RLG00000007184

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010405
Physical Location & Seq
Forward (+)
14318804 .. 14321560
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007184

Sequence Viewer

Length: 1410 bp
ATGTATACTTTCCCATTCTTCATAGCATTATGTGTATCTGTTCCTCCTTATCTGAACCCTGAATTCAATTTGCAGAATTGGGTTGGTTTAAAGTTTCAATCTTTGGCATATAGGGAATCTCTGCATCAAGCTATCATTCCCGGGTTGCCTGATGACTTGGCATTGAGATGTCTGGCAAAGCTGTCTCATGGATACCATGGACTGGTTGAAACCGTTTCGAAGACGTGGAGAGATTTGATCCGAAGCTCGGAATATGCCAACTATAAAGCTAGAGAACGATCGTGTGGCAACTGGTTGTTTGTTTTGACTGAATGCTCCAATAATGAGTGGGTTGCTTATGATCCTGAGGCTGATAGGTGGCATCCTTTGCCAAAGATTCCATCTATCCATGCTGAGGGGAAACACTATGGGTTTTCATGTGTTAGTGTTTGCAGTCGGTTTTTCGTAATTGGAGGTTCCTATTCGCAGGATAATCCTGCATTTCCCCATCAGAGGCCTTCAGTAACAAATGAGGTCATGCAGTTTGATCCGTTTAAGAAACAATGGACCAATGTGGCAAGCATGATTACTCCCCGCTCTCACTTTGCATGTAGCGTTGTATCTGGTAAGATTTATGTTGCTGGGGGACGTAACTTATCTTGCACCAGAGGGCTTGCTCTTGCTGAGGTCTATGATCCAGTGGCTGACAAATGGGAGGAGTTGCCACCAATGCCCCATGCCCAGATGGACTGCTTAGGATTATCCTATAAAGGGAAATTTCATGTTCTTAGCGACCAAGTAGGCCTGCCAGACCAAAATACCTCTGAGGTATTTAGCCTATCTGATGGAACGTGGTGCACAATGGAAGACGTTTGGCCTTTTTCAAGGGCAATGCAATTTGCAGTTCAGGTTATAGGAGATAATCGAGTGTATACCGTTGTAGATTGGGGTGAGAGCTTTATTAAAACAAGAGATACTGAAAAAGGAGAGTGGTACAACATAGGCTCAGTTCCATCTGTGGTTCTTCCTGATCACTGTCGGCAGCTGGAGGCTTTTGGTTATGGTTTTACTGCCTTACAACATGAATTATATGTCCTAGGAGGGAAGGCTCTCAAGTGGGAACAGTCTGGTGCTGGGAGGTTTGACATTGTCAAGTTGGATGTGGTGAGGGTCTGTAACCCCTTGGTTAAGCCATTAAAATGGAGGGAAACGAGACCCATGATTGGGTCAGCTCGTGGCACTGTCATAGGGTGTGCATCCATGGAAGAAGAATCTTCATGTGACCAGGCTTTTTTCTGTTGGGGCGCTTCCGAATTCATTCCCTTTCATAGTACAAAACAGGGCCATAACCTTGCTTTAAGGAGAGACACTAGCATTAACTACAAACAATTTCAAAAATCATGTCACATAGAGGAGAGAATGCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

470

Amino Acids

53.18

Weight (kDa)

6.47

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 108 - 239 3.3e-09 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 118 - 332 1.8e-18 FKB95, Kelch-repeats domain
Beta-prop_FBX42 PF13415 134 - 227 3.1e-06 FBX42, beta-propeller domain
Kelch_2 PF07646 135 - 188 7.8e-06 Kelch motif
Kelch_1 PF01344 191 - 238 1.2e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 576
AccI GTMKAC 2 cut(s) 5, 911
AciI CCGC 1 cut(s) 574
AclWI GGATC 4 cut(s) 232, 335, 521, 668
AcsI RAATTY 3 cut(s) 62, 755, 1292
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 974, 1312
AfiI CCNNNNNNNGG 7 cut(s) 202, 247, 394, 492, 750, 1202, 1203
AgsI TTSAA 5 cut(s) 67, 98, 209, 864, 1373
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 1 cut(s) 1263
AluBI AGCT 7 cut(s) 131, 181, 246, 269, 936, 1024, 1211
AluI AGCT 7 cut(s) 131, 181, 246, 269, 936, 1024, 1211
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 3 cut(s) 189, 1186, 1338
Alw44I GTGCAC 1 cut(s) 835
AlwI GGATC 4 cut(s) 232, 335, 521, 668
AlwNI CAGNNNCTG 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 4 cut(s) 494, 781, 854, 1321
ApaLI GTGCAC 1 cut(s) 835
ApeKI GCWGC 1 cut(s) 1021
ApoI RAATTY 3 cut(s) 62, 755, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 1366, 1398
Asp700I GAANNNNTTC 1 cut(s) 1296
AspA2I CCTAGG 1 cut(s) 1075
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 2 cut(s) 546, 1321
AsuC2I CCSGG 2 cut(s) 141, 142
AsuHPI GGTGA 2 cut(s) 941, 1156
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 546
AvrII CCTAGG 1 cut(s) 1075
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 839
BauI CACGAG 1 cut(s) 1212
BbsI GAAGAC 2 cut(s) 227, 852
Bbv12I GWGCWC 1 cut(s) 839
BbvCI CCTCAGC 2 cut(s) 393, 663
BbvI GCAGC 1 cut(s) 1033
BccI CCATC 5 cut(s) 388, 495, 718, 818, 1000
BciT130I CCWGG 1 cut(s) 1265
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 1009
BcnI CCSGG 2 cut(s) 141, 142
BcoDI GTCTC 3 cut(s) 189, 1186, 1338
BfaI CTAG 3 cut(s) 270, 1076, 1350
BfoI RGCGCY 1 cut(s) 1287
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 1 cut(s) 1022
BlnI CCTAGG 1 cut(s) 1075
BlsI GCNGC 1 cut(s) 1023
Bme1390I CCNGG 3 cut(s) 141, 142, 1265
Bme18I GGWCC 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 546, 1321
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 3 cut(s) 141, 142, 1265
BmsI GCATC 3 cut(s) 133, 370, 1244
BpiI GAAGAC 2 cut(s) 227, 852
BpmI CTGGAG 1 cut(s) 1046
Bpu10I CCTNAGC 3 cut(s) 393, 663, 733
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 2 cut(s) 141, 142
BsaI GGTCTC 1 cut(s) 1186
BsaJI CCNNGG 5 cut(s) 140, 196, 1075, 1161, 1239
Bsc4I CCNNNNNNNGG 7 cut(s) 202, 247, 394, 492, 750, 1202, 1203
Bse1I ACTGG 3 cut(s) 207, 296, 677
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 1 cut(s) 1265
BseDI CCNNGG 5 cut(s) 140, 196, 1075, 1161, 1239
BseGI GGATG 3 cut(s) 361, 1144, 1235
BseLI CCNNNNNNNGG 7 cut(s) 202, 247, 394, 492, 750, 1202, 1203
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 5 cut(s) 336, 384, 654, 795, 999
BseNI ACTGG 3 cut(s) 207, 296, 677
BseRI GAGGAG 2 cut(s) 710, 1406
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 1 cut(s) 1033
BseYI CCCAGC 2 cut(s) 620, 1112
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 4 cut(s) 496, 783, 856, 1323
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 839
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 7 cut(s) 202, 247, 394, 492, 750, 1202, 1203
BsmAI GTCTC 3 cut(s) 189, 1186, 1338
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 2 cut(s) 317, 1404
BsnI GGCC 4 cut(s) 496, 783, 856, 1323
Bso31I GGTCTC 1 cut(s) 1186
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 839
Bsp143I GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
Bsp19I CCATGG 2 cut(s) 196, 1239
BspACI CCGC 1 cut(s) 574
BspANI GGCC 4 cut(s) 496, 783, 856, 1323
BspCNI CTCAG 5 cut(s) 337, 385, 655, 796, 998
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 4 cut(s) 232, 335, 521, 668
BspT104I TTCGAA 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 1186
BsrBI CCGCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 876
BsrI ACTGG 3 cut(s) 207, 296, 677
BssECI CCNNGG 5 cut(s) 140, 196, 1075, 1161, 1239
BssMI GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
BssNAI GTATAC 2 cut(s) 6, 912
BssSI CACGAG 1 cut(s) 1212
BssT1I CCWWGG 4 cut(s) 196, 1075, 1161, 1239
Bst1107I GTATAC 2 cut(s) 6, 912
Bst2BI CACGAG 1 cut(s) 1212
Bst2UI CCWGG 1 cut(s) 1265
Bst4CI ACNGT 5 cut(s) 214, 916, 1016, 1104, 1222
BstAPI GCANNNNNTGC 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 559, 654, 785
BstDEI CTNAG 7 cut(s) 345, 393, 663, 733, 767, 804, 985
BstDSI CCRYGG 2 cut(s) 196, 1239
BstF5I GGATG 3 cut(s) 361, 1144, 1235
BstH2I RGCGCY 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 6 cut(s) 240, 281, 343, 529, 676, 1012
BstMAI GTCTC 3 cut(s) 189, 1186, 1338
BstMBI GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 367, 709
BstNI CCWGG 1 cut(s) 1265
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 3 cut(s) 139, 140, 1263
BstSLI GKGCMC 1 cut(s) 839
BstV1I GCAGC 1 cut(s) 1033
BstV2I GAAGAC 2 cut(s) 227, 852
BstXI CCANNNNNNTGG 1 cut(s) 1179
BstZ17I GTATAC 2 cut(s) 6, 912
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 4 cut(s) 496, 783, 856, 1323
BtgI CCRYGG 2 cut(s) 196, 1239
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 3 cut(s) 361, 1144, 1235
BtsIMutI CAGTG 3 cut(s) 684, 1012, 1218
Cac8I GCNNGC 3 cut(s) 559, 654, 785
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 2 cut(s) 546, 1321
Cfr9I CCCGGG 1 cut(s) 140
Csp6I GTAC 2 cut(s) 973, 1311
CviQI GTAC 2 cut(s) 973, 1311
DdeI CTNAG 7 cut(s) 345, 393, 663, 733, 767, 804, 985
DpnI GATC 6 cut(s) 239, 280, 342, 528, 675, 1011
DpnII GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
DraI TTTAAA 1 cut(s) 90
Eco130I CCWWGG 4 cut(s) 196, 1075, 1161, 1239
Eco147I AGGCCT 2 cut(s) 496, 783
Eco31I GGTCTC 1 cut(s) 1186
Eco47I GGWCC 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 62, 1292
EcoRII CCWGG 1 cut(s) 1263
EcoT14I CCWWGG 4 cut(s) 196, 1075, 1161, 1239
EcoT22I ATGCAT 1 cut(s) 1404
ErhI CCWWGG 4 cut(s) 196, 1075, 1161, 1239
FaqI GGGAC 1 cut(s) 639
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 2 cut(s) 5, 911
Fnu4HI GCNGC 1 cut(s) 1022
FokI GGATG 3 cut(s) 348, 1151, 1222
Fsp4HI GCNGC 1 cut(s) 1022
FspBI CTAG 3 cut(s) 270, 1076, 1350
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 1 cut(s) 1022
GsaI CCCAGC 2 cut(s) 624, 1116
GsuI CTGGAG 1 cut(s) 1046
HaeII RGCGCY 1 cut(s) 1287
HaeIII GGCC 4 cut(s) 496, 783, 856, 1323
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 1286
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HinfI GANTC 3 cut(s) 116, 376, 1250
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 941, 1156
Hpy166II GTNNAC 3 cut(s) 6, 837, 912
Hpy188I TCNGA 7 cut(s) 54, 242, 250, 492, 805, 823, 1291
Hpy188III TCNNGA 2 cut(s) 344, 1007
Hpy8I GTNNAC 3 cut(s) 6, 837, 912
HpyAV CCTTC 2 cut(s) 507, 1078
HpyCH4III ACNGT 5 cut(s) 214, 916, 1016, 1104, 1222
HpyCH4IV ACGT 4 cut(s) 224, 628, 830, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 709
HpyF3I CTNAG 7 cut(s) 345, 393, 663, 733, 767, 804, 985
HpySE526I ACGT 4 cut(s) 224, 628, 830, 849
HspAI GCGC 1 cut(s) 1284
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 1033
LweI GCATC 3 cut(s) 133, 370, 1244
MaeI CTAG 3 cut(s) 270, 1076, 1350
MaeII ACGT 4 cut(s) 224, 628, 830, 849
MaeIII GTNAC 5 cut(s) 502, 629, 1154, 1259, 1382
MalI GATC 6 cut(s) 239, 280, 342, 528, 675, 1011
MbiI CCGCTC 1 cut(s) 576
MboI GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
MboII GAAGA 7 cut(s) 10, 232, 857, 995, 1245, 1256, 1259
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 9 cut(s) 62, 67, 76, 447, 755, 875, 1064, 1292, 1367
MmeI TCCRAC 1 cut(s) 1116
Mph1103I ATGCAT 1 cut(s) 1404
MroXI GAANNNNTTC 1 cut(s) 1296
MseI TTAA 7 cut(s) 89, 534, 942, 1167, 1175, 1337, 1356
MslI CAYNNNNRTG 2 cut(s) 166, 1177
MspA1I CMGCKG 1 cut(s) 1024
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 3 cut(s) 141, 142, 1265
Mva1269I GAATGC 2 cut(s) 317, 1404
MvaI CCWGG 1 cut(s) 1265
MwoI GCNNNNNNNGC 2 cut(s) 367, 709
NciI CCSGG 2 cut(s) 141, 142
NcoI CCATGG 2 cut(s) 196, 1239
NdeII GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 1259, 1382
NsiI ATGCAT 1 cut(s) 1404
NspI RCATGY 1 cut(s) 591
NspV TTCGAA 1 cut(s) 218
PceI AGGCCT 2 cut(s) 496, 783
PctI GAATGC 2 cut(s) 317, 1404
PdmI GAANNNNTTC 1 cut(s) 1296
PfeI GAWTC 3 cut(s) 116, 376, 1250
PflFI GACNNNGTC 1 cut(s) 1127
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 1 cut(s) 1023
Ple19I CGATCG 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 1263
PspFI CCCAGC 2 cut(s) 620, 1112
PspGI CCWGG 1 cut(s) 1263
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 2 cut(s) 546, 1321
PstNI CAGNNNCTG 1 cut(s) 683
PsyI GACNNNGTC 1 cut(s) 1127
PvuI CGATCG 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 2 cut(s) 974, 1312
RsaNI GTAC 2 cut(s) 973, 1311
RseI CAYNNNNRTG 2 cut(s) 166, 1177
SaqAI TTAA 7 cut(s) 89, 534, 942, 1167, 1175, 1337, 1356
SatI GCNGC 1 cut(s) 1022
Sau3AI GATC 6 cut(s) 237, 278, 340, 526, 673, 1009
Sau96I GGNCC 2 cut(s) 546, 1321
ScrFI CCNGG 3 cut(s) 141, 142, 1265
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 3 cut(s) 133, 370, 1244
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 546
SmaI CCCGGG 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 166, 1177
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
Sse9I AATT 9 cut(s) 62, 67, 76, 447, 755, 875, 1064, 1292, 1367
SseBI AGGCCT 2 cut(s) 496, 783
SsiI CCGC 1 cut(s) 574
SspMI CTAG 3 cut(s) 270, 1076, 1350
StuI AGGCCT 2 cut(s) 496, 783
StyD4I CCNGG 3 cut(s) 139, 140, 1263
StyI CCWWGG 4 cut(s) 196, 1075, 1161, 1239
TaaI ACNGT 5 cut(s) 214, 916, 1016, 1104, 1222
TaiI ACGT 4 cut(s) 227, 631, 833, 852
TaqI TCGA 2 cut(s) 218, 904
TasI AATT 9 cut(s) 62, 67, 76, 447, 755, 875, 1064, 1292, 1367
TatI WGTACW 1 cut(s) 1310
TfiI GAWTC 3 cut(s) 116, 376, 1250
Tru1I TTAA 7 cut(s) 89, 534, 942, 1167, 1175, 1337, 1356
Tru9I TTAA 7 cut(s) 89, 534, 942, 1167, 1175, 1337, 1356
TscAI CASTG 3 cut(s) 684, 1019, 1225
TseFI GTSAC 2 cut(s) 1259, 1382
TseI GCWGC 1 cut(s) 1021
Tsp45I GTSAC 2 cut(s) 1259, 1382
TspDTI ATGAA 7 cut(s) 10, 405, 749, 1077, 1245, 1285, 1295
TspGWI ACGGA 1 cut(s) 519
TspMI CCCGGG 1 cut(s) 140
TspRI CASTG 3 cut(s) 684, 1019, 1225
Tth111I GACNNNGTC 1 cut(s) 1127
Van91I CCANNNNNTGG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 835
VpaK11BI GGWCC 1 cut(s) 546
XapI RAATTY 3 cut(s) 62, 755, 1292
XceI RCATGY 1 cut(s) 591
XmaI CCCGGG 1 cut(s) 140
XmaJI CCTAGG 1 cut(s) 1075
XmiI GTMKAC 2 cut(s) 5, 911
XmnI GAANNNNTTC 1 cut(s) 1296
XspI CTAG 3 cut(s) 270, 1076, 1350
Zsp2I ATGCAT 1 cut(s) 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.