Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001879.1

Orthogroup ID

OG0004618

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4056

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

gagaggaatcctatcgattcacctgtgcctcatcatgattcgcgcattagcatgttgctgtctatcactacactcgtggttgccagtcttattgatgaagatgaaagtgcaaaagtagacaagacagactgtagtcttgccaatcaacaggagaaacaaaagggtatggggaagtcccaccacgatttagtctccagcttacaaatgctgggaaactttataggactgctgtctccccctcgttctgcagtttctgcagcaaatcgcgctgctgcaaaagcaatgttctttatttcagggactagtgttgaaagtgcgtacttggattgcatcagtatggatgatgtatctgtagactactcaggaaacatgcgtcatctgattgttgaggcttgtatagcaagaaacctactagacacatcagcatatttctggccaggctatgttaaaggatgcatcaatgaattaccttctaatgtaccctcccaagtgccttgttggtcgtcattaatgcagggggcaccgcttacaccagtaatgaccaaggcattgatttcaactcctgcatcaaggtacaaacttattcctcatggcttaacagagctcgagaagatatttgagatagccgtcagtggatcagattatgaaaagatatcagcagctaccatcctttgtggagcctccctcactcaaggttggaatgtacaggaacacactgctcattttattattagattgttgtctcctccatcttctacaaatcattctgaaagtggcagccatctgataggtcatgcttcagtgctaaatgcacttctttctgggatctctaccattgatagtatcaagattttctcgctacttggcatggttcctcaactagcatgttcattaatggcaatctgtgagatttttgggtcatgtgtactcagtagctcaggcagtcagacaacagaaaatgagacttctactcatactgtgttttctaatggatttactctttttctaaaactgtggaggtttgatcgttgctttggagctcgaccagcagatataccaacagttggatccaaccttactcctgaataccttctactaatacgaaactcccaccttacttcgtctggagatgctcctgaggattgtaataaaaggagattatcatcagttgcaagctcatcatctgcacaccccatctacattgattcatttccaaaattgaaagcctggtacaatcagcacaacgcatgcatatcttcaaccctctctggagttgcccgcggaactcctgttcctcaccatgttgatgagattttcaactttatattcaaagagaaggagcaaggaagacagtctttagattctaataattctggaagttgcagttcatttagagaagcagatgtatctatttacttaggtaaactgcctgcttgggagattctggcagctcttcactatgtggttgatgctgctttaattgcctgtgccaatggaaaactctctccccgcaatttggctatggggctcaaagtcttggttgattttcttcctgcatctttgggaaccattgtgagctacttgacagctgaagtaaccaggggtacttggaaaccagtttcgatgaatggaacagattggccctgccctgatgcaaatttgtcatacgtcgaggaaaagataaagacaattgtagctgccactgctgttgacgtctcaagggcttcttcaggaagctgtcaagctacactgccattgcccctggctgccttattgtgcctgactatagcatataaaactgatagagattcaatacggtatctggatttgcctgcacaggtattggcctccgtctcagcaggttgcccctggccttgcatgccaattgtgtattcactgtggagccagaaagcaaagcgttggagtgcattctttgtgttttcttcatctcgtactgtcttcctccaaaaccaacaggcttttgtccagcttcttagaagctgcttcactgccatacttggcctgcattccaatcctctctcacacaatggtggtattggagctcttcttggccatgggatcgtatctcatgctcacgacagtgtttctcctgtttcccctgggattctttacatgcatgtttatccacatttatctgacgtcttcttcttgaacaaagagattgtttccctcttgatagaatgtgtaggagagataacaagaagcgggtttaatgtggaggaatgcaagaaaatgaagaggatacagggacagtttcaactggcttcaaacctgacacggggtaagcttgtggcttcccttgcagcatctttagtatggtcatccggaggcttaggtctggtgcagtcattgttcgaagagtttttaccatcgtggtttgtatctgatcacagctccagtcaaggagaatcaccacaagttgcatggctaaaaggatatgtggttgcatattttgcatccttgtgcggagctttcgtttggggtgttgactcatcatcatggggatccaagcgtcgtcggaagatccttggatcccacatggaatttattgtaactgtactaaaagggcagataatacttcgttgtgatgagatcacttggcgagcttatgtgttgggattcataagcttgatggtgatttgcatgccaactttggtgttggaggtggatgtgcatgtcttgaagataatcagtaagaagctgaatgagtggaatgagacggagcttgctatggaattgctggggattggtggtcttgatttcatgggtgcagctgtagaaatgataatcgaatgccagccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

941

Amino Acids

102.28

Weight (kDa)

6.42

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23590
fragaria_vesca	FvH4_4g14380 FvH4_4g14390
malus_domestica	MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1
prunus_persica	Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1
pyrus_communis	pycom13g15720 pycom16g15330
rosa_chinensis	RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541
rosa_laevigata	RLG00000007855 RLG00000007856
rosa_multiflora	Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361790 Rroxscaffold_5G00361800
rosa_rugosa	Rorug04G0154000 Rorug04G0154100.1
rosa_samantha	Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000
rosa_wichuraiana	Rw4G018240 Rw4G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1716, 2163
Acc36I	ACCTGC	1 cut(s)	1850
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccI	GTMKAC	2 cut(s)	117, 354
AccII	CGCG	3 cut(s)	43, 267, 1281
AccIII	TCCGGA	1 cut(s)	2345
AciI	CCGC	6 cut(s)	524, 1279, 1281, 1510, 2226, 2487
AcoI	YGGCCR	2 cut(s)	434, 2071
AcsI	RAATTY	2 cut(s)	1657, 2564
AcuI	CTGAAG	3 cut(s)	783, 1611, 1713
AcyI	GRCGYC	2 cut(s)	1713, 2160
AdeI	CACNNNGTG	1 cut(s)	1462
AfaI	GTAC	9 cut(s)	320, 480, 575, 705, 927, 1232, 1606, 1954, 2580
AfiI	CCNNNNNNNGG	3 cut(s)	1064, 1516, 2299
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
AjuI	GAANNNNNNNTTGG	2 cut(s)	1876, 1908
AleI	CACNNNNGTG	2 cut(s)	2049, 2100
AloI	GAACNNNNNNTCC	4 cut(s)	1275, 1276, 1307, 1308
Alw21I	GWGCWC	3 cut(s)	606, 1042, 2065
Alw26I	GTCTC	7 cut(s)	196, 237, 747, 956, 1720, 1858, 2732
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	2345
AoxI	GGCC	6 cut(s)	434, 1640, 1845, 1871, 2020, 2071
ApoI	RAATTY	2 cut(s)	1657, 2564
AseI	ATTAAT	2 cut(s)	509, 893
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspLEI	GCGC	2 cut(s)	45, 269
AspS9I	GGNCC	1 cut(s)	1641
AsuHPI	GGTGA	4 cut(s)	12, 1289, 2424, 2668
AsuII	TTCGAA	1 cut(s)	2376
AvaI	CYCGRG	1 cut(s)	605
AxyI	CCTNAGG	1 cut(s)	1137
BaeGI	GKGCMC	1 cut(s)	523
BalI	TGGCCA	2 cut(s)	436, 2073
BamHI	GGATCC	3 cut(s)	1067, 2525, 2552
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	4 cut(s)	606, 1042, 1530, 2065
BarI	GAAGNNNNNNTAC	2 cut(s)	2370, 2402
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	3 cut(s)	1354, 1951, 2155
Bbv12I	GWGCWC	3 cut(s)	606, 1042, 2065
BccI	CCATC	6 cut(s)	674, 757, 789, 1202, 2398, 2647
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
BciVI	GTATCC	1 cut(s)	2256
BclI	TGATCA	1 cut(s)	2407
BcoDI	GTCTC	7 cut(s)	196, 237, 747, 956, 1720, 1858, 2732
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	3 cut(s)	303, 413, 881
BfmI	CTRYAG	6 cut(s)	130, 246, 255, 351, 1785, 2796
BfuAI	ACCTGC	1 cut(s)	1850
BfuI	GTATCC	1 cut(s)	2256
Bme1390I	CCNGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	1641
BmiI	GGNNCC	8 cut(s)	522, 679, 873, 1069, 1567, 1904, 2527, 2554
BmrFI	CCNGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
BoxI	GACNNNNGTC	2 cut(s)	132, 229
BpiI	GAAGAC	3 cut(s)	1354, 1951, 2155
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	4 cut(s)	178, 1146, 1290, 2401
Bpu10I	CCTNAGC	2 cut(s)	937, 2353
Bpu14I	TTCGAA	1 cut(s)	2376
BpuEI	CTTGAG	2 cut(s)	675, 1702
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	1162
BsaHI	GRCGYC	2 cut(s)	1713, 2160
BsaJI	CCNNGG	9 cut(s)	543, 1279, 1599, 1761, 1868, 2074, 2119, 2120, 2548
BsaWI	WCCGGW	1 cut(s)	2345
BsaXI	ACNNNNNCTCC	2 cut(s)	2481, 2511
Bsc4I	CCNNNNNNNGG	3 cut(s)	1064, 1516, 2299
Bse1I	ACTGG	5 cut(s)	84, 533, 1616, 2286, 2418
Bse21I	CCTNAGG	1 cut(s)	1137
Bse3DI	GCAATG	2 cut(s)	288, 1754
Bse8I	GATNNNNATC	1 cut(s)	1162
BseAI	TCCGGA	1 cut(s)	2345
BseBI	CCWGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	9 cut(s)	543, 1279, 1599, 1761, 1868, 2074, 2119, 2120, 2548
BseGI	GGATG	6 cut(s)	346, 458, 666, 2342, 2477, 2695
BseJI	GATNNNNATC	1 cut(s)	1162
BseLI	CCNNNNNNNGG	3 cut(s)	1064, 1516, 2299
BseMI	GCAATG	2 cut(s)	288, 1754
BseMII	CTCAG	5 cut(s)	375, 943, 951, 1128, 1869
BseNI	ACTGG	5 cut(s)	84, 533, 1616, 2286, 2418
BseRI	GAGGAG	1 cut(s)	735
BseSI	GKGCMC	1 cut(s)	523
BseYI	CCCAGC	2 cut(s)	208, 2761
BsgI	GTGCAG	4 cut(s)	1170, 1818, 2384, 2811
Bsh1236I	CGCG	3 cut(s)	43, 267, 1281
BshFI	GGCC	6 cut(s)	436, 1642, 1847, 1873, 2022, 2073
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	606, 1042, 2065
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	2346
BslFI	GGGAC	3 cut(s)	160, 313, 2283
BslI	CCNNNNNNNGG	3 cut(s)	1064, 1516, 2299
BsmAI	GTCTC	7 cut(s)	196, 237, 747, 956, 1720, 1858, 2732
BsmBI	CGTCTC	3 cut(s)	1720, 1858, 2732
BsmFI	GGGAC	3 cut(s)	160, 313, 2283
BsmI	GAATGC	4 cut(s)	1928, 2026, 2249, 2819
BsnI	GGCC	6 cut(s)	436, 1642, 1847, 1873, 2022, 2073
BsoBI	CYCGRG	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	2376
Bsp1286I	GDGCHC	5 cut(s)	523, 606, 1042, 1530, 2065
Bsp13I	TCCGGA	1 cut(s)	2345
Bsp1407I	TGTACA	1 cut(s)	703
Bsp19I	CCATGG	1 cut(s)	2074
BspACI	CCGC	6 cut(s)	524, 1279, 1281, 1510, 2226, 2487
BspANI	GGCC	6 cut(s)	436, 1642, 1847, 1873, 2022, 2073
BspCNI	CTCAG	5 cut(s)	374, 942, 950, 1129, 1868
BspDI	ATCGAT	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	2345
BspFNI	CGCG	3 cut(s)	43, 267, 1281
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	8 cut(s)	522, 679, 873, 1069, 1567, 1904, 2527, 2554
BspMAI	CTGCAG	2 cut(s)	250, 259
BspMI	ACCTGC	1 cut(s)	1850
BspQI	GCTCTTC	2 cut(s)	1458, 2070
BspT104I	TTCGAA	1 cut(s)	2376
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	288, 1754
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	5 cut(s)	84, 533, 1616, 2286, 2418
BssECI	CCNNGG	9 cut(s)	543, 1279, 1599, 1761, 1868, 2074, 2119, 2120, 2548
BssNI	GRCGYC	2 cut(s)	1713, 2160
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	543, 2074, 2548
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
Bst6I	CTCTTC	4 cut(s)	1458, 2070, 2252, 2373
BstACI	GRCGYC	2 cut(s)	1713, 2160
BstAPI	GCANNNNNTGC	2 cut(s)	254, 2474
BstAUI	TGTACA	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	2376
BstDEI	CTNAG	8 cut(s)	361, 929, 937, 1137, 1417, 1855, 1994, 2353
BstDSI	CCRYGG	2 cut(s)	1279, 2074
BstF5I	GGATG	6 cut(s)	346, 458, 666, 2342, 2477, 2695
BstFNI	CGCG	3 cut(s)	43, 267, 1281
BstHHI	GCGC	2 cut(s)	45, 269
BstMAI	GTCTC	7 cut(s)	196, 237, 747, 956, 1720, 1858, 2732
BstNI	CCWGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
BstNSI	RCATGY	9 cut(s)	55, 373, 888, 1251, 1882, 2137, 2141, 2668, 2699
BstPAI	GACNNNNGTC	2 cut(s)	132, 229
BstSCI	CCNGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
BstSFI	CTRYAG	6 cut(s)	130, 246, 255, 351, 1785, 2796
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	3 cut(s)	43, 267, 1281
BstV2I	GAAGAC	3 cut(s)	1354, 1951, 2155
BstX2I	RGATCY	5 cut(s)	825, 1067, 2525, 2544, 2552
BstYI	RGATCY	5 cut(s)	825, 1067, 2525, 2544, 2552
Bsu15I	ATCGAT	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	1137
BsuI	GTATCC	1 cut(s)	2256
BsuRI	GGCC	6 cut(s)	436, 1642, 1847, 1873, 2022, 2073
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	1279, 2074
BtsCI	GGATG	6 cut(s)	346, 458, 666, 2342, 2477, 2695
BtsI	GCAGTG	4 cut(s)	714, 1701, 1748, 2007
BtsIMutI	CAGTG	8 cut(s)	637, 714, 807, 1701, 1748, 1895, 2007, 2107
BveI	ACCTGC	1 cut(s)	1850
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	2 cut(s)	45, 269
Cfr13I	GGNCC	1 cut(s)	1641
Cfr42I	CCGCGG	1 cut(s)	1282
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	362, 2522
Csp6I	GTAC	9 cut(s)	319, 479, 574, 704, 926, 1231, 1605, 1953, 2579
CspCI	CAANNNNNGTGG	2 cut(s)	1690, 1725
CviQI	GTAC	9 cut(s)	319, 479, 574, 704, 926, 1231, 1605, 1953, 2579
DdeI	CTNAG	8 cut(s)	361, 929, 937, 1137, 1417, 1855, 1994, 2353
DraIII	CACNNNGTG	1 cut(s)	1462
EaeI	YGGCCR	2 cut(s)	434, 2071
Eam1104I	CTCTTC	4 cut(s)	1458, 2070, 2252, 2373
EarI	CTCTTC	4 cut(s)	1458, 2070, 2252, 2373
Ecl136II	GAGCTC	3 cut(s)	604, 1040, 2063
Eco130I	CCWWGG	3 cut(s)	543, 2074, 2548
Eco24I	GRGCYC	4 cut(s)	606, 1042, 1530, 2065
Eco32I	GATATC	1 cut(s)	654
Eco53kI	GAGCTC	3 cut(s)	604, 1040, 2063
Eco57I	CTGAAG	3 cut(s)	783, 1611, 1713
Eco81I	CCTNAGG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	3 cut(s)	604, 1040, 2063
EcoRII	CCWGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	3 cut(s)	543, 2074, 2548
EcoT22I	ATGCAT	3 cut(s)	458, 1253, 2139
EcoT38I	GRGCYC	4 cut(s)	606, 1042, 1530, 2065
ErhI	CCWWGG	3 cut(s)	543, 2074, 2548
Esp3I	CGTCTC	3 cut(s)	1720, 1858, 2732
FalI	AAGNNNNNCTT	4 cut(s)	1339, 1371, 1711, 1743
FaqI	GGGAC	3 cut(s)	160, 313, 2283
FauI	CCCGC	3 cut(s)	1286, 1517, 2219
FbaI	TGATCA	1 cut(s)	2407
FblI	GTMKAC	2 cut(s)	117, 354
FokI	GGATG	6 cut(s)	353, 465, 653, 2329, 2464, 2702
FriOI	GRGCYC	4 cut(s)	606, 1042, 1530, 2065
FspBI	CTAG	3 cut(s)	303, 413, 881
GlaI	GCGC	2 cut(s)	44, 268
GsaI	CCCAGC	2 cut(s)	212, 2765
GsuI	CTGGAG	4 cut(s)	178, 1146, 1290, 2401
HaeIII	GGCC	6 cut(s)	436, 1642, 1847, 1873, 2022, 2073
HapII	CCGG	1 cut(s)	2346
HgaI	GACGC	2 cut(s)	362, 2522
HhaI	GCGC	2 cut(s)	45, 269
Hin1I	GRCGYC	2 cut(s)	1713, 2160
Hin6I	GCGC	2 cut(s)	43, 267
HinP1I	GCGC	2 cut(s)	43, 267
HincII	GTYRAC	2 cut(s)	1711, 2509
HindII	GTYRAC	2 cut(s)	1711, 2509
HindIII	AAGCTT	2 cut(s)	2306, 2647
HpaII	CCGG	1 cut(s)	2346
HphI	GGTGA	4 cut(s)	12, 1289, 2424, 2668
Hpy166II	GTNNAC	6 cut(s)	118, 355, 926, 1424, 1711, 2509
Hpy188I	TCNGA	8 cut(s)	381, 640, 769, 786, 948, 2158, 2407, 2541
Hpy8I	GTNNAC	6 cut(s)	118, 355, 926, 1424, 1711, 2509
Hpy99I	CGWCG	3 cut(s)	1673, 2538, 2541
HpyAV	CCTTC	3 cut(s)	480, 1100, 1330
HpyCH4IV	ACGT	3 cut(s)	1668, 1713, 2160
HpyF3I	CTNAG	8 cut(s)	361, 929, 937, 1137, 1417, 1855, 1994, 2353
HpySE526I	ACGT	3 cut(s)	1668, 1713, 2160
Hsp92I	GRCGYC	2 cut(s)	1713, 2160
HspAI	GCGC	2 cut(s)	43, 267
Kpn2I	TCCGGA	1 cut(s)	2345
Ksp22I	TGATCA	1 cut(s)	2407
KspI	CCGCGG	1 cut(s)	1282
LguI	GCTCTTC	2 cut(s)	1458, 2070
LmnI	GCTCC	9 cut(s)	677, 1037, 1138, 1339, 1902, 2060, 2420, 2489, 2743
MaeI	CTAG	3 cut(s)	303, 413, 881
MaeII	ACGT	3 cut(s)	1668, 1713, 2160
MaeIII	GTNAC	2 cut(s)	1594, 2572
MfeI	CAATTG	2 cut(s)	1689, 1884
MflI	RGATCY	5 cut(s)	825, 1067, 2525, 2544, 2552
MhlI	GDGCHC	5 cut(s)	523, 606, 1042, 1530, 2065
MlsI	TGGCCA	2 cut(s)	436, 2073
MluNI	TGGCCA	2 cut(s)	436, 2073
MlyI	GAGTC	1 cut(s)	2504
MmeI	TCCRAC	6 cut(s)	677, 1045, 1095, 1901, 2519, 2661
Mox20I	TGGCCA	2 cut(s)	436, 2073
Mph1103I	ATGCAT	3 cut(s)	458, 1253, 2139
MroI	TCCGGA	1 cut(s)	2345
MroXI	GAANNNNTTC	1 cut(s)	1089
MscI	TGGCCA	2 cut(s)	436, 2073
MseI	TTAA	6 cut(s)	447, 509, 596, 893, 1478, 2232
MslI	CAYNNNNRTG	7 cut(s)	50, 335, 1305, 2049, 2100, 2482, 2518
Msp20I	TGGCCA	2 cut(s)	436, 2073
MspA1I	CMGCKG	3 cut(s)	1281, 1589, 2795
MspI	CCGG	1 cut(s)	2346
MspR9I	CCNGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
MunI	CAATTG	2 cut(s)	1689, 1884
Mva1269I	GAATGC	4 cut(s)	1928, 2026, 2249, 2819
MvaI	CCWGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
MvnI	CGCG	3 cut(s)	43, 267, 1281
NcoI	CCATGG	1 cut(s)	2074
NlaIV	GGNNCC	8 cut(s)	522, 679, 873, 1069, 1567, 1904, 2527, 2554
NsiI	ATGCAT	3 cut(s)	458, 1253, 2139
NspI	RCATGY	9 cut(s)	55, 373, 888, 1251, 1882, 2137, 2141, 2668, 2699
NspV	TTCGAA	1 cut(s)	2376
OliI	CACNNNNGTG	2 cut(s)	2049, 2100
PaeI	GCATGC	3 cut(s)	1251, 1882, 2668
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	34
PasI	CCCWGGG	1 cut(s)	2120
PciSI	GCTCTTC	2 cut(s)	1458, 2070
PctI	GAATGC	4 cut(s)	1928, 2026, 2249, 2819
PdmI	GAANNNNTTC	1 cut(s)	1089
PflMI	CCANNNNNTGG	1 cut(s)	1064
PleI	GAGTC	1 cut(s)	2504
PpsI	GAGTC	1 cut(s)	2504
PshAI	GACNNNNGTC	2 cut(s)	132, 229
PshBI	ATTAAT	2 cut(s)	509, 893
Psp124BI	GAGCTC	3 cut(s)	606, 1042, 2065
Psp6I	CCWGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
PspFI	CCCAGC	2 cut(s)	208, 2761
PspGI	CCWGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
PspN4I	GGNNCC	8 cut(s)	522, 679, 873, 1069, 1567, 1904, 2527, 2554
PspPI	GGNCC	1 cut(s)	1641
PstI	CTGCAG	2 cut(s)	250, 259
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	5 cut(s)	825, 1067, 2525, 2544, 2552
PvuII	CAGCTG	2 cut(s)	1589, 2795
RsaI	GTAC	9 cut(s)	320, 480, 575, 705, 927, 1232, 1606, 1954, 2580
RsaNI	GTAC	9 cut(s)	319, 479, 574, 704, 926, 1231, 1605, 1953, 2579
RseI	CAYNNNNRTG	7 cut(s)	50, 335, 1305, 2049, 2100, 2482, 2518
SacI	GAGCTC	3 cut(s)	606, 1042, 2065
SacII	CCGCGG	1 cut(s)	1282
SapI	GCTCTTC	2 cut(s)	1458, 2070
SaqAI	TTAA	6 cut(s)	447, 509, 596, 893, 1478, 2232
Sau96I	GGNCC	1 cut(s)	1641
SchI	GAGTC	1 cut(s)	2504
ScrFI	CCNGG	6 cut(s)	438, 1228, 1600, 1763, 1870, 2121
SduI	GDGCHC	5 cut(s)	523, 606, 1042, 1530, 2065
SfcI	CTRYAG	6 cut(s)	130, 246, 255, 351, 1785, 2796
Sfr274I	CTCGAG	1 cut(s)	605
Sfr303I	CCGCGG	1 cut(s)	1282
SfuI	TTCGAA	1 cut(s)	2376
SgrBI	CCGCGG	1 cut(s)	1282
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	7 cut(s)	50, 335, 1305, 2049, 2100, 2482, 2518
SmlI	CTYRAG	3 cut(s)	605, 690, 1717
SmoI	CTYRAG	3 cut(s)	605, 690, 1717
SpeI	ACTAGT	1 cut(s)	302
SphI	GCATGC	3 cut(s)	1251, 1882, 2668
SsiI	CCGC	6 cut(s)	524, 1279, 1281, 1510, 2226, 2487
SspMI	CTAG	3 cut(s)	303, 413, 881
SstI	GAGCTC	3 cut(s)	606, 1042, 2065
StyD4I	CCNGG	6 cut(s)	436, 1226, 1598, 1761, 1868, 2119
StyI	CCWWGG	3 cut(s)	543, 2074, 2548
TaiI	ACGT	3 cut(s)	1671, 1716, 2163
TaqI	TCGA	7 cut(s)	15, 606, 1042, 1622, 1671, 2376, 2811
TatI	WGTACW	3 cut(s)	703, 925, 2578
Tru1I	TTAA	6 cut(s)	447, 509, 596, 893, 1478, 2232
Tru9I	TTAA	6 cut(s)	447, 509, 596, 893, 1478, 2232
TscAI	CASTG	8 cut(s)	637, 721, 807, 1708, 1755, 1902, 2014, 2107
TspGWI	ACGGA	2 cut(s)	1840, 2756
TspRI	CASTG	8 cut(s)	637, 721, 807, 1708, 1755, 1902, 2014, 2107
Van91I	CCANNNNNTGG	1 cut(s)	1064
VspI	ATTAAT	2 cut(s)	509, 893
XapI	RAATTY	2 cut(s)	1657, 2564
XceI	RCATGY	9 cut(s)	55, 373, 888, 1251, 1882, 2137, 2141, 2668, 2699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2442
XhoI	CTCGAG	1 cut(s)	605
XmiI	GTMKAC	2 cut(s)	117, 354
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	3 cut(s)	303, 413, 881
ZraI	GACGTC	2 cut(s)	1714, 2161
Zsp2I	ATGCAT	3 cut(s)	458, 1253, 2139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.