtctatgatccagtggctgacaaatgggaggagttgccaccaatgccccatgcccagatggactgcttaggattatcctataaagggaaatttcatgttcttagcgaccaagtaggcctgccagaccaaaatacctctgaggtatttagcctatctgatggaacatggtgcacaatggaagacgtttggcctttttcaagggcaatgcaatttgcagttcaggtgataggagataatcgagtgtataccgttgtagattggggtgagagctttattaaaacaagagatactgaaaaaggagagtggtacaacataggctcagttccatctgtggttcttcctgatcattgtcggcagctggaggcttttggttatggttttactgccttacaaaatgaattatatgtcctaggagggaaggctctcaagtgggaacaatctggtgctgggaggtttgacattgtcaagttggatgtggtgagggtctgtaaccccttggttaagccattaaaatggagggaaaccagacccatgattgggtcagctcgtggcactgtcatagggtgtgcatccatggaagaagaatcttcttgtgaccaaggctttattctgtcctttcatagtatagaacagggccataaccttgctttgaggagagacactagcattaactacaaacatttcaaaaaccatgtctcacatagaggagataatgcatacctgctaggtgttcccgaagaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

432

Amino Acids

48.63

Weight (kDa)

6.16

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1282
AccBSI CCGCTC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 798
AciI CCGC 1 cut(s) 461
AclWI GGATC 4 cut(s) 119, 222, 408, 555
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 253
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 7 cut(s) 134, 281, 352, 379, 637, 1089, 1090
AgsI TTSAA 3 cut(s) 96, 751, 1238
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 26
AjuI GAANNNNNNNTTGG 2 cut(s) 1144, 1176
AluBI AGCT 8 cut(s) 18, 55, 133, 156, 237, 823, 911, 1098
AluI AGCT 8 cut(s) 18, 55, 133, 156, 237, 823, 911, 1098
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 2 cut(s) 1204, 1253
Alw44I GTGCAC 1 cut(s) 722
AlwI GGATC 4 cut(s) 119, 222, 408, 555
AlwNI CAGNNNCTG 1 cut(s) 570
AoxI GGCC 4 cut(s) 381, 668, 741, 1187
ApaLI GTGCAC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 1 cut(s) 642
ArsI GACNNNNNNTTYG 2 cut(s) 1231, 1263
AspA2I CCTAGG 1 cut(s) 962
AspS9I GGNCC 2 cut(s) 433, 1187
AsuHPI GGTGA 3 cut(s) 788, 828, 1043
AsuII TTCGAA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 433
AvrII CCTAGG 1 cut(s) 962
BaeGI GKGCMC 1 cut(s) 726
BauI CACGAG 1 cut(s) 1099
BbsI GAAGAC 2 cut(s) 114, 739
Bbv12I GWGCWC 1 cut(s) 726
BbvCI CCTCAGC 2 cut(s) 280, 550
BbvI GCAGC 1 cut(s) 920
BccI CCATC 5 cut(s) 275, 382, 605, 705, 887
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 1204, 1253
BfaI CTAG 4 cut(s) 157, 963, 1216, 1278
BfuAI ACCTGC 1 cut(s) 1282
BisI GCNGC 1 cut(s) 909
BlnI CCTAGG 1 cut(s) 962
BlsI GCNGC 1 cut(s) 910
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 433, 1187
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 20, 257, 1131
BpiI GAAGAC 2 cut(s) 114, 739
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 3 cut(s) 280, 550, 620
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 963
BsaJI CCNNGG 5 cut(s) 27, 962, 1048, 1126, 1151
Bsc4I CCNNNNNNNGG 7 cut(s) 134, 281, 352, 379, 637, 1089, 1090
Bse1I ACTGG 3 cut(s) 94, 183, 564
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 5 cut(s) 27, 962, 1048, 1126, 1151
BseGI GGATG 3 cut(s) 248, 1031, 1122
BseLI CCNNNNNNNGG 7 cut(s) 134, 281, 352, 379, 637, 1089, 1090
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 4 cut(s) 271, 541, 682, 886
BseNI ACTGG 3 cut(s) 94, 183, 564
BseRI GAGGAG 3 cut(s) 597, 1220, 1273
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 1 cut(s) 920
BseYI CCCAGC 2 cut(s) 507, 999
BshFI GGCC 4 cut(s) 383, 670, 743, 1189
BsiHKAI GWGCWC 1 cut(s) 726
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 7 cut(s) 134, 281, 352, 379, 637, 1089, 1090
BsmAI GTCTC 2 cut(s) 1204, 1253
BsmFI GGGAC 1 cut(s) 526
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 4 cut(s) 383, 670, 743, 1189
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 5 cut(s) 124, 227, 413, 560, 896
Bsp19I CCATGG 1 cut(s) 1126
BspACI CCGC 1 cut(s) 461
BspANI GGCC 4 cut(s) 383, 670, 743, 1189
BspCNI CTCAG 4 cut(s) 272, 542, 683, 885
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 1282
BspPI GGATC 4 cut(s) 119, 222, 408, 555
BspT104I TTCGAA 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 763
BsrI ACTGG 3 cut(s) 94, 183, 564
BssECI CCNNGG 5 cut(s) 27, 962, 1048, 1126, 1151
BssMI GATC 5 cut(s) 124, 227, 413, 560, 896
BssNAI GTATAC 1 cut(s) 799
BssSI CACGAG 1 cut(s) 1099
BssT1I CCWWGG 4 cut(s) 962, 1048, 1126, 1151
Bst1107I GTATAC 1 cut(s) 799
Bst2BI CACGAG 1 cut(s) 1099
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 3 cut(s) 292, 803, 1109
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 446, 672
BstDEI CTNAG 6 cut(s) 280, 550, 620, 654, 691, 872
BstDSI CCRYGG 1 cut(s) 1126
BstF5I GGATG 3 cut(s) 248, 1031, 1122
BstKTI GATC 5 cut(s) 127, 230, 416, 563, 899
BstMAI GTCTC 2 cut(s) 1204, 1253
BstMBI GATC 5 cut(s) 124, 227, 413, 560, 896
BstMWI GCNNNNNNNGC 2 cut(s) 254, 596
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 920
BstV2I GAAGAC 2 cut(s) 114, 739
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstZ17I GTATAC 1 cut(s) 799
BsuRI GGCC 4 cut(s) 383, 670, 743, 1189
BtgI CCRYGG 1 cut(s) 1126
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 3 cut(s) 248, 1031, 1122
BtsIMutI CAGTG 2 cut(s) 571, 1105
BveI ACCTGC 1 cut(s) 1282
Cac8I GCNNGC 2 cut(s) 446, 672
CaiI CAGNNNCTG 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 433, 1187
Csp6I GTAC 1 cut(s) 860
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 6 cut(s) 280, 550, 620, 654, 691, 872
DpnI GATC 5 cut(s) 126, 229, 415, 562, 898
DpnII GATC 5 cut(s) 124, 227, 413, 560, 896
Eco130I CCWWGG 4 cut(s) 962, 1048, 1126, 1151
Eco147I AGGCCT 2 cut(s) 383, 670
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 4 cut(s) 962, 1048, 1126, 1151
EcoT22I ATGCAT 1 cut(s) 1271
ErhI CCWWGG 4 cut(s) 962, 1048, 1126, 1151
FaqI GGGAC 1 cut(s) 526
FauI CCCGC 1 cut(s) 468
FbaI TGATCA 1 cut(s) 896
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 1 cut(s) 909
FokI GGATG 3 cut(s) 235, 1038, 1109
Fsp4HI GCNGC 1 cut(s) 909
FspBI CTAG 4 cut(s) 157, 963, 1216, 1278
GluI GCNGC 1 cut(s) 909
GsaI CCCAGC 2 cut(s) 511, 1003
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 4 cut(s) 383, 670, 743, 1189
HinfI GANTC 3 cut(s) 3, 263, 1137
HphI GGTGA 3 cut(s) 788, 828, 1043
Hpy166II GTNNAC 2 cut(s) 724, 799
Hpy188I TCNGA 5 cut(s) 129, 137, 379, 692, 710
Hpy188III TCNNGA 3 cut(s) 231, 894, 1287
Hpy8I GTNNAC 2 cut(s) 724, 799
HpyAV CCTTC 1 cut(s) 965
HpyCH4III ACNGT 3 cut(s) 292, 803, 1109
HpyCH4IV ACGT 3 cut(s) 111, 515, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 596
HpyF3I CTNAG 6 cut(s) 280, 550, 620, 654, 691, 872
HpySE526I ACGT 3 cut(s) 111, 515, 736
Ksp22I TGATCA 1 cut(s) 896
Kzo9I GATC 5 cut(s) 124, 227, 413, 560, 896
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 3 cut(s) 20, 257, 1131
MaeI CTAG 4 cut(s) 157, 963, 1216, 1278
MaeII ACGT 3 cut(s) 111, 515, 736
MaeIII GTNAC 4 cut(s) 389, 516, 1041, 1146
MalI GATC 5 cut(s) 126, 229, 415, 562, 898
MbiI CCGCTC 1 cut(s) 463
MboI GATC 5 cut(s) 124, 227, 413, 560, 896
MboII GAAGA 7 cut(s) 119, 272, 744, 882, 1132, 1143, 1146
MhlI GDGCHC 1 cut(s) 726
MluCI AATT 4 cut(s) 334, 642, 762, 951
MmeI TCCRAC 2 cut(s) 229, 1003
Mph1103I ATGCAT 1 cut(s) 1271
MseI TTAA 5 cut(s) 421, 829, 1054, 1062, 1222
MslI CAYNNNNRTG 1 cut(s) 1064
MspA1I CMGCKG 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 254, 596
NcoI CCATGG 1 cut(s) 1126
NdeII GATC 5 cut(s) 124, 227, 413, 560, 896
NlaIV GGNNCC 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 1146
NsiI ATGCAT 1 cut(s) 1271
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 1 cut(s) 105
PceI AGGCCT 2 cut(s) 383, 670
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 3, 263, 1137
PflFI GACNNNGTC 1 cut(s) 1014
PkrI GCNGC 1 cut(s) 910
Psp6I CCWGG 1 cut(s) 26
PspFI CCCAGC 2 cut(s) 507, 999
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 433, 1187
PstNI CAGNNNCTG 1 cut(s) 570
PsyI GACNNNGTC 1 cut(s) 1014
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
RseI CAYNNNNRTG 1 cut(s) 1064
SaqAI TTAA 5 cut(s) 421, 829, 1054, 1062, 1222
SatI GCNGC 1 cut(s) 909
Sau3AI GATC 5 cut(s) 124, 227, 413, 560, 896
Sau96I GGNCC 2 cut(s) 433, 1187
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 3 cut(s) 20, 257, 1131
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 1 cut(s) 978
SmoI CTYRAG 1 cut(s) 978
Sse9I AATT 4 cut(s) 334, 642, 762, 951
SseBI AGGCCT 2 cut(s) 383, 670
SsiI CCGC 1 cut(s) 461
SspMI CTAG 4 cut(s) 157, 963, 1216, 1278
StuI AGGCCT 2 cut(s) 383, 670
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 4 cut(s) 962, 1048, 1126, 1151
TaaI ACNGT 3 cut(s) 292, 803, 1109
TaiI ACGT 3 cut(s) 114, 518, 739
TaqI TCGA 2 cut(s) 105, 791
TasI AATT 4 cut(s) 334, 642, 762, 951
TfiI GAWTC 3 cut(s) 3, 263, 1137
Tru1I TTAA 5 cut(s) 421, 829, 1054, 1062, 1222
Tru9I TTAA 5 cut(s) 421, 829, 1054, 1062, 1222
TscAI CASTG 2 cut(s) 571, 1112
TseFI GTSAC 1 cut(s) 1146
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 1 cut(s) 1146
TspDTI ATGAA 4 cut(s) 292, 636, 964, 1161
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 571, 1112
Tth111I GACNNNGTC 1 cut(s) 1014
VneI GTGCAC 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 642
XceI RCATGY 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 962
XmiI GTMKAC 1 cut(s) 798
XspI CTAG 4 cut(s) 157, 963, 1216, 1278
Zsp2I ATGCAT 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.