MD13G1182200.v1.1

Mediator of RNA polymerase II transcription subunit 33A-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
15239979 .. 15246417
6439 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1182200.v1.1.491

Sequence Viewer

Length: 3957 bp
ATGGCGGATCCCGAACTGAGCAGCCTCTGGGATGTTGTGATAATGCAGACCAAGGAGGCTCAAGAAAAGGGTAGTGATCCTCTTCTTTGGTCGATTGAAGTCTCGTCGAATTTGGCCTCTGCCGGGGTGTCCCTGCCATCTATAGAGCTCGCCGACGTTTTGGTTTCGCATATTTGTTGGGAAAACAACGTGCCGATTATGTGGAAGTTTCTTGAGAAGGCCTTGGTTTTCAACATGGTGCCCTCCATGCTTGTTCTTGCTTTGCTTTCTTCCAGGGTTATTCCGAATCGACGTGTCCAGCCAATAGCATATAGGCTTTACATGGAGCTCCTCAAGAGACATGCTTTTTCACTGAAATCTCAAATTAAAGGGCCTAGTTATCAACAGGTTATGATATCAATAGATACTATTCTTAATTTGTCCCAGACATTTGGGTTGCAAACAACCGAAGCTGGGACTACTGTGGTTGCGTTCATCTTCTCAACCGTGTGGCAGTTGCTCGATTCATCGTTAGACGATGAGGGGTTACTGGAACTTGCTCCGGAAAAGAAGTCCATATGGCCAACTAAACCCCAAGACATGGACATAGACGGTCTCGAAAATCATCATGAGGAGCGGAATGAACAATATGAGAGATTGCAGAGTCGTAACACTGTGATGGCCATTGAGTTAATCGCGGAGTTTCTGCAAAATCTATTGACTTCCAAGATTCTTAACTTGGCGAAACGAAACATGCTTCAACACTGGGAAGCTTTTGTTAAGCGATTGCAAGTGCTTGCCGAAAAATCATCGGCGTTGAAAAATACCAAACTTACTAGTCCTGAGGAACTTCTGAAGTTGGCTTCAAACATTTGCATGAGCTCGCAAAAATCCAAATTGCGCTCGGTGCATAAGTGCCATTCGATTATGGATTCTTCGGATGGAATATGCCATGGAACCGGTCGCTCAACCATATGGCTTCCCCTTGATCTGGTGCTAGAAGATGCCCTGAATGCTACACAGATCAATGCCACAAGTTCCATTGAGGTTATCACCGGTTTGATGAAGGTCCTTCAAGCCATCAACTGTGCAACTTGGCATGACACCTTCTTAGGCCTATGGATTGCAGCACTTCGTCTAGTCCAAAGGGAAAGGGAGCCTCTTGAGTCCCCTTTTCCTCACTTAGAGTCCCGCTTATGCATGTTGCTCTCTATCACCACTCTTGTGGTTGCTGGCCTTATCGAAGAAGATGAAAGCGCGAAAGTGGACACGACAGAATACAGCTTTGCCAATCACTCGAGACGACAAAAGGTGACAGGGAAGTCGCGCGATGATTTAGTTTCCAGCTTACAAATGCTGGGAAATTTCATAGGACTGCTGGCTCCCCCTCGTTCAGTTGTTTCTGCAGCAAACAGGGCTGCTGCGAAAGCAATGTTCTTCATCTCAGGGACGAGGGTTGAAAGTGCACACTTGGATTGCATCAGCACGAACGACAGCTCAACGGATTGCTCAGGAAACATGCGACATCTGATAGTTGAGGCTTGCATAGCAAGAAATCTAATAGACACGTCGGCATATTTCTGGCCGGGCTATGTGAAAGGAGGCATCAATGGAATGCCTTCTAATATACCTGCTGATAAAGTTCCTGGGTGGTCCTCATTGATGCAGGGGGCAGAACTTACTCCATTGTTGACAAAGGAATTGATTTCAATTCCTGCACCAAGTTTAACAGAACTGGAGAAAATATATGAGATAGCCATCAACGGATCAGATTCTGAGAAAATATCAGCAGTTACCGTTCTTTGTGGGGCCTCCCTGAATCAGGGTTGGAATATACAAGAACACACTGCCCATTTTATTATCAGGCTGTTGTCTCCTCCATGTCCTGCAAATTATTCCGGCAGCGGCAGCGGCAGCCATCTGATCGGTTATGCTCCGTTTCTGAATGCCCTTGTTGTGGGGATATCGTCCATCGACTGCATCAAGATTTTCTCACTCCTTGGCATGGTTCCACAACTAGCATGCTCAGTGATGGCGATCTGTGAGACTTTCGGGTCATGTGTACCTAATGAAACTTGGAGTAGCACACCAGGGACAGAAACCTCTGCTCATGCTGTATTTTCTAATGGATTCACTCTTATTTTGAAACTGTGGAGGTTTAATCATTGCTTTTCCGACCAACTAGGATACGTTCCAACTGTTCAATCCAACCTTACTCCCGAATACTTTCTGTTAGTACGAAACTCCCACCTAGTATCCTCTGAAAAGGTCCGCCAGGATCCTGAGAAAAGGAGACTTGCAGCAGTTTCAAGCTCATCATCTGCACAGCCCATCTTCATTGATTCATTCCCGAAATTAAAAGCCTGGTACATGCAGCATAATGCTTGCATAGCTTCCACCCCCCCTGGACTCACCCATGGAAACCCCATTCATCGCCATGTTGATGAGCTTTTAAACATGATGTTCAAAGACAAAGAACAAGGAAGAGATTCTAATGCTTCTGTTAGTGGTAGTCCGTCTAAAGAAGCAGACGAAGATACTTATTTAAGAAACTCTGCAGCTTGGGATATTCTTGCAGCTGTTCCGTTTGTAGCCGATGCTGCTTTAACAGCTTGTAACCATGGGAGACTCACTCCCCGAAAACTGGCAACGGGGCTTAAAGTCTTGGTTGATTTTCTTCCTGCATCTTTGGGAACCATTGTGAGCTACTTATCAGCTGAAATACGAAGGGGTGTTTGGAAACCAGCTTATATGAACGGAACAGATTGGCCCTGTCCTGATGCAAATCTGCCAAATATTGTGGAGAAGATCAAAATAATTGTAGCTGCCACTTCTGTTGACGTCCCAAGCACTGCTCATTCAGAAGGAAACTGTCAAGCTACATTACCGTTGCCCCTGGCTGCCTTAGTAAGCCTTACTATAACGTATAAAACTGACAGAGATTCAAAACGATACCTCGATTTATGCACCGTGGCCATGGCCTCCATTGCAGCTGGTTGCCCCTGGCCCTGCATGCCGATTGTTTTTTCACTCTGGACCCAGAAAGCAAAGCGTTGGGGCAACCACTTTGTCTTCTCTGCATCTCGTGCTGTCTTCCTCCAACACCCCAATGCTCTGATCCAGGTTCTTAAGAGCTGCTTCACTGCGACACTTGGCCTGCAGTCCTCTCCTCTCTCATACAATGGAGGTATTGGAGCTCTTCTTGCCCATGGAATTGGATCTCACATCCATGGAAGGGTTTCTCCTGTTGCCCCTGGGATCCTCTATCTACATGTTTATCCATATTTATCGGACATTGTCTTCTTGAATAAAGAGATTGTTTCCCTCATGATGTATTCCGTGAGTGAGATAACAGGAGGACAGGTTCCTACCGAGAGATGCAAGAGACTGAAGGCAGCAAAGAATGCAATGATAAAAGGACAATATCACATGGCTTCAAACCTCACTCGGGGTAAACTTATGGCTTCACTTGCGGCTTCTTTAGTATGGTTATCAGGAGGCTTAGATCTGGTTCAGTCATTGTTTAAAGAATTTCTGCCTTCATGGTTTGTATCTATCCACAGTTTCAGACAAGATGGAGAATCAAACGGAGATGCATGGTTAAGGGGTTATGTGCTTGCTTACTTTGCATCGCTGTGTGGAGGCTTTGTATGGGGTATTGACTCATCATCCTGGGGATCCAAGCGGCGTCCAAAGATTCTTGGAACCCACATGGAATTTCTTGCAAGTGCACTAGATGGTCAGATATCTCTTGGCTGTGACCAGATCACCTGGCGCGCGTATGTCTTGGGATTCATGAGCCTCATGGTGGTTTGCATGCCGACTTGGATGCTGGACGTTGACGTAGATGCCTTGAAGAGAATCAGTAAGCGGCTGAGACAGTGGAATGAGGAGGAGCTTGCTCTAGATTTGCTGGGGATTGGCGGTGTTGATTTCATGGGTGCAGCTGCAGAAATGATAATTGAAAGCGAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1319

Amino Acids

144.83

Weight (kDa)

6.4

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1300, 2032
AatII GACGTC 1 cut(s) 2823
Acc36I ACCTGC 1 cut(s) 1618
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 616
AccII CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
AccIII TCCGGA 1 cut(s) 541
AcoI YGGCCR 4 cut(s) 560, 660, 1562, 2952
AcsI RAATTY 4 cut(s) 109, 1342, 3509, 3695
AcuI CTGAAG 2 cut(s) 854, 3389
AcyI GRCGYC 2 cut(s) 2820, 3667
AfaI GTAC 3 cut(s) 2043, 2217, 2348
AflII CTTAAG 1 cut(s) 3107
AflIII ACRYGT 3 cut(s) 292, 1545, 3250
AgeI ACCGGT 2 cut(s) 938, 1034
AhlI ACTAGT 1 cut(s) 815
AjiI CACGTC 2 cut(s) 293, 1548
AjuI GAANNNNNNNTTGG 2 cut(s) 2698, 2730
AleI CACNNNNGTG 1 cut(s) 1202
AloI GAACNNNNNNTCC 2 cut(s) 3327, 3359
Alw21I GWGCWC 6 cut(s) 150, 330, 863, 1447, 3178, 3712
Alw44I GTGCAC 2 cut(s) 1443, 3708
AlwNI CAGNNNCTG 2 cut(s) 27, 1754
Ama87I CYCGRG 2 cut(s) 1276, 3426
Aor13HI TCCGGA 1 cut(s) 541
ApaLI GTGCAC 2 cut(s) 1443, 3708
ApoI RAATTY 4 cut(s) 109, 1342, 3509, 3695
AsiGI ACCGGT 2 cut(s) 938, 1034
Asp700I GAANNNNTTC 4 cut(s) 1597, 2205, 2467, 3217
AspLEI GCGC 5 cut(s) 882, 1238, 1308, 3756, 3758
AspS9I GGNCC 8 cut(s) 371, 1048, 1632, 1788, 2248, 2748, 2985, 3015
AsuC2I CCSGG 2 cut(s) 124, 1566
AsuHPI GGTGA 5 cut(s) 1024, 1186, 1303, 2383, 3739
AvaI CYCGRG 2 cut(s) 1276, 3426
AvaII GGWCC 4 cut(s) 1048, 1632, 2248, 3015
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 3 cut(s) 243, 1447, 3712
BalI TGGCCA 3 cut(s) 562, 662, 2954
BamHI GGATCC 4 cut(s) 7, 2257, 3237, 3656
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 4 cut(s) 150, 330, 863, 3178
BauI CACGAG 1 cut(s) 3063
BbsI GAAGAC 3 cut(s) 3043, 3064, 3271
Bbv12I GWGCWC 6 cut(s) 150, 330, 863, 1447, 3178, 3712
BceAI ACGGC 1 cut(s) 3937
BcgI CGANNNNNNTGC 2 cut(s) 3790, 3824
BciVI GTATCC 2 cut(s) 2159, 2245
BcnI CCSGG 2 cut(s) 124, 1566
BcuI ACTAGT 1 cut(s) 815
BfaI CTAG 9 cut(s) 375, 816, 977, 1118, 1997, 2162, 2231, 3713, 3884
BfmI CTRYAG 5 cut(s) 141, 1383, 2535, 3137, 3927
BfrI CTTAAG 1 cut(s) 3107
BfuAI ACCTGC 1 cut(s) 1618
BfuI GTATCC 2 cut(s) 2159, 2245
BglII AGATCT 1 cut(s) 3484
Bme18I GGWCC 4 cut(s) 1048, 1632, 2248, 3015
BmeT110I CYCGRG 2 cut(s) 1276, 3426
BmgBI CACGTC 2 cut(s) 293, 1548
BmgT120I GGNCC 8 cut(s) 371, 1048, 1632, 1788, 2248, 2748, 2985, 3015
BmrI ACTGGG 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 3 cut(s) 3043, 3064, 3271
BplI GAGNNNNNCTC 2 cut(s) 2596, 2628
BpmI CTGGAG 1 cut(s) 1736
Bpu10I CCTNAGC 1 cut(s) 1489
BpuEI CTTGAG 4 cut(s) 45, 233, 317, 1163
BpuMI CCSGG 2 cut(s) 124, 1566
BsaBI GATNNNNATC 3 cut(s) 1736, 2015, 2763
BsaHI GRCGYC 2 cut(s) 2820, 3667
BsaI GGTCTC 1 cut(s) 599
BsaWI WCCGGW 3 cut(s) 541, 938, 1034
BsaXI ACNNNNNCTCC 4 cut(s) 3327, 3357, 3612, 3642
Bse118I RCCGGY 2 cut(s) 938, 1034
Bse1I ACTGG 4 cut(s) 534, 749, 1719, 2628
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 4 cut(s) 1416, 2143, 2964, 3393
Bse8I GATNNNNATC 3 cut(s) 1736, 2015, 2763
BseAI TCCGGA 1 cut(s) 541
BseGI GGATG 5 cut(s) 37, 925, 3204, 3647, 3813
BseJI GATNNNNATC 3 cut(s) 1736, 2015, 2763
BseMI GCAATG 4 cut(s) 1416, 2143, 2964, 3393
BseMII CTCAG 8 cut(s) 8, 813, 1437, 1503, 1746, 2019, 2253, 3845
BseNI ACTGG 4 cut(s) 534, 749, 1719, 2628
BsePI GCGCGC 1 cut(s) 3754
BseRI GAGGAG 6 cut(s) 320, 626, 1845, 3138, 3884, 3887
BseSI GKGCMC 3 cut(s) 243, 1447, 3712
BseYI CCCAGC 3 cut(s) 452, 1336, 3892
BsgI GTGCAG 3 cut(s) 1680, 2286, 3942
Bsh1236I CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
Bsh1285I CGRYCG 1 cut(s) 943
BshNI GGYRCC 1 cut(s) 238
BshTI ACCGGT 2 cut(s) 938, 1034
BsiEI CGRYCG 1 cut(s) 943
BsiHKAI GWGCWC 6 cut(s) 150, 330, 863, 1447, 3178, 3712
BsiHKCI CYCGRG 2 cut(s) 1276, 3426
BsiSI CCGG 6 cut(s) 123, 542, 939, 1035, 1565, 1878
BslFI GGGAC 8 cut(s) 115, 406, 469, 1132, 1153, 1441, 2086, 2807
BsmBI CGTCTC 1 cut(s) 1273
BsmFI GGGAC 8 cut(s) 115, 406, 469, 1132, 1153, 1441, 2086, 2807
BsmI GAATGC 4 cut(s) 997, 1599, 1930, 3388
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 2 cut(s) 1276, 3426
Bsp1286I GDGCHC 7 cut(s) 150, 243, 330, 863, 1447, 3178, 3712
Bsp13I TCCGGA 1 cut(s) 541
Bsp19I CCATGG 6 cut(s) 931, 2395, 2599, 2955, 3187, 3208
BspCNI CTCAG 8 cut(s) 9, 814, 1436, 1502, 1747, 2018, 2254, 3846
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
BspHI TCATGA 3 cut(s) 607, 3306, 3774
BspMAI CTGCAG 4 cut(s) 1387, 2539, 3141, 3931
BspMI ACCTGC 1 cut(s) 1618
BspQI GCTCTTC 1 cut(s) 3183
BspT107I GGYRCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 3107
BspTNI GGTCTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 616
BsrDI GCAATG 4 cut(s) 1416, 2143, 2964, 3393
BsrFI RCCGGY 2 cut(s) 938, 1034
BsrI ACTGG 4 cut(s) 534, 749, 1719, 2628
BssAI RCCGGY 2 cut(s) 938, 1034
BssHII GCGCGC 1 cut(s) 3754
BssNI GRCGYC 2 cut(s) 2820, 3667
BssSI CACGAG 1 cut(s) 3063
BssT1I CCWWGG 9 cut(s) 51, 222, 931, 1978, 2395, 2599, 2955, 3187, 3208
Bst2BI CACGAG 1 cut(s) 3063
Bst6I CTCTTC 4 cut(s) 87, 2458, 3183, 3830
BstACI GRCGYC 2 cut(s) 2820, 3667
BstAFI CTTAAG 1 cut(s) 3107
BstAPI GCANNNNNTGC 2 cut(s) 3065, 3383
BstDSI CCRYGG 7 cut(s) 931, 2395, 2599, 2949, 2955, 3187, 3208
BstENI CCTNNNNNAGG 1 cut(s) 1799
BstF5I GGATG 5 cut(s) 37, 925, 3204, 3647, 3813
BstFNI CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
BstHHI GCGC 5 cut(s) 882, 1238, 1308, 3756, 3758
BstMCI CGRYCG 1 cut(s) 943
BstNSI RCATGY 9 cut(s) 344, 736, 1183, 1501, 2004, 2353, 2995, 3254, 3799
BstSFI CTRYAG 5 cut(s) 141, 1383, 2535, 3137, 3927
BstSLI GKGCMC 3 cut(s) 243, 1447, 3712
BstUI CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
BstV2I GAAGAC 3 cut(s) 3043, 3064, 3271
BstX2I RGATCY 6 cut(s) 7, 2257, 3197, 3237, 3484, 3656
BstXI CCANNNNNNTGG 3 cut(s) 431, 1204, 3194
BstYI RGATCY 6 cut(s) 7, 2257, 3197, 3237, 3484, 3656
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 2 cut(s) 2159, 2245
BtgI CCRYGG 7 cut(s) 931, 2395, 2599, 2949, 2955, 3187, 3208
BtgZI GCGATG 3 cut(s) 1323, 2396, 3594
BtrI CACGTC 2 cut(s) 293, 1548
BtsCI GGATG 5 cut(s) 37, 925, 3204, 3647, 3813
BtsI GCAGTG 3 cut(s) 1824, 2829, 3120
BtsIMutI CAGTG 8 cut(s) 350, 651, 742, 1824, 2013, 2829, 3120, 3866
BveI ACCTGC 1 cut(s) 1618
CaiI CAGNNNCTG 2 cut(s) 27, 1754
CciI TCATGA 3 cut(s) 607, 3306, 3774
CfoI GCGC 5 cut(s) 882, 1238, 1308, 3756, 3758
Cfr10I RCCGGY 2 cut(s) 938, 1034
Cfr13I GGNCC 8 cut(s) 371, 1048, 1632, 1788, 2248, 2748, 2985, 3015
CseI GACGC 1 cut(s) 3656
Csp6I GTAC 3 cut(s) 2042, 2216, 2347
CspAI ACCGGT 2 cut(s) 938, 1034
CspCI CAANNNNNGTGG 4 cut(s) 2760, 2795, 2797, 2832
CviQI GTAC 3 cut(s) 2042, 2216, 2347
DraI TTTAAA 2 cut(s) 2433, 3505
DrdI GACNNNNNNGTC 2 cut(s) 1300, 2032
DseDI GACNNNNNNGTC 2 cut(s) 1300, 2032
EaeI YGGCCR 4 cut(s) 560, 660, 1562, 2952
Eam1104I CTCTTC 4 cut(s) 87, 2458, 3183, 3830
EarI CTCTTC 4 cut(s) 87, 2458, 3183, 3830
EciI GGCGGA 2 cut(s) 20, 2240
Ecl136II GAGCTC 4 cut(s) 148, 328, 861, 3176
Eco130I CCWWGG 9 cut(s) 51, 222, 931, 1978, 2395, 2599, 2955, 3187, 3208
Eco147I AGGCCT 2 cut(s) 221, 1095
Eco24I GRGCYC 4 cut(s) 150, 330, 863, 3178
Eco31I GGTCTC 1 cut(s) 599
Eco32I GATATC 3 cut(s) 396, 1944, 3726
Eco47I GGWCC 4 cut(s) 1048, 1632, 2248, 3015
Eco53kI GAGCTC 4 cut(s) 148, 328, 861, 3176
Eco57I CTGAAG 2 cut(s) 854, 3389
Eco81I CCTNAGG 1 cut(s) 822
Eco88I CYCGRG 2 cut(s) 1276, 3426
EcoICRI GAGCTC 4 cut(s) 148, 328, 861, 3176
EcoNI CCTNNNNNAGG 1 cut(s) 1799
EcoO109I RGGNCCY 3 cut(s) 371, 1048, 1788
EcoRV GATATC 3 cut(s) 396, 1944, 3726
EcoT14I CCWWGG 9 cut(s) 51, 222, 931, 1978, 2395, 2599, 2955, 3187, 3208
EcoT22I ATGCAT 2 cut(s) 1181, 3577
EcoT38I GRGCYC 4 cut(s) 150, 330, 863, 3178
ErhI CCWWGG 9 cut(s) 51, 222, 931, 1978, 2395, 2599, 2955, 3187, 3208
Esp3I CGTCTC 1 cut(s) 1273
FalI AAGNNNNNCTT 2 cut(s) 3101, 3133
FaqI GGGAC 8 cut(s) 115, 406, 469, 1132, 1153, 1441, 2086, 2807
FauI CCCGC 1 cut(s) 1178
FauNDI CATATG 2 cut(s) 557, 953
FokI GGATG 5 cut(s) 44, 932, 3191, 3634, 3820
FriOI GRGCYC 4 cut(s) 150, 330, 863, 3178
FspBI CTAG 9 cut(s) 375, 816, 977, 1118, 1997, 2162, 2231, 3713, 3884
GlaI GCGC 5 cut(s) 881, 1237, 1307, 3755, 3757
GsaI CCCAGC 3 cut(s) 456, 1340, 3896
GsuI CTGGAG 1 cut(s) 1736
HapII CCGG 6 cut(s) 123, 542, 939, 1035, 1565, 1878
HgaI GACGC 1 cut(s) 3656
HhaI GCGC 5 cut(s) 882, 1238, 1308, 3756, 3758
Hin1I GRCGYC 2 cut(s) 2820, 3667
Hin6I GCGC 5 cut(s) 880, 1236, 1306, 3754, 3756
HinP1I GCGC 5 cut(s) 880, 1236, 1306, 3754, 3756
HincII GTYRAC 3 cut(s) 1671, 2818, 3820
HindII GTYRAC 3 cut(s) 1671, 2818, 3820
HindIII AAGCTT 1 cut(s) 750
HpaII CCGG 6 cut(s) 123, 542, 939, 1035, 1565, 1878
HphI GGTGA 5 cut(s) 1024, 1186, 1303, 2383, 3739
Hpy166II GTNNAC 8 cut(s) 1246, 1445, 1671, 2042, 2818, 3434, 3710, 3820
Hpy8I GTNNAC 8 cut(s) 1246, 1445, 1671, 2042, 2818, 3434, 3710, 3820
Hpy99I CGWCG 4 cut(s) 109, 158, 294, 1552
HpyCH4IV ACGT 9 cut(s) 156, 189, 292, 1547, 2169, 2820, 2903, 3816, 3822
HpySE526I ACGT 9 cut(s) 156, 189, 292, 1547, 2169, 2820, 2903, 3816, 3822
Hsp92I GRCGYC 2 cut(s) 2820, 3667
HspAI GCGC 5 cut(s) 880, 1236, 1306, 3754, 3756
Kpn2I TCCGGA 1 cut(s) 541
LguI GCTCTTC 1 cut(s) 3183
LmnI GCTCC 9 cut(s) 325, 333, 544, 613, 1135, 1366, 1918, 3173, 3874
MaeI CTAG 9 cut(s) 375, 816, 977, 1118, 1997, 2162, 2231, 3713, 3884
MaeII ACGT 9 cut(s) 156, 189, 292, 1547, 2169, 2820, 2903, 3816, 3822
MaeIII GTNAC 6 cut(s) 525, 647, 1291, 1771, 2594, 3737
MbiI CCGCTC 1 cut(s) 616
MflI RGATCY 6 cut(s) 7, 2257, 3197, 3237, 3484, 3656
MhlI GDGCHC 7 cut(s) 150, 243, 330, 863, 1447, 3178, 3712
MlsI TGGCCA 3 cut(s) 562, 662, 2954
MluNI TGGCCA 3 cut(s) 562, 662, 2954
MlyI GAGTC 6 cut(s) 652, 1154, 1175, 2382, 2601, 3635
MmeI TCCRAC 5 cut(s) 1787, 2178, 2198, 2211, 3103
Mox20I TGGCCA 3 cut(s) 562, 662, 2954
Mph1103I ATGCAT 2 cut(s) 1181, 3577
MroI TCCGGA 1 cut(s) 541
MroXI GAANNNNTTC 4 cut(s) 1597, 2205, 2467, 3217
MscI TGGCCA 3 cut(s) 562, 662, 2954
MslI CAYNNNNRTG 8 cut(s) 656, 854, 1202, 2415, 2421, 3087, 3207, 3613
Msp20I TGGCCA 3 cut(s) 562, 662, 2954
MspA1I CMGCKG 6 cut(s) 1884, 1890, 2558, 2696, 2972, 3926
MspCI CTTAAG 1 cut(s) 3107
MspI CCGG 6 cut(s) 123, 542, 939, 1035, 1565, 1878
Mva1269I GAATGC 4 cut(s) 997, 1599, 1930, 3388
MvnI CGCG 6 cut(s) 677, 1238, 1306, 1308, 3756, 3758
NciI CCSGG 2 cut(s) 124, 1566
NcoI CCATGG 6 cut(s) 931, 2395, 2599, 2955, 3187, 3208
NdeI CATATG 2 cut(s) 557, 953
NmuCI GTSAC 2 cut(s) 1291, 3737
NsiI ATGCAT 2 cut(s) 1181, 3577
NspI RCATGY 9 cut(s) 344, 736, 1183, 1501, 2004, 2353, 2995, 3254, 3799
OliI CACNNNNGTG 1 cut(s) 1202
PaeI GCATGC 3 cut(s) 2004, 2995, 3799
PaeR7I CTCGAG 1 cut(s) 1276
PagI TCATGA 3 cut(s) 607, 3306, 3774
PasI CCCWGGG 1 cut(s) 3233
PauI GCGCGC 1 cut(s) 3754
PceI AGGCCT 2 cut(s) 221, 1095
PciI ACATGT 1 cut(s) 3250
PciSI GCTCTTC 1 cut(s) 3183
PctI GAATGC 4 cut(s) 997, 1599, 1930, 3388
PdmI GAANNNNTTC 4 cut(s) 1597, 2205, 2467, 3217
PflFI GACNNNGTC 1 cut(s) 3275
PflMI CCANNNNNTGG 1 cut(s) 580
PinAI ACCGGT 2 cut(s) 938, 1034
PleI GAGTC 6 cut(s) 651, 1153, 1174, 2382, 2601, 3635
PpsI GAGTC 6 cut(s) 651, 1153, 1174, 2382, 2601, 3635
PpuMI RGGWCCY 1 cut(s) 1048
PscI ACATGT 1 cut(s) 3250
Psp124BI GAGCTC 4 cut(s) 150, 330, 863, 3178
Psp5II RGGWCCY 1 cut(s) 1048
PspFI CCCAGC 3 cut(s) 452, 1336, 3892
PspPI GGNCC 8 cut(s) 371, 1048, 1632, 1788, 2248, 2748, 2985, 3015
PspPPI RGGWCCY 1 cut(s) 1048
PstI CTGCAG 4 cut(s) 1387, 2539, 3141, 3931
PstNI CAGNNNCTG 2 cut(s) 27, 1754
PsuI RGATCY 6 cut(s) 7, 2257, 3197, 3237, 3484, 3656
PsyI GACNNNGTC 1 cut(s) 3275
PteI GCGCGC 1 cut(s) 3754
PvuII CAGCTG 4 cut(s) 2558, 2696, 2972, 3926
RsaI GTAC 3 cut(s) 2043, 2217, 2348
RsaNI GTAC 3 cut(s) 2042, 2216, 2347
RseI CAYNNNNRTG 8 cut(s) 656, 854, 1202, 2415, 2421, 3087, 3207, 3613
SacI GAGCTC 4 cut(s) 150, 330, 863, 3178
SapI GCTCTTC 1 cut(s) 3183
Sau96I GGNCC 8 cut(s) 371, 1048, 1632, 1788, 2248, 2748, 2985, 3015
SchI GAGTC 6 cut(s) 652, 1154, 1175, 2382, 2601, 3635
SduI GDGCHC 7 cut(s) 150, 243, 330, 863, 1447, 3178, 3712
SfcI CTRYAG 5 cut(s) 141, 1383, 2535, 3137, 3927
Sfr274I CTCGAG 1 cut(s) 1276
SinI GGWCC 4 cut(s) 1048, 1632, 2248, 3015
SlaI CTCGAG 1 cut(s) 1276
SmiMI CAYNNNNRTG 8 cut(s) 656, 854, 1202, 2415, 2421, 3087, 3207, 3613
SmlI CTYRAG 6 cut(s) 60, 212, 332, 1142, 1276, 3107
SmoI CTYRAG 6 cut(s) 60, 212, 332, 1142, 1276, 3107
SpeI ACTAGT 1 cut(s) 815
SphI GCATGC 3 cut(s) 2004, 2995, 3799
SseBI AGGCCT 2 cut(s) 221, 1095
SspI AATATT 1 cut(s) 2776
SspMI CTAG 9 cut(s) 375, 816, 977, 1118, 1997, 2162, 2231, 3713, 3884
SstI GAGCTC 4 cut(s) 150, 330, 863, 3178
StuI AGGCCT 2 cut(s) 221, 1095
StyI CCWWGG 9 cut(s) 51, 222, 931, 1978, 2395, 2599, 2955, 3187, 3208
TaiI ACGT 9 cut(s) 159, 192, 295, 1550, 2172, 2823, 2906, 3819, 3825
TauI GCSGC 5 cut(s) 1887, 1893, 3455, 3667, 3853
TscAI CASTG 8 cut(s) 357, 658, 749, 1831, 2013, 2836, 3127, 3866
TseFI GTSAC 2 cut(s) 1291, 3737
Tsp45I GTSAC 2 cut(s) 1291, 3737
TspGWI ACGGA 8 cut(s) 1496, 1758, 1905, 2484, 2553, 2751, 3307, 3582
TspRI CASTG 8 cut(s) 357, 658, 749, 1831, 2013, 2836, 3127, 3866
Tth111I GACNNNGTC 1 cut(s) 3275
Van91I CCANNNNNTGG 1 cut(s) 580
Vha464I CTTAAG 1 cut(s) 3107
VneI GTGCAC 2 cut(s) 1443, 3708
VpaK11BI GGWCC 4 cut(s) 1048, 1632, 2248, 3015
XagI CCTNNNNNAGG 1 cut(s) 1799
XapI RAATTY 4 cut(s) 109, 1342, 3509, 3695
XbaI TCTAGA 1 cut(s) 3883
XceI RCATGY 9 cut(s) 344, 736, 1183, 1501, 2004, 2353, 2995, 3254, 3799
XhoI CTCGAG 1 cut(s) 1276
XmnI GAANNNNTTC 4 cut(s) 1597, 2205, 2467, 3217
XspI CTAG 9 cut(s) 375, 816, 977, 1118, 1997, 2162, 2231, 3713, 3884
ZraI GACGTC 1 cut(s) 2821
Zsp2I ATGCAT 2 cut(s) 1181, 3577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.