Prupe.1G209000_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010405
Physical Location & Seq
Reverse (-)
22301075 .. 22303799
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G209000.1

Sequence Viewer

Length: 1161 bp
ATGGAATCTGTGCATCAATCTATCATTCCTGGATTGCCTGATGATTTGGCATTGAGATGTTTGGCAATGGTTTCTCATGGGTATCATGGACTGCTCGAAACCGTCTCAAAGACGTGGAGATATTTAATCCGTAGCTTGGATTATGCCAACTATAAAGCTAGAGAAGAATGGTGTGGCAACTGGCTGTTTGTTCTGACAGAAGGCTCCAACAATGAGTGGGTTGCTTATGATCCTGAAGCTGATAGGTGGCATCCTTTGCCAAAGATTCTAACTGTCCATGCTGACCGGAAACACTTCGGATTTTCAAGTATTAGTGTCGGAAATCGGTTTTTCGTCATTGGAGGGTCCTATGCACCGCATGATCCAGCTTTTCCACACCAAAGGCCTTTTATAACAAACGAGGTGATGCAGTTTGATCCCTTTAAGAAACAGTGGACCAATGTGGCAACCATGCTTACACCCCGTTCTCATTTTGCATGTAGTGCTGTTTATGGTAAAATTTATGTTGCTGGGGGGCGCAACTTATCTTGCACCAGAGGGCTTGCTCTTGCTGAGGTTTATGATCCGGTTGCTGATAAATGGGAGGAGTTGCCACCAATGCGCAACCCTCAAATGGACTGCTTGGGCTTATCATACAAAGGCAAATTTCATGTTCTGAGTGACCAAGTAGGCCTGCCAGACCAAAATACCTCAGAGGTTTTTAGTCCATCTGATGGAACATGGCGCACAGTTGAAGACATCTGGCCTTTTTCAAGGGCAATGCAATTTGCAGTTCAGGTGATCGGAGATAATCGAGTATATACTGTTGTAGACTGGGGTGAGAGCTTGATTAAAACAAGGGATACCGAAAAAGGGGAGTGGTACAACATAGGCTCAGTTCCATCGGTGAATCTTCCTGATCACTCGAGGCAGCTGGAGGCTTTTGGTTATGGTTTTGCTGCATTAAGACATGAACTTTATGTTCTGGGAGGGAAGGCTCTCAAGTGGGAACAGTCAGGTGCTGGGAGGTTTGACATTGTGAAGTTGGGTTTGGTGAGAGTTTGCAATCCCTTGGTTAAGCCCTTGAAATGGAGGGAAACTAGACCCATGGTTGGGTCCGCTTGTGGAACTGTTATAGGGTGTGCGTCCATGGAAGAAGAATCTTCAATTTTCCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

387

Amino Acids

43.6

Weight (kDa)

6.46

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc16I TGCGCA 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 810
AciI CCGC 2 cut(s) 356, 1098
AclWI GGATC 4 cut(s) 224, 356, 410, 557
AcsI RAATTY 2 cut(s) 498, 644
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 7 cut(s) 136, 613, 713, 852, 1068, 1091, 1092
AgsI TTSAA 5 cut(s) 306, 734, 753, 1066, 1146
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AluBI AGCT 6 cut(s) 135, 158, 239, 368, 825, 913
AluI AGCT 6 cut(s) 135, 158, 239, 368, 825, 913
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 4 cut(s) 224, 356, 410, 557
AlwNI CAGNNNCTG 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 904
AoxI GGCC 3 cut(s) 383, 670, 743
ApeKI GCWGC 2 cut(s) 910, 938
ApoI RAATTY 2 cut(s) 498, 644
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 3 cut(s) 519, 603, 726
AspS9I GGNCC 3 cut(s) 345, 435, 1095
AsuHPI GGTGA 5 cut(s) 415, 790, 830, 898, 1045
AvaI CYCGRG 1 cut(s) 904
AvaII GGWCC 3 cut(s) 345, 435, 1095
BbsI GAAGAC 1 cut(s) 741
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 922, 925
BccI CCATC 3 cut(s) 707, 715, 889
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 835
BclI TGATCA 1 cut(s) 898
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 159, 1080
BfuI GTATCC 1 cut(s) 835
BisI GCNGC 2 cut(s) 911, 939
BlsI GCNGC 2 cut(s) 912, 940
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 3 cut(s) 345, 435, 1095
BmeT110I CYCGRG 1 cut(s) 904
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 3 cut(s) 345, 435, 1095
BmiI GGNNCC 3 cut(s) 205, 346, 1096
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 3 cut(s) 22, 259, 396
BmuI ACTGGG 1 cut(s) 823
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 965
BsaJI CCNNGG 4 cut(s) 1050, 1086, 1128, 1154
BsaWI WCCGGW 2 cut(s) 285, 565
Bsc4I CCNNNNNNNGG 7 cut(s) 136, 613, 713, 852, 1068, 1091, 1092
Bse1I ACTGG 2 cut(s) 185, 818
Bse3DI GCAATG 2 cut(s) 72, 765
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 4 cut(s) 1050, 1086, 1128, 1154
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 7 cut(s) 136, 613, 713, 852, 1068, 1091, 1092
BseMI GCAATG 2 cut(s) 72, 765
BseMII CTCAG 4 cut(s) 543, 647, 705, 888
BseNI ACTGG 2 cut(s) 185, 818
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 2 cut(s) 922, 925
BseYI CCCAGC 2 cut(s) 509, 1001
BshFI GGCC 3 cut(s) 385, 672, 745
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 2 cut(s) 286, 566
BslI CCNNNNNNNGG 7 cut(s) 136, 613, 713, 852, 1068, 1091, 1092
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsnI GGCC 3 cut(s) 385, 672, 745
BsoBI CYCGRG 1 cut(s) 904
Bsp143I GATC 6 cut(s) 229, 361, 415, 562, 780, 898
Bsp19I CCATGG 2 cut(s) 1086, 1128
BspACI CCGC 2 cut(s) 356, 1098
BspANI GGCC 3 cut(s) 385, 672, 745
BspCNI CTCAG 4 cut(s) 544, 648, 704, 887
BspLI GGNNCC 3 cut(s) 205, 346, 1096
BspPI GGATC 4 cut(s) 224, 356, 410, 557
BsrDI GCAATG 2 cut(s) 72, 765
BsrI ACTGG 2 cut(s) 185, 818
BssECI CCNNGG 4 cut(s) 1050, 1086, 1128, 1154
BssMI GATC 6 cut(s) 229, 361, 415, 562, 780, 898
BssT1I CCWWGG 4 cut(s) 1050, 1086, 1128, 1154
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 7 cut(s) 103, 274, 432, 730, 805, 993, 1111
BstAPI GCANNNNNTGC 2 cut(s) 256, 482
BstC8I GCNNGC 2 cut(s) 543, 674
BstDEI CTNAG 4 cut(s) 552, 656, 691, 874
BstDSI CCRYGG 2 cut(s) 1086, 1128
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 3 cut(s) 519, 603, 726
BstKTI GATC 6 cut(s) 232, 364, 418, 565, 783, 901
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 6 cut(s) 229, 361, 415, 562, 780, 898
BstMWI GCNNNNNNNGC 3 cut(s) 256, 482, 598
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 922, 925
BstV2I GAAGAC 1 cut(s) 741
BsuI GTATCC 1 cut(s) 835
BsuRI GGCC 3 cut(s) 385, 672, 745
BtgI CCRYGG 2 cut(s) 1086, 1128
BtrI CACGTC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 543, 674
CaiI CAGNNNCTG 1 cut(s) 1001
CfoI GCGC 3 cut(s) 519, 603, 726
Cfr13I GGNCC 3 cut(s) 345, 435, 1095
CseI GACGC 1 cut(s) 1113
Csp6I GTAC 1 cut(s) 862
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 4 cut(s) 552, 656, 691, 874
DpnI GATC 6 cut(s) 231, 363, 417, 564, 782, 900
DpnII GATC 6 cut(s) 229, 361, 415, 562, 780, 898
Eco130I CCWWGG 4 cut(s) 1050, 1086, 1128, 1154
Eco147I AGGCCT 2 cut(s) 385, 672
Eco47I GGWCC 3 cut(s) 345, 435, 1095
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 4 cut(s) 1050, 1086, 1128, 1154
ErhI CCWWGG 4 cut(s) 1050, 1086, 1128, 1154
Esp3I CGTCTC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 911, 939
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 911, 939
FspBI CTAG 2 cut(s) 159, 1080
FspI TGCGCA 1 cut(s) 602
GlaI GCGC 3 cut(s) 518, 602, 725
GluI GCNGC 2 cut(s) 911, 939
GsaI CCCAGC 2 cut(s) 513, 1005
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 3 cut(s) 385, 672, 745
HapII CCGG 2 cut(s) 286, 566
HgaI GACGC 1 cut(s) 1113
HhaI GCGC 3 cut(s) 519, 603, 726
Hin6I GCGC 3 cut(s) 517, 601, 724
HinP1I GCGC 3 cut(s) 517, 601, 724
HinfI GANTC 4 cut(s) 5, 265, 889, 1139
HpaII CCGG 2 cut(s) 286, 566
HphI GGTGA 5 cut(s) 415, 790, 830, 898, 1045
Hpy166II GTNNAC 2 cut(s) 435, 811
Hpy188I TCNGA 7 cut(s) 195, 299, 320, 657, 694, 712, 785
Hpy188III TCNNGA 2 cut(s) 233, 896
Hpy8I GTNNAC 2 cut(s) 435, 811
HpyAV CCTTC 2 cut(s) 194, 967
HpyCH4III ACNGT 7 cut(s) 103, 274, 432, 730, 805, 993, 1111
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 9 cut(s) 13, 353, 409, 476, 531, 763, 770, 941, 1044
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 482, 598
HpyF3I CTNAG 4 cut(s) 552, 656, 691, 874
HpySE526I ACGT 1 cut(s) 113
HspAI GCGC 3 cut(s) 517, 601, 724
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 6 cut(s) 229, 361, 415, 562, 780, 898
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 2 cut(s) 922, 925
LweI GCATC 3 cut(s) 22, 259, 396
MaeI CTAG 2 cut(s) 159, 1080
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 659
MalI GATC 6 cut(s) 231, 363, 417, 564, 782, 900
MboI GATC 6 cut(s) 229, 361, 415, 562, 780, 898
MboII GAAGA 6 cut(s) 176, 746, 884, 1134, 1145, 1148
MluCI AATT 4 cut(s) 498, 644, 764, 1146
MmeI TCCRAC 2 cut(s) 231, 298
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 5 cut(s) 125, 423, 831, 944, 1056
MslI CAYNNNNRTG 1 cut(s) 55
MspA1I CMGCKG 1 cut(s) 913
MspI CCGG 2 cut(s) 286, 566
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 256, 482, 598
NcoI CCATGG 2 cut(s) 1086, 1128
NdeII GATC 6 cut(s) 229, 361, 415, 562, 780, 898
NlaIV GGNNCC 3 cut(s) 205, 346, 1096
NmuCI GTSAC 1 cut(s) 659
NsbI TGCGCA 1 cut(s) 602
NspI RCATGY 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 904
PceI AGGCCT 2 cut(s) 385, 672
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 4 cut(s) 5, 265, 889, 1139
PflMI CCANNNNNTGG 1 cut(s) 713
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 2 cut(s) 912, 940
PpuMI RGGWCCY 1 cut(s) 345
PsiI TTATAA 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 28
PspFI CCCAGC 2 cut(s) 509, 1001
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 205, 346, 1096
PspPI GGNCC 3 cut(s) 345, 435, 1095
PspPPI RGGWCCY 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 1001
PvuII CAGCTG 1 cut(s) 913
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 5 cut(s) 125, 423, 831, 944, 1056
SatI GCNGC 2 cut(s) 911, 939
Sau3AI GATC 6 cut(s) 229, 361, 415, 562, 780, 898
Sau96I GGNCC 3 cut(s) 345, 435, 1095
ScrFI CCNGG 1 cut(s) 30
SfaNI GCATC 3 cut(s) 22, 259, 396
Sfr274I CTCGAG 1 cut(s) 904
SinI GGWCC 3 cut(s) 345, 435, 1095
SlaI CTCGAG 1 cut(s) 904
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 2 cut(s) 904, 980
SmoI CTYRAG 2 cut(s) 904, 980
Sse9I AATT 4 cut(s) 498, 644, 764, 1146
SseBI AGGCCT 2 cut(s) 385, 672
SsiI CCGC 2 cut(s) 356, 1098
SspMI CTAG 2 cut(s) 159, 1080
StuI AGGCCT 2 cut(s) 385, 672
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 4 cut(s) 1050, 1086, 1128, 1154
TaaI ACNGT 7 cut(s) 103, 274, 432, 730, 805, 993, 1111
TaiI ACGT 1 cut(s) 116
TaqI TCGA 3 cut(s) 96, 793, 905
TasI AATT 4 cut(s) 498, 644, 764, 1146
TfiI GAWTC 4 cut(s) 5, 265, 889, 1139
Tru1I TTAA 5 cut(s) 125, 423, 831, 944, 1056
Tru9I TTAA 5 cut(s) 125, 423, 831, 944, 1056
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 2 cut(s) 910, 938
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 638, 966
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 437
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 3 cut(s) 345, 435, 1095
XapI RAATTY 2 cut(s) 498, 644
XceI RCATGY 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 810
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 2 cut(s) 159, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.