Rw4G018240

Mediator of RNA polymerase II transcription subunit 33A-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
40616033 .. 40621561
5529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018240.1

Sequence Viewer

Length: 3933 bp
ATGGCTTTTTCCGAGCAAAGCAGCCTCTGGGATAATGTCATACAGGAAACCAAGGAAGCTCAAGAAAAGGGTAGTGATCCTTTGCTCTGGTCAGTGCAAGTCTCGTCGATTTTGAGCTCGGCAGGGGTGTCCCTGCCCTCAACAGAGCTCGCCAATGTGATGGTCTCATACATTTGTTGGGAAAACAATGTGCCCATTTTGTGGAAGTTTCTCGAAAAGGCCATGGTATACAACATGGTGCCCTCTATGCTTGTTCTTGCACTGCTTTCATCCAGGGTTATTCCAAGTCGACGATTCCAGCCTGCGGCTTATAGACTTTACATGGAGCTCCTAAAGAGACATGCTTTCTCACTCAGATCTCAGATAAATTGGCCTAATTATCAAATGGTTATGAAATCAATAGATGATATCCTTGATTTGTCCCAGACTTTTGGTCTTCAAACTAGTGATGCTGGGACTATTGTCGTTGGGTTCATCTTCTCAACTGTGTGGCAGTTGATTGATGCATCATTAGATGATGAGGGGTTGCTGGAACATGATGACCCAGAAAAGAAGTCTAGATGGGTAATTAAACCCCAAGAAATGGAGATAGACGGTTACGAGAAGGGGAATGAACACTATGAGAGATTGCAGAATCAGAATACTGTGATGGCTATTGAGTTAATCACACAGTTTCTGCAAAACAAGTTGACTTCCAAGATTCTGTACTTGGCAAAACAAAACATGCCTACACACTGGGAGGGTTTTATAAAGCAATTACAGCTGCTCGCAGAAGATTCATCAGCATTGAAACATGCCAAAGTTACTAGTCCTGACACACTTCTGCAGCTGGCTTCTGATATTTGCACAGACTCAACTAAATGCAAACTACGTTCACGTTCAGTGCAAAAGTGCCATGAGATTAGGGATTCTTCTGTTGGACTATGCCATGGAACTGGTCGCTCTACCATATGGCTTCCACTTGATCTGGTACTAGAAGATGCCTTGACTCTTACAAGGGTCATTAATGCAACAAGTCTAATTGATATTCTCACAGGTTTGATCAAGATTCTTCGAGCCATAAATTGTGCCACTTGGCATGACACCTTTTTGTACCTATGGATTGCAGCACTTCGTCTTGTCCAAAGGGAGAGGAATCCTATCGATTCACCTGTGCCTCATCATGATTCGCGCATTAGCATGTTGCTGTCTATCACTACACTCGTGGTTGCCAGTCTTATTGATGAAGATGAAAGTGCAAAAGTAGACAAGACAGATTATAGTTTTGCCAATCAACAGGAGAAACAAAAGGGTACAGGGAAGTCCCACCACGATTTAGTCTCCAGCTTACAAATGCTGGGAAACTTTATAGGACTGCTGGCTCCCCCTCGTTCTGCAGTTTCTGCAGCAAATCGCGCTGCTGCAAAAGCAATGTTCTTTATTTCAGGGACTTGTGTTGAAAGTGCGTACTTGGATTGCATCAGTATGGGCGATGTATCTGTAGACTACTTAGGAAACATGCGTCATCTGATTGTTGAGGCTTGTATAGCAAGAAACCTACTAGACACATCAGCATATTTCTGGCCAGGCTATGTTAAAGGATGCATCAATGAATTACCTTCTAATGTACCTTCAAAAGTGCCTTGTTGGTCATCATTAATGCAGGGGGCACCGCTTACACCAGTAATGACCAAGGCATTGATTTCAACTCCTGCATCAAGCTTAGCAGAGCTCGAGAAGATATTTGAGATAGCTGTCAGTGGATCAGATTATGAAAAGATATCAGCAGCTACCATCCTTTGTGGAGCCTCCCTCACTCAAGGTTGGAATGTACAGGAACACACTGCTCATTTTATTATTAGGTTGTTGTCTCCTCCATCTTCTACAAATCATTCTGAAGGTGGCAGCCATCTGATAGGTCATGCTTCAGTGCTAAATGCACTTCTTTCTGGGATCTCTACCATTGATAGTATCAAGATTTTTTTGCTACTTGGCATGGTTCCTCAACTAGCATGTTCATTAATGGCAATCTGTGAGATTTTTGGGTCATGTGTACCCAGTAGTTCAGGCAGTCAGACAACAGAAAATGAGATTTCTGCTCATACTGTGTTTTCTAATGGATTTACTCTTTTTCTAAAACTGTGGAGGTTTGATCGTTGCTTTGGAGCTCGACCAGCAGATATACCAACAGTTGGATCCAACCGTACTCCTGAATACCTTCTACTAATACGAAACTCCCACCTTACTTCGTCTGGAGATGCCCCCAAGGATCGTAATAAAAGGAGATTGGCATCAGTTGCAAGCTCATCATCTGCACACCCCATCTACATTGATTCATTTCCAAAATTGAAAGCCTGGTACAATCAGCACAATGCATGCATATCTTCAACCCTCTCTGGAGTTGCCCGCGGAAATCCTCTTCCTCACCATGTTGATGAGCTTTTCAACTTTATGTTCAAAGAGAAGGAGCAAGGAAGACAGTCTTTAGATTCTAATAATTCTGGAAGTTGCAGTTCATTTAGAGAAGCAGATGAATCTATTTACTTAGGTAAACTGCCTGCTTGGGAGATTCTGGCAGCTGTTCACTATGTGGTTGATGCTGCTTTAACAGCTTGTGCCAATGGAAGACTCTCTCCCCGCAAATTGGCTATGGGGCTCAAAGTCTTGGTTGATTTTCTTCCTGCATCTTTGGGAACCATTGTGAGCTACTTGACAGCTGAAATAACCAGGGGTACTTGGAAACCAGCTTCAATGAATGGAACAGATTGGCCCAGCCCTGATGCAAATTTGTCATACGTAGAGGAAAAGATAAAGACAATTGTAGCTGCCACTGCTGTTGATGTCTCAAGCACTTCTTCAGGAAGCTGTCAAGCTACACTGCCATTGCCCCTGGCTGCCTTATTGTGCCTGACTATAGCATATAAAACTGATAGAGATTCAATACGGTATCTGGATTTGCCTGCACGGGTATTGGCTTCCGTCTCAGCAGGTTGCCCGTGGCCTTGCATGCCAATTGTGTATTCACTGTGGAGCCAGAAAGCAAAGCGTTGGAGTGCATTCTTTGTGTTTTCTTCATCTCGTACTGTCTTCCTCCAAAACCAACAGGCTTTTGTCCAGCTTCTTAGAAGCTGCTTCACTGCCACACTTGGCCTGCATTCCAATCCTCTCTCACACAATGGTGGTATTGGAGCTCTTCTTGGCCATGGGATCGTATCTCATGCTCACGACAGTGTTTCTCCTGTTTCCCCTGGGATTCTTTACATGCATGTTTATCCACATTTATCTGACGTCTTCTTCTTGAACAAAGAGATTGTTTCCCTCTTGATAGAATGTGTAGGAGAGATAACAAGAAGCGGGTTTAATGTGGAGGAATGCAAGAAAATGAAGAGGATACAGGGACAGTTTCAACTGGCTTCAAACTTGACACGGGGTAAGCTTGTGGCTTCCCTTGCAGCATCTTTAGTATGGTCATCCGGAGGCTCAGGTCTGGTGCAGTCATTGTTCGAAGAGTTTTTACCATCGTGGTTTGTATCTGATCACAGCTCCAGTCAAGGAGAATCGCCACAAGTTGCATGGCTAAAAGGATATGTGGTTGCATATTTTGCATCCTTGTGCGGAGCTTTCGTTTGGGGTGTTGACTCATCATCATGGGGATCCAAGCGTCGTCGGAAGATCCTTGGATCCCACATGGAATTTATTGTAACTGTACTAAAGGGGCAGATAATACTTCGTTGTGATGAGATCACTTGGCGAGCTTATGTGTTGGGATTCATAAGCTTGATGGTGATTTGCATGCCAACTTTGGTGTTGGAGGTGGATGTGCATGTCTTGAAGATAATCAGTAAGAAGCTGAATGAGTGGAATGAGACGGAGCTTGCTATGGAATTGCTGGGGATTGGTGGTCTTGATTTCATGGGTGCAGCTGTAGAAATGATAATCGAATGCCAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1310

Amino Acids

144.2

Weight (kDa)

6.42

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AatII GACGTC 1 cut(s) 3270
Acc36I ACCTGC 1 cut(s) 2957
AccB1I GGYRCC 2 cut(s) 238, 1648
AccB7I CCANNNNNTGG 3 cut(s) 201, 583, 2171
AccI GTMKAC 4 cut(s) 228, 289, 1245, 1482
AccII CGCG 3 cut(s) 1171, 1395, 2388
AccIII TCCGGA 1 cut(s) 3452
AciI CCGC 7 cut(s) 305, 1652, 2386, 2388, 2617, 3333, 3594
AcoI YGGCCR 2 cut(s) 1562, 3178
AcsI RAATTY 2 cut(s) 2764, 3671
AcuI CTGAAG 3 cut(s) 1890, 1896, 2820
AcyI GRCGYC 1 cut(s) 3267
AdeI CACNNNGTG 1 cut(s) 2569
AfiI CCNNNNNNNGG 5 cut(s) 201, 304, 583, 2171, 2623
AhdI GACNNNNNGTC 1 cut(s) 432
AhlI ACTAGT 2 cut(s) 443, 806
AjnI CCWGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
AjuI GAANNNNNNNTTGG 2 cut(s) 2983, 3015
AleI CACNNNNGTG 2 cut(s) 3156, 3207
Alw21I GWGCWC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
Alw26I GTCTC 8 cut(s) 106, 169, 331, 1324, 1854, 2827, 2965, 3839
AlwNI CAGNNNCTG 3 cut(s) 27, 676, 1382
Ama87I CYCGRG 1 cut(s) 1712
Aor13HI TCCGGA 1 cut(s) 3452
AoxI GGCC 7 cut(s) 219, 371, 1562, 2747, 2978, 3127, 3178
ApoI RAATTY 2 cut(s) 2764, 3671
AseI ATTAAT 3 cut(s) 1005, 1637, 2000
Asp700I GAANNNNTTC 1 cut(s) 2196
AspLEI GCGC 2 cut(s) 1173, 1397
AspS9I GGNCC 1 cut(s) 2748
AsuHPI GGTGA 3 cut(s) 1140, 2396, 3775
AsuII TTCGAA 1 cut(s) 3483
AvaI CYCGRG 1 cut(s) 1712
BaeGI GKGCMC 3 cut(s) 195, 243, 1651
BalI TGGCCA 2 cut(s) 1564, 3180
BamHI GGATCC 3 cut(s) 2174, 3632, 3659
BanI GGYRCC 2 cut(s) 238, 1648
BanII GRGCYC 7 cut(s) 119, 150, 330, 1713, 2149, 2637, 3172
BarI GAAGNNNNNNTAC 2 cut(s) 3477, 3509
BauI CACGAG 1 cut(s) 1202
BbsI GAAGAC 5 cut(s) 428, 2461, 2611, 3058, 3262
Bbv12I GWGCWC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
BccI CCATC 9 cut(s) 154, 555, 643, 1781, 1864, 1896, 2309, 3505, 3754
BciT130I CCWGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
BciVI GTATCC 1 cut(s) 3363
BclI TGATCA 2 cut(s) 1041, 3514
BcoDI GTCTC 8 cut(s) 106, 169, 331, 1324, 1854, 2827, 2965, 3839
BcuI ACTAGT 2 cut(s) 443, 806
BfaI CTAG 6 cut(s) 444, 558, 807, 974, 1541, 1988
BfmI CTRYAG 6 cut(s) 824, 1374, 1383, 1479, 2892, 3903
BfuAI ACCTGC 1 cut(s) 2957
BfuI GTATCC 1 cut(s) 3363
BglII AGATCT 1 cut(s) 356
BlpI GCTNAGC 1 cut(s) 1702
Bme1390I CCNGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
BmeRI GACNNNNNGTC 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 1712
BmgT120I GGNCC 1 cut(s) 2748
BmrFI CCNGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
BmrI ACTGGG 2 cut(s) 745, 2031
BmuI ACTGGG 2 cut(s) 745, 2031
BoxI GACNNNNGTC 1 cut(s) 461
BpiI GAAGAC 5 cut(s) 428, 2461, 2611, 3058, 3262
BplI GAGNNNNNCTC 2 cut(s) 1776, 1808
BpmI CTGGAG 4 cut(s) 1306, 2253, 2397, 3508
Bpu10I CCTNAGC 1 cut(s) 3460
Bpu1102I GCTNAGC 1 cut(s) 1702
Bpu14I TTCGAA 1 cut(s) 3483
BpuEI CTTGAG 3 cut(s) 45, 1782, 2809
Bsa29I ATCGAT 1 cut(s) 1143
BsaAI YACGTR 1 cut(s) 2776
BsaBI GATNNNNATC 1 cut(s) 2269
BsaHI GRCGYC 1 cut(s) 3267
BsaI GGTCTC 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 3452
BsaXI ACNNNNNCTCC 2 cut(s) 3588, 3618
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 304, 583, 2171, 2623
Bse1I ACTGG 7 cut(s) 740, 940, 1212, 1661, 2037, 3393, 3525
Bse3DI GCAATG 2 cut(s) 1416, 2861
Bse8I GATNNNNATC 1 cut(s) 2269
BseAI TCCGGA 1 cut(s) 3452
BseBI CCWGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
BseCI ATCGAT 1 cut(s) 1143
BseGI GGATG 6 cut(s) 269, 1586, 1773, 3449, 3584, 3802
BseJI GATNNNNATC 1 cut(s) 2269
BseLI CCNNNNNNNGG 5 cut(s) 201, 304, 583, 2171, 2623
BseMI GCAATG 2 cut(s) 1416, 2861
BseMII CTCAG 4 cut(s) 367, 374, 2976, 3474
BseNI ACTGG 7 cut(s) 740, 940, 1212, 1661, 2037, 3393, 3525
BseRI GAGGAG 1 cut(s) 1842
BseSI GKGCMC 3 cut(s) 195, 243, 1651
BseYI CCCAGC 4 cut(s) 452, 1336, 2750, 3868
BsgI GTGCAG 4 cut(s) 2277, 2925, 3491, 3918
Bsh1236I CGCG 3 cut(s) 1171, 1395, 2388
BshFI GGCC 7 cut(s) 221, 373, 1564, 2749, 2980, 3129, 3180
BshNI GGYRCC 2 cut(s) 238, 1648
BshVI ATCGAT 1 cut(s) 1143
BsiHKAI GWGCWC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
BsiHKCI CYCGRG 1 cut(s) 1712
BsiSI CCGG 1 cut(s) 3453
BslFI GGGAC 6 cut(s) 115, 406, 469, 1288, 1441, 3390
BslI CCNNNNNNNGG 5 cut(s) 201, 304, 583, 2171, 2623
BsmAI GTCTC 8 cut(s) 106, 169, 331, 1324, 1854, 2827, 2965, 3839
BsmBI CGTCTC 2 cut(s) 2965, 3839
BsmFI GGGAC 6 cut(s) 115, 406, 469, 1288, 1441, 3390
BsmI GAATGC 4 cut(s) 3035, 3133, 3356, 3926
BsnI GGCC 7 cut(s) 221, 373, 1564, 2749, 2980, 3129, 3180
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 1712
Bsp119I TTCGAA 1 cut(s) 3483
Bsp13I TCCGGA 1 cut(s) 3452
Bsp1407I TGTACA 1 cut(s) 1810
Bsp1720I GCTNAGC 1 cut(s) 1702
Bsp19I CCATGG 3 cut(s) 222, 928, 3181
BspACI CCGC 7 cut(s) 305, 1652, 2386, 2388, 2617, 3333, 3594
BspANI GGCC 7 cut(s) 221, 373, 1564, 2749, 2980, 3129, 3180
BspCNI CTCAG 4 cut(s) 366, 373, 2975, 3473
BspDI ATCGAT 1 cut(s) 1143
BspEI TCCGGA 1 cut(s) 3452
BspFNI CGCG 3 cut(s) 1171, 1395, 2388
BspHI TCATGA 1 cut(s) 1162
BspMAI CTGCAG 3 cut(s) 828, 1378, 1387
BspMI ACCTGC 1 cut(s) 2957
BspQI GCTCTTC 1 cut(s) 3177
BspT104I TTCGAA 1 cut(s) 3483
BspT107I GGYRCC 2 cut(s) 238, 1648
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 1416, 2861
BsrGI TGTACA 1 cut(s) 1810
BsrI ACTGG 7 cut(s) 740, 940, 1212, 1661, 2037, 3393, 3525
BssNAI GTATAC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 3267
BssSI CACGAG 1 cut(s) 1202
BssT1I CCWWGG 7 cut(s) 51, 222, 928, 1671, 2244, 3181, 3655
Bst1107I GTATAC 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 1202
Bst2UI CCWGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
Bst6I CTCTTC 4 cut(s) 2403, 3177, 3359, 3480
BstACI GRCGYC 1 cut(s) 3267
BstAPI GCANNNNNTGC 3 cut(s) 1382, 2276, 3581
BstAUI TGTACA 1 cut(s) 1810
BstBAI YACGTR 1 cut(s) 2776
BstBI TTCGAA 1 cut(s) 3483
BstDEI CTNAG 8 cut(s) 353, 360, 1489, 1702, 2524, 2962, 3101, 3460
BstDSI CCRYGG 5 cut(s) 222, 928, 2386, 2975, 3181
BstF5I GGATG 6 cut(s) 269, 1586, 1773, 3449, 3584, 3802
BstFNI CGCG 3 cut(s) 1171, 1395, 2388
BstHHI GCGC 2 cut(s) 1173, 1397
BstMAI GTCTC 8 cut(s) 106, 169, 331, 1324, 1854, 2827, 2965, 3839
BstNI CCWGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
BstPAI GACNNNNGTC 1 cut(s) 461
BstSCI CCNGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
BstSFI CTRYAG 6 cut(s) 824, 1374, 1383, 1479, 2892, 3903
BstSLI GKGCMC 3 cut(s) 195, 243, 1651
BstSNI TACGTA 1 cut(s) 2776
BstUI CGCG 3 cut(s) 1171, 1395, 2388
BstV2I GAAGAC 5 cut(s) 428, 2461, 2611, 3058, 3262
BstX2I RGATCY 6 cut(s) 356, 1932, 2174, 3632, 3651, 3659
BstXI CCANNNNNNTGG 3 cut(s) 160, 431, 935
BstYI RGATCY 6 cut(s) 356, 1932, 2174, 3632, 3651, 3659
BstZ17I GTATAC 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 1143
BsuI GTATCC 1 cut(s) 3363
BsuRI GGCC 7 cut(s) 221, 373, 1564, 2749, 2980, 3129, 3180
BsuTUI ATCGAT 1 cut(s) 1143
BtgI CCRYGG 5 cut(s) 222, 928, 2386, 2975, 3181
BtgZI GCGATG 1 cut(s) 1485
BtsCI GGATG 6 cut(s) 269, 1586, 1773, 3449, 3584, 3802
BtsI GCAGTG 5 cut(s) 260, 1821, 2808, 2855, 3114
BveI ACCTGC 1 cut(s) 2957
CaiI CAGNNNCTG 3 cut(s) 27, 676, 1382
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 2 cut(s) 1173, 1397
Cfr13I GGNCC 1 cut(s) 2748
Cfr42I CCGCGG 1 cut(s) 2389
ClaI ATCGAT 1 cut(s) 1143
CseI GACGC 2 cut(s) 1490, 3629
CspCI CAANNNNNGTGG 2 cut(s) 2797, 2832
DdeI CTNAG 8 cut(s) 353, 360, 1489, 1702, 2524, 2962, 3101, 3460
DraIII CACNNNGTG 1 cut(s) 2569
DriI GACNNNNNGTC 1 cut(s) 432
EaeI YGGCCR 2 cut(s) 1562, 3178
Eam1104I CTCTTC 4 cut(s) 2403, 3177, 3359, 3480
Eam1105I GACNNNNNGTC 1 cut(s) 432
EarI CTCTTC 4 cut(s) 2403, 3177, 3359, 3480
Ecl136II GAGCTC 6 cut(s) 117, 148, 328, 1711, 2147, 3170
Eco105I TACGTA 1 cut(s) 2776
Eco130I CCWWGG 7 cut(s) 51, 222, 928, 1671, 2244, 3181, 3655
Eco24I GRGCYC 7 cut(s) 119, 150, 330, 1713, 2149, 2637, 3172
Eco31I GGTCTC 1 cut(s) 169
Eco32I GATATC 2 cut(s) 409, 1761
Eco53kI GAGCTC 6 cut(s) 117, 148, 328, 1711, 2147, 3170
Eco57I CTGAAG 3 cut(s) 1890, 1896, 2820
Eco88I CYCGRG 1 cut(s) 1712
EcoICRI GAGCTC 6 cut(s) 117, 148, 328, 1711, 2147, 3170
EcoRII CCWGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
EcoRV GATATC 2 cut(s) 409, 1761
EcoT14I CCWWGG 7 cut(s) 51, 222, 928, 1671, 2244, 3181, 3655
EcoT22I ATGCAT 5 cut(s) 508, 1586, 2356, 2360, 3246
EcoT38I GRGCYC 7 cut(s) 119, 150, 330, 1713, 2149, 2637, 3172
ErhI CCWWGG 7 cut(s) 51, 222, 928, 1671, 2244, 3181, 3655
Esp3I CGTCTC 2 cut(s) 2965, 3839
FalI AAGNNNNNCTT 4 cut(s) 2446, 2478, 2818, 2850
FaqI GGGAC 6 cut(s) 115, 406, 469, 1288, 1441, 3390
FauI CCCGC 3 cut(s) 2393, 2624, 3326
FauNDI CATATG 1 cut(s) 950
FbaI TGATCA 2 cut(s) 1041, 3514
FblI GTMKAC 4 cut(s) 228, 289, 1245, 1482
FokI GGATG 6 cut(s) 256, 1593, 1760, 3436, 3571, 3809
FriOI GRGCYC 7 cut(s) 119, 150, 330, 1713, 2149, 2637, 3172
FspBI CTAG 6 cut(s) 444, 558, 807, 974, 1541, 1988
GlaI GCGC 2 cut(s) 1172, 1396
GsaI CCCAGC 4 cut(s) 456, 1340, 2754, 3872
GsuI CTGGAG 4 cut(s) 1306, 2253, 2397, 3508
HaeIII GGCC 7 cut(s) 221, 373, 1564, 2749, 2980, 3129, 3180
HapII CCGG 1 cut(s) 3453
HgaI GACGC 2 cut(s) 1490, 3629
HhaI GCGC 2 cut(s) 1173, 1397
Hin1I GRCGYC 1 cut(s) 3267
Hin6I GCGC 2 cut(s) 1171, 1395
HinP1I GCGC 2 cut(s) 1171, 1395
HincII GTYRAC 3 cut(s) 290, 690, 3616
HindII GTYRAC 3 cut(s) 290, 690, 3616
HindIII AAGCTT 3 cut(s) 1699, 3413, 3754
HpaII CCGG 1 cut(s) 3453
HphI GGTGA 3 cut(s) 1140, 2396, 3775
Hpy99I CGWCG 4 cut(s) 109, 294, 3645, 3648
HpyAV CCTTC 6 cut(s) 598, 1608, 1620, 1871, 2207, 2437
HpyCH4IV ACGT 4 cut(s) 871, 877, 2775, 3267
HpyF3I CTNAG 8 cut(s) 353, 360, 1489, 1702, 2524, 2962, 3101, 3460
HpySE526I ACGT 4 cut(s) 871, 877, 2775, 3267
Hsp92I GRCGYC 1 cut(s) 3267
HspAI GCGC 2 cut(s) 1171, 1395
Kpn2I TCCGGA 1 cut(s) 3452
Ksp22I TGATCA 2 cut(s) 1041, 3514
KspI CCGCGG 1 cut(s) 2389
LguI GCTCTTC 1 cut(s) 3177
MaeI CTAG 6 cut(s) 444, 558, 807, 974, 1541, 1988
MaeII ACGT 4 cut(s) 871, 877, 2775, 3267
MaeIII GTNAC 3 cut(s) 596, 802, 3679
MfeI CAATTG 2 cut(s) 2796, 2991
MflI RGATCY 6 cut(s) 356, 1932, 2174, 3632, 3651, 3659
MlsI TGGCCA 2 cut(s) 1564, 3180
MluNI TGGCCA 2 cut(s) 1564, 3180
MlyI GAGTC 4 cut(s) 845, 982, 2601, 3611
MmeI TCCRAC 7 cut(s) 898, 1784, 2152, 2202, 3008, 3626, 3768
Mox20I TGGCCA 2 cut(s) 1564, 3180
Mph1103I ATGCAT 5 cut(s) 508, 1586, 2356, 2360, 3246
MroI TCCGGA 1 cut(s) 3452
MroXI GAANNNNTTC 1 cut(s) 2196
MscI TGGCCA 2 cut(s) 1564, 3180
MseI TTAA 8 cut(s) 570, 662, 1005, 1575, 1637, 2000, 2585, 3339
MslI CAYNNNNRTG 7 cut(s) 1178, 1463, 2412, 3156, 3207, 3589, 3625
Msp20I TGGCCA 2 cut(s) 1564, 3180
MspA1I CMGCKG 6 cut(s) 763, 829, 2388, 2558, 2696, 3902
MspI CCGG 1 cut(s) 3453
MspR9I CCNGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
MunI CAATTG 2 cut(s) 2796, 2991
Mva1269I GAATGC 4 cut(s) 3035, 3133, 3356, 3926
MvaI CCWGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
MvnI CGCG 3 cut(s) 1171, 1395, 2388
NcoI CCATGG 3 cut(s) 222, 928, 3181
NdeI CATATG 1 cut(s) 950
NmeAIII GCCGAG 1 cut(s) 98
NsiI ATGCAT 5 cut(s) 508, 1586, 2356, 2360, 3246
NspV TTCGAA 1 cut(s) 3483
OliI CACNNNNGTG 2 cut(s) 3156, 3207
PaeI GCATGC 3 cut(s) 2358, 2989, 3775
PaeR7I CTCGAG 1 cut(s) 1712
PagI TCATGA 1 cut(s) 1162
PasI CCCWGGG 1 cut(s) 3227
PciSI GCTCTTC 1 cut(s) 3177
PctI GAATGC 4 cut(s) 3035, 3133, 3356, 3926
PdmI GAANNNNTTC 1 cut(s) 2196
PflMI CCANNNNNTGG 3 cut(s) 201, 583, 2171
PleI GAGTC 4 cut(s) 845, 982, 2601, 3611
PpsI GAGTC 4 cut(s) 845, 982, 2601, 3611
Ppu21I YACGTR 1 cut(s) 2776
PshAI GACNNNNGTC 1 cut(s) 461
PshBI ATTAAT 3 cut(s) 1005, 1637, 2000
PsiI TTATAA 1 cut(s) 749
Psp124BI GAGCTC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
Psp6I CCWGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
PspFI CCCAGC 4 cut(s) 452, 1336, 2750, 3868
PspGI CCWGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
PspPI GGNCC 1 cut(s) 2748
PstI CTGCAG 3 cut(s) 828, 1378, 1387
PstNI CAGNNNCTG 3 cut(s) 27, 676, 1382
PsuI RGATCY 6 cut(s) 356, 1932, 2174, 3632, 3651, 3659
PvuII CAGCTG 5 cut(s) 763, 829, 2558, 2696, 3902
RseI CAYNNNNRTG 7 cut(s) 1178, 1463, 2412, 3156, 3207, 3589, 3625
SacI GAGCTC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
SacII CCGCGG 1 cut(s) 2389
SalI GTCGAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 3177
SaqAI TTAA 8 cut(s) 570, 662, 1005, 1575, 1637, 2000, 2585, 3339
Sau96I GGNCC 1 cut(s) 2748
SchI GAGTC 4 cut(s) 845, 982, 2601, 3611
ScrFI CCNGG 6 cut(s) 274, 1566, 2335, 2707, 2870, 3228
SfcI CTRYAG 6 cut(s) 824, 1374, 1383, 1479, 2892, 3903
Sfr274I CTCGAG 1 cut(s) 1712
Sfr303I CCGCGG 1 cut(s) 2389
SfuI TTCGAA 1 cut(s) 3483
SgrBI CCGCGG 1 cut(s) 2389
SlaI CTCGAG 1 cut(s) 1712
SmiMI CAYNNNNRTG 7 cut(s) 1178, 1463, 2412, 3156, 3207, 3589, 3625
SmlI CTYRAG 4 cut(s) 60, 1712, 1797, 2824
SmoI CTYRAG 4 cut(s) 60, 1712, 1797, 2824
SnaBI TACGTA 1 cut(s) 2776
SpeI ACTAGT 2 cut(s) 443, 806
SphI GCATGC 3 cut(s) 2358, 2989, 3775
SsiI CCGC 7 cut(s) 305, 1652, 2386, 2388, 2617, 3333, 3594
SspMI CTAG 6 cut(s) 444, 558, 807, 974, 1541, 1988
SstI GAGCTC 6 cut(s) 119, 150, 330, 1713, 2149, 3172
StyD4I CCNGG 6 cut(s) 272, 1564, 2333, 2705, 2868, 3226
StyI CCWWGG 7 cut(s) 51, 222, 928, 1671, 2244, 3181, 3655
TaiI ACGT 4 cut(s) 874, 880, 2778, 3270
TaqI TCGA 9 cut(s) 107, 213, 289, 1054, 1143, 1713, 2149, 3483, 3918
TatI WGTACW 3 cut(s) 705, 1810, 3685
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 8 cut(s) 570, 662, 1005, 1575, 1637, 2000, 2585, 3339
Tru9I TTAA 8 cut(s) 570, 662, 1005, 1575, 1637, 2000, 2585, 3339
TspGWI ACGGA 2 cut(s) 2947, 3863
Van91I CCANNNNNTGG 3 cut(s) 201, 583, 2171
VspI ATTAAT 3 cut(s) 1005, 1637, 2000
XapI RAATTY 2 cut(s) 2764, 3671
XbaI TCTAGA 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 3549
XhoI CTCGAG 1 cut(s) 1712
XmiI GTMKAC 4 cut(s) 228, 289, 1245, 1482
XmnI GAANNNNTTC 1 cut(s) 2196
XspI CTAG 6 cut(s) 444, 558, 807, 974, 1541, 1988
ZraI GACGTC 1 cut(s) 3268
Zsp2I ATGCAT 5 cut(s) 508, 1586, 2356, 2360, 3246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.