pycom16g11620

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010405
Physical Location & Seq
Forward (+)
8079808 .. 8080941
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11620.2

Sequence Viewer

Length: 765 bp
ATGCAAATAATTTGGTTTGATCCGTTTAAGAAACAATGGACCAGTGTGGCAAGCATGCTTACACCGCGTACTCATTTTGCATGTAGTGTTGTTTCTGGTAAAATTTACGTTGTTGGGGGCCGCAACTTATCTTGCACCCGAGGGCTTGCTCTTGCCGAGGTTTATGATCCTGTGGCTAATAAATGGGAGGAGTTGCCACCCATGCTCAATCCTCAGATGGACTGCTTAGGCTTGTCATGCAAAGGCAGATTTCATGTTCTCAGTGATCAAGTAGGCCTGCCAGACCAAAATACCTCTGAGGTTTTTACTCCATCCGATGGAACATGGCGCACTGTGGAAGACATCTGGCCTTTTTCTAGGGCAATGCAATTTGCAGCTCAGGTGATCGGAGATAATCGAATATATACTGTTGTAGACTGGGGCGAGAGCTTGATTAAAACAAGGGATACTGAAAAGGGGGAGTGGTACACCATAGGCTCAGTTCCGTCGGTGATTTTTCATGATCACCCTCGGCCGCTGGAGGCTTTTGGCTACGGTTTTGCTGCCTTAAGGCACGAACTATATGTAATGGGAGGGAAGGCTCTCAAGTGGGAACAATCTGGTGCCGGGAGGTTTGACATTGTGAAGTTGGGTTTGGTGAGGGTTTGCAATCCATCGGCTAAGCCATTAAAATGGAGGGAAACTAGACCGATGATTGGGTCAGCTCGTGGCACCGTTATAGGGTGTGCATCCATGGAAGAAGAACCTTCATTTTTAACACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

255

Amino Acids

28.48

Weight (kDa)

7.62

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16250 AT1G16250
fragaria_vesca FvH4_4g21831 FvH4_4g21831 FvH4_4g21831 FvH4_4g21831
malus_domestica MD13G1136500.v1.1 MD16G1131800.v1.1
prunus_persica Prupe.1G209000_v2.0.a1
pyrus_communis pycom13g11890 pycom16g11620
rosa_chinensis RchiOBHm_Chr4g0428071
rosa_laevigata RLG00000007184
rosa_multiflora Rmu_sc0005263.1_g000001
rosa_roxburghii Rroxscaffold_5G00369790
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279300 Rh4BG284700 Rh4CG300400 Rh4DG281800
rosa_wichuraiana Rw4G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 602, 710
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 65, 121, 515
AclWI GGATC 2 cut(s) 14, 161
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 2 cut(s) 70, 467
AfiI CCNNNNNNNGG 3 cut(s) 317, 695, 720
AflII CTTAAG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 377, 429, 704
AluI AGCT 3 cut(s) 377, 429, 704
AlwI GGATC 2 cut(s) 14, 161
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 4 cut(s) 118, 274, 347, 512
ApeKI GCWGC 2 cut(s) 374, 542
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 39, 118
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 4 cut(s) 394, 497, 502, 649
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 602, 710
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 386, 529
BccI CCATC 4 cut(s) 211, 311, 319, 661
BciVI GTATCC 1 cut(s) 439
BclI TGATCA 2 cut(s) 265, 502
BcnI CCSGG 1 cut(s) 607
BfaI CTAG 2 cut(s) 357, 684
BfrI CTTAAG 1 cut(s) 547
BfuI GTATCC 1 cut(s) 439
BisI GCNGC 4 cut(s) 121, 375, 515, 543
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 4 cut(s) 122, 376, 516, 544
Bme1390I CCNGG 1 cut(s) 607
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 39, 118
BmiI GGNNCC 3 cut(s) 119, 604, 712
BmrFI CCNGG 1 cut(s) 607
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 539
Bpu10I CCTNAGC 2 cut(s) 226, 378
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 139, 156, 509, 732
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 695, 720
Bse1I ACTGG 2 cut(s) 42, 422
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 4 cut(s) 139, 156, 509, 732
BseGI GGATG 2 cut(s) 311, 728
BseLI CCNNNNNNNGG 3 cut(s) 317, 695, 720
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 5 cut(s) 227, 274, 288, 392, 492
BseNI ACTGG 2 cut(s) 42, 422
BseRI GAGGAG 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 386, 529
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 4 cut(s) 120, 276, 349, 514
BshNI GGYRCC 2 cut(s) 602, 710
BsiEI CGRYCG 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 3 cut(s) 317, 695, 720
BsnI GGCC 4 cut(s) 120, 276, 349, 514
BsoBI CYCGRG 1 cut(s) 138
Bsp143I GATC 5 cut(s) 19, 166, 265, 384, 502
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 3 cut(s) 65, 121, 515
BspANI GGCC 4 cut(s) 120, 276, 349, 514
BspCNI CTCAG 5 cut(s) 226, 273, 289, 391, 491
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 119, 604, 712
BspPI GGATC 2 cut(s) 14, 161
BspT107I GGYRCC 2 cut(s) 602, 710
BspTI CTTAAG 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 42, 422
BssECI CCNNGG 4 cut(s) 139, 156, 509, 732
BssMI GATC 5 cut(s) 19, 166, 265, 384, 502
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 705
Bst4CI ACNGT 5 cut(s) 334, 409, 536, 715, 762
BstAFI CTTAAG 1 cut(s) 547
BstC8I GCNNGC 4 cut(s) 52, 56, 147, 278
BstDEI CTNAG 7 cut(s) 213, 226, 260, 297, 378, 478, 660
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 2 cut(s) 311, 728
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 22, 169, 268, 387, 505
BstMBI GATC 5 cut(s) 19, 166, 265, 384, 502
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 3 cut(s) 64, 202, 237
BstNSI RCATGY 2 cut(s) 58, 84
BstSCI CCNGG 1 cut(s) 605
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 386, 529
BstV2I GAAGAC 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 672
BstZI CGGCCG 1 cut(s) 512
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 4 cut(s) 120, 276, 349, 514
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 2 cut(s) 311, 728
BtsIMutI CAGTG 3 cut(s) 49, 268, 330
Cac8I GCNNGC 4 cut(s) 52, 56, 147, 278
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 39, 118
Csp6I GTAC 2 cut(s) 69, 466
CviAII CATG 8 cut(s) 55, 81, 202, 237, 254, 324, 500, 733
CviQI GTAC 2 cut(s) 69, 466
DdeI CTNAG 7 cut(s) 213, 226, 260, 297, 378, 478, 660
DpnI GATC 5 cut(s) 21, 168, 267, 386, 504
DpnII GATC 5 cut(s) 19, 166, 265, 384, 502
EaeI YGGCCR 1 cut(s) 512
EagI CGGCCG 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 732
Eco147I AGGCCT 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 8 cut(s) 58, 84, 205, 240, 257, 327, 503, 736
FatI CATG 8 cut(s) 54, 80, 201, 236, 253, 323, 499, 732
FbaI TGATCA 2 cut(s) 265, 502
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 121, 375, 515, 543
FokI GGATG 2 cut(s) 298, 715
Fsp4HI GCNGC 4 cut(s) 121, 375, 515, 543
FspBI CTAG 2 cut(s) 357, 684
GlaI GCGC 1 cut(s) 329
GluI GCNGC 4 cut(s) 121, 375, 515, 543
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 4 cut(s) 120, 276, 349, 514
HapII CCGG 1 cut(s) 606
HhaI GCGC 1 cut(s) 330
Hin1II CATG 8 cut(s) 58, 84, 205, 240, 257, 327, 503, 736
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HpaII CCGG 1 cut(s) 606
HphI GGTGA 4 cut(s) 394, 497, 502, 649
Hpy166II GTNNAC 2 cut(s) 415, 468
Hpy188I TCNGA 4 cut(s) 216, 298, 316, 389
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 415, 468
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 571, 756
HpyCH4III ACNGT 5 cut(s) 334, 409, 536, 715, 762
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 8 cut(s) 4, 80, 135, 240, 367, 374, 648, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 202, 237
HpyF3I CTNAG 7 cut(s) 213, 226, 260, 297, 378, 478, 660
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 8 cut(s) 58, 84, 205, 240, 257, 327, 503, 736
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 2 cut(s) 265, 502
Kzo9I GATC 5 cut(s) 19, 166, 265, 384, 502
Lsp1109I GCAGC 2 cut(s) 386, 529
LweI GCATC 1 cut(s) 737
MaeI CTAG 2 cut(s) 357, 684
MaeII ACGT 1 cut(s) 108
MalI GATC 5 cut(s) 21, 168, 267, 386, 504
MboI GATC 5 cut(s) 19, 166, 265, 384, 502
MboII GAAGA 3 cut(s) 350, 749, 752
MluCI AATT 3 cut(s) 9, 102, 368
MseI TTAA 5 cut(s) 27, 435, 548, 668, 755
MslI CAYNNNNRTG 1 cut(s) 670
MspA1I CMGCKG 1 cut(s) 517
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 64, 202, 237
NciI CCSGG 1 cut(s) 607
NcoI CCATGG 1 cut(s) 732
NdeII GATC 5 cut(s) 19, 166, 265, 384, 502
NlaIII CATG 8 cut(s) 58, 84, 205, 240, 257, 327, 503, 736
NlaIV GGNNCC 3 cut(s) 119, 604, 712
NmeAIII GCCGAG 2 cut(s) 181, 490
NspI RCATGY 2 cut(s) 58, 84
PaeI GCATGC 1 cut(s) 58
PagI TCATGA 1 cut(s) 499
PceI AGGCCT 1 cut(s) 276
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 4 cut(s) 122, 376, 516, 544
PspN4I GGNNCC 3 cut(s) 119, 604, 712
PspPI GGNCC 2 cut(s) 39, 118
RsaI GTAC 2 cut(s) 70, 467
RsaNI GTAC 2 cut(s) 69, 466
RseI CAYNNNNRTG 1 cut(s) 670
SaqAI TTAA 5 cut(s) 27, 435, 548, 668, 755
SatI GCNGC 4 cut(s) 121, 375, 515, 543
Sau3AI GATC 5 cut(s) 19, 166, 265, 384, 502
Sau96I GGNCC 2 cut(s) 39, 118
ScrFI CCNGG 1 cut(s) 607
SfaNI GCATC 1 cut(s) 737
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 670
SmlI CTYRAG 2 cut(s) 547, 584
SmoI CTYRAG 2 cut(s) 547, 584
SphI GCATGC 1 cut(s) 58
Sse9I AATT 3 cut(s) 9, 102, 368
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 3 cut(s) 65, 121, 515
SspMI CTAG 2 cut(s) 357, 684
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 605
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 5 cut(s) 334, 409, 536, 715, 762
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 397
TaqII GACCGA 1 cut(s) 703
TasI AATT 3 cut(s) 9, 102, 368
TauI GCSGC 2 cut(s) 123, 517
Tru1I TTAA 5 cut(s) 27, 435, 548, 668, 755
Tru9I TTAA 5 cut(s) 27, 435, 548, 668, 755
TscAI CASTG 3 cut(s) 49, 268, 337
TseI GCWGC 2 cut(s) 374, 542
TspDTI ATGAA 3 cut(s) 242, 488, 738
TspGWI ACGGA 2 cut(s) 12, 474
TspRI CASTG 3 cut(s) 49, 268, 337
Van91I CCANNNNNTGG 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 102
XceI RCATGY 2 cut(s) 58, 84
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 357, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.