pycom13g11890

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010405
Physical Location & Seq
Forward (+)
8202486 .. 8203560
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11890.1

Sequence Viewer

Length: 747 bp
ATGCTGTTTGATCCGTTTAAGAAACAATGGACCAGTGTGGCAAACATGATCACACCGCGTACTCATTTTGCATGTAGTGTTGTTTCTGGTAAAATTTACGTTGCTGGGGGCCGCAACTTATCTTGCACCAGAGGGCTTGCTCTTGCCGAGGTTTATGTTCCAGTGGCTAATAAATGGGAGGAGCTGCCGCCAATGCTTAATCCTCAGATGGACTGCTTAGGTTTATCATACAAAGGCAGATTTCATGTTCTCAGTGACCAAGTAGGCCTGCCGGACCAAAATACCTCCGAGGTTTTTACTCCATCCGAGGGAACATGGTGCACCGTGGAAGACATCTGGCCTTTTTCTAGGGCAATGCAATTTGCAGTTCAGGTGATAGGAGATAATCAAATATATACTGTTGTAGACTGGGGCGAGAGCTTGATTAAAACAAGGGATACTGAAAGGGGAGAGTGGTACAACATAGGCTCAGTTCCATCGGTGATTTTTCGTGATCACCCTCGGCAGCTGGAGGCTTTTGGCTACGGTTTTGCTGCCTTAAGACGCGAACTTTATGTTCTGGGAGGGAAGGCTCTCAAGTGGGAACAATCTGGTGCCGGGAGGTTTGACATTGTGAAGTTGGGTGTGGTGAGGGTTTGCAACCCCTCGGTTAAGCCATTAAAATGGAGGGAAACTAGACCGATGACTGGGTCAGCTCGTGGCACGGTGATAGGGTGTGCATCCATGGAAGAAGAATCTTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

249

Amino Acids

27.77

Weight (kDa)

7.59

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 4 - 156 1.2e-11 FKB95, Kelch-repeats domain
Kelch_1 PF01344 19 - 65 5.9e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 405
AccII CGCG 2 cut(s) 58, 546
AciI CCGC 3 cut(s) 56, 112, 188
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 2 cut(s) 61, 458
AfiI CCNNNNNNNGG 2 cut(s) 308, 686
AflII CTTAAG 1 cut(s) 538
AluBI AGCT 4 cut(s) 184, 420, 508, 695
AluI AGCT 4 cut(s) 184, 420, 508, 695
Alw21I GWGCWC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 319
AlwI GGATC 1 cut(s) 5
AoxI GGCC 3 cut(s) 109, 265, 338
ApaLI GTGCAC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 184, 505, 533
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 30, 109, 274
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 5 cut(s) 385, 488, 493, 640, 718
AvaII GGWCC 2 cut(s) 30, 274
BaeGI GKGCMC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 593
BauI CACGAG 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 171, 517, 520
BccI CCATC 3 cut(s) 202, 310, 484
BciVI GTATCC 1 cut(s) 430
BclI TGATCA 2 cut(s) 48, 493
BcnI CCSGG 1 cut(s) 598
BfaI CTAG 2 cut(s) 348, 675
BfrI CTTAAG 1 cut(s) 538
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 5 cut(s) 112, 185, 188, 506, 534
BlsI GCNGC 5 cut(s) 113, 186, 189, 507, 535
Bme1390I CCNGG 1 cut(s) 598
Bme18I GGWCC 2 cut(s) 30, 274
BmgT120I GGNCC 3 cut(s) 30, 109, 274
BmiI GGNNCC 2 cut(s) 110, 595
BmrFI CCNGG 1 cut(s) 598
BmrI ACTGGG 2 cut(s) 418, 696
BmsI GCATC 1 cut(s) 728
BmuI ACTGGG 2 cut(s) 418, 696
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 598
BsaJI CCNNGG 7 cut(s) 147, 288, 306, 324, 500, 645, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 686
Bse1I ACTGG 4 cut(s) 33, 161, 413, 691
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 7 cut(s) 147, 288, 306, 324, 500, 645, 723
BseGI GGATG 2 cut(s) 302, 719
BseLI CCNNNNNNNGG 2 cut(s) 308, 686
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 218, 265, 483
BseNI ACTGG 4 cut(s) 33, 161, 413, 691
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 3 cut(s) 171, 517, 520
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 58, 546
BshFI GGCC 3 cut(s) 111, 267, 340
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 272, 597
BslI CCNNNNNNNGG 2 cut(s) 308, 686
BsnI GGCC 3 cut(s) 111, 267, 340
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 10, 48, 493
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 3 cut(s) 56, 112, 188
BspANI GGCC 3 cut(s) 111, 267, 340
BspCNI CTCAG 3 cut(s) 217, 264, 482
BspFNI CGCG 2 cut(s) 58, 546
BspLI GGNNCC 2 cut(s) 110, 595
BspPI GGATC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 593
BspTI CTTAAG 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 4 cut(s) 33, 161, 413, 691
BssECI CCNNGG 7 cut(s) 147, 288, 306, 324, 500, 645, 723
BssMI GATC 3 cut(s) 10, 48, 493
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 723
Bst2BI CACGAG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 325, 400, 527, 706
BstAFI CTTAAG 1 cut(s) 538
BstC8I GCNNGC 2 cut(s) 138, 269
BstDEI CTNAG 4 cut(s) 204, 217, 251, 469
BstDSI CCRYGG 2 cut(s) 324, 723
BstF5I GGATG 2 cut(s) 302, 719
BstFNI CGCG 2 cut(s) 58, 546
BstKTI GATC 3 cut(s) 13, 51, 496
BstMBI GATC 3 cut(s) 10, 48, 493
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 596
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 2 cut(s) 58, 546
BstV1I GCAGC 3 cut(s) 171, 517, 520
BstV2I GAAGAC 1 cut(s) 336
BstXI CCANNNNNNTGG 1 cut(s) 663
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 111, 267, 340
BtgI CCRYGG 2 cut(s) 324, 723
BtsCI GGATG 2 cut(s) 302, 719
BtsIMutI CAGTG 3 cut(s) 40, 168, 259
Cac8I GCNNGC 2 cut(s) 138, 269
Cfr13I GGNCC 3 cut(s) 30, 109, 274
CseI GACGC 1 cut(s) 552
Csp6I GTAC 2 cut(s) 60, 457
CviAII CATG 5 cut(s) 46, 72, 245, 315, 724
CviQI GTAC 2 cut(s) 60, 457
DdeI CTNAG 4 cut(s) 204, 217, 251, 469
DpnI GATC 3 cut(s) 12, 50, 495
DpnII GATC 3 cut(s) 10, 48, 493
Eco130I CCWWGG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 30, 274
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 5 cut(s) 49, 75, 248, 318, 727
FatI CATG 5 cut(s) 45, 71, 244, 314, 723
FbaI TGATCA 2 cut(s) 48, 493
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 5 cut(s) 112, 185, 188, 506, 534
FokI GGATG 2 cut(s) 289, 706
Fsp4HI GCNGC 5 cut(s) 112, 185, 188, 506, 534
FspBI CTAG 2 cut(s) 348, 675
GluI GCNGC 5 cut(s) 112, 185, 188, 506, 534
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 3 cut(s) 111, 267, 340
HapII CCGG 2 cut(s) 272, 597
HgaI GACGC 1 cut(s) 552
Hin1II CATG 5 cut(s) 49, 75, 248, 318, 727
HinfI GANTC 1 cut(s) 734
HpaII CCGG 2 cut(s) 272, 597
HphI GGTGA 5 cut(s) 385, 488, 493, 640, 718
Hpy166II GTNNAC 2 cut(s) 321, 406
Hpy188I TCNGA 3 cut(s) 207, 289, 307
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 2 cut(s) 321, 406
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 4 cut(s) 325, 400, 527, 706
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 7 cut(s) 71, 126, 321, 358, 365, 639, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 4 cut(s) 204, 217, 251, 469
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 5 cut(s) 49, 75, 248, 318, 727
Ksp22I TGATCA 2 cut(s) 48, 493
Kzo9I GATC 3 cut(s) 10, 48, 493
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 3 cut(s) 171, 517, 520
LweI GCATC 1 cut(s) 728
MaeI CTAG 2 cut(s) 348, 675
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 12, 50, 495
MboI GATC 3 cut(s) 10, 48, 493
MboII GAAGA 4 cut(s) 341, 729, 740, 743
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 93, 359
MseI TTAA 6 cut(s) 18, 198, 426, 539, 651, 659
MslI CAYNNNNRTG 1 cut(s) 661
MspA1I CMGCKG 1 cut(s) 508
MspCI CTTAAG 1 cut(s) 538
MspI CCGG 2 cut(s) 272, 597
MspR9I CCNGG 1 cut(s) 598
MvnI CGCG 2 cut(s) 58, 546
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 598
NcoI CCATGG 1 cut(s) 723
NdeII GATC 3 cut(s) 10, 48, 493
NlaIII CATG 5 cut(s) 49, 75, 248, 318, 727
NlaIV GGNNCC 2 cut(s) 110, 595
NmeAIII GCCGAG 2 cut(s) 172, 481
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 75
PceI AGGCCT 1 cut(s) 267
PfeI GAWTC 1 cut(s) 734
PflFI GACNNNGTC 1 cut(s) 688
PkrI GCNGC 5 cut(s) 113, 186, 189, 507, 535
PspFI CCCAGC 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 110, 595
PspPI GGNCC 3 cut(s) 30, 109, 274
PsyI GACNNNGTC 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 2 cut(s) 61, 458
RsaNI GTAC 2 cut(s) 60, 457
RseI CAYNNNNRTG 1 cut(s) 661
SaqAI TTAA 6 cut(s) 18, 198, 426, 539, 651, 659
SatI GCNGC 5 cut(s) 112, 185, 188, 506, 534
Sau3AI GATC 3 cut(s) 10, 48, 493
Sau96I GGNCC 3 cut(s) 30, 109, 274
ScrFI CCNGG 1 cut(s) 598
SduI GDGCHC 1 cut(s) 323
SfaNI GCATC 1 cut(s) 728
SinI GGWCC 2 cut(s) 30, 274
SmiMI CAYNNNNRTG 1 cut(s) 661
SmlI CTYRAG 2 cut(s) 538, 575
SmoI CTYRAG 2 cut(s) 538, 575
Sse9I AATT 2 cut(s) 93, 359
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 3 cut(s) 56, 112, 188
SspMI CTAG 2 cut(s) 348, 675
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 596
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 4 cut(s) 325, 400, 527, 706
TaiI ACGT 1 cut(s) 102
TaqII GACCGA 1 cut(s) 694
TasI AATT 2 cut(s) 93, 359
TauI GCSGC 2 cut(s) 114, 190
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 6 cut(s) 18, 198, 426, 539, 651, 659
Tru9I TTAA 6 cut(s) 18, 198, 426, 539, 651, 659
TscAI CASTG 3 cut(s) 40, 168, 259
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 3 cut(s) 184, 505, 533
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 233, 729
TspRI CASTG 3 cut(s) 40, 168, 259
Tth111I GACNNNGTC 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 538
VneI GTGCAC 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 30, 274
XapI RAATTY 1 cut(s) 93
XceI RCATGY 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 2 cut(s) 348, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.