Mediator of RNA polymerase II transcription subunit 33A-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23590 |
| fragaria_vesca | FvH4_4g14380 FvH4_4g14390 |
| malus_domestica | MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1 |
| prunus_persica | Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1 |
| pyrus_communis | pycom13g15720 pycom16g15330 |
| rosa_chinensis | RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541 |
| rosa_laevigata | RLG00000007855 RLG00000007856 |
| rosa_multiflora | Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00361790 Rroxscaffold_5G00361800 |
| rosa_rugosa | Rorug04G0154000 Rorug04G0154100.1 |
| rosa_samantha | Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000 |
| rosa_wichuraiana | Rw4G018240 Rw4G018250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 833 |
| AarI | CACCTGC | 1 cut(s) | 2729 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2945 |
| AatII | GACGTC | 1 cut(s) | 3571 |
| Acc36I | ACCTGC | 2 cut(s) | 2446, 2729 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 201, 304, 2931 |
| AccBSI | CCGCTC | 1 cut(s) | 3824 |
| AccI | GTMKAC | 4 cut(s) | 289, 1552, 1839, 3726 |
| AccII | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| AccIII | TCCGGA | 1 cut(s) | 2129 |
| AciI | CCGC | 8 cut(s) | 541, 1186, 1321, 1382, 2595, 3509, 3824, 3828 |
| AclWI | GGATC | 4 cut(s) | 71, 1426, 2154, 3806 |
| AcoI | YGGCCR | 3 cut(s) | 660, 1577, 3825 |
| AcsI | RAATTY | 3 cut(s) | 427, 708, 802 |
| AcuI | CTGAAG | 2 cut(s) | 828, 2619 |
| AcyI | GRCGYC | 1 cut(s) | 3568 |
| AdeI | CACNNNGTG | 1 cut(s) | 1355 |
| AfaI | GTAC | 7 cut(s) | 538, 741, 1137, 2061, 2093, 3155, 3814 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 201, 304, 1160, 1161, 1631, 2839, 2854, 2931, 3795 |
| AflII | CTTAAG | 2 cut(s) | 332, 2537 |
| AflIII | ACRYGT | 3 cut(s) | 156, 3148, 3729 |
| AjiI | CACGTC | 2 cut(s) | 1489, 3730 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 277, 309, 2374, 2406 |
| Alw21I | GWGCWC | 8 cut(s) | 150, 2140, 2500, 3076, 3241, 3516, 3613, 3714 |
| Alw26I | GTCTC | 9 cut(s) | 29, 331, 1339, 1942, 2155, 2419, 2910, 3327, 3733 |
| Alw44I | GTGCAC | 1 cut(s) | 3609 |
| AlwI | GGATC | 4 cut(s) | 71, 1426, 2154, 3806 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 27, 1351, 2198 |
| Ama87I | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| Aor13HI | TCCGGA | 1 cut(s) | 2129 |
| ApaLI | GTGCAC | 1 cut(s) | 3609 |
| ApoI | RAATTY | 3 cut(s) | 427, 708, 802 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 408, 525, 2460, 2509 |
| AspLEI | GCGC | 1 cut(s) | 3496 |
| AspS9I | GGNCC | 6 cut(s) | 371, 1163, 1873, 2399, 2649, 2846 |
| AsuHPI | GGTGA | 3 cut(s) | 1367, 2132, 3340 |
| AsuII | TTCGAA | 1 cut(s) | 806 |
| AvaI | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| AvaII | GGWCC | 2 cut(s) | 1873, 2399 |
| BaeGI | GKGCMC | 4 cut(s) | 61, 195, 243, 3613 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2075, 2108, 3137, 3170 |
| BalI | TGGCCA | 2 cut(s) | 662, 1579 |
| BanII | GRGCYC | 1 cut(s) | 150 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 868, 900, 2377, 2409 |
| BauI | CACGAG | 1 cut(s) | 2517 |
| BbsI | GAAGAC | 3 cut(s) | 2418, 3169, 3275 |
| Bbv12I | GWGCWC | 8 cut(s) | 150, 2140, 2500, 3076, 3241, 3516, 3613, 3714 |
| BccI | CCATC | 9 cut(s) | 203, 842, 904, 1001, 2306, 2307, 2925, 3305, 3611 |
| BceAI | ACGGC | 1 cut(s) | 2505 |
| BciVI | GTATCC | 1 cut(s) | 1161 |
| BclI | TGATCA | 1 cut(s) | 3399 |
| BcoDI | GTCTC | 9 cut(s) | 29, 331, 1339, 1942, 2155, 2419, 2910, 3327, 3733 |
| BfaI | CTAG | 7 cut(s) | 954, 1310, 1545, 2120, 2702, 2727, 2774 |
| BfmI | CTRYAG | 5 cut(s) | 819, 1343, 1836, 2529, 2736 |
| BfrI | CTTAAG | 2 cut(s) | 332, 2537 |
| BfuAI | ACCTGC | 2 cut(s) | 2446, 2729 |
| BfuI | GTATCC | 1 cut(s) | 1161 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1409 |
| BglII | AGATCT | 1 cut(s) | 920 |
| Bme18I | GGWCC | 2 cut(s) | 1873, 2399 |
| BmeT110I | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| BmgBI | CACGTC | 2 cut(s) | 1489, 3730 |
| BmgT120I | GGNCC | 6 cut(s) | 371, 1163, 1873, 2399, 2649, 2846 |
| BmiI | GGNNCC | 8 cut(s) | 1755, 1875, 2290, 2400, 2848, 3097, 3442, 3474 |
| BmrI | ACTGGG | 2 cut(s) | 1361, 2646 |
| BmuI | ACTGGG | 2 cut(s) | 1361, 2646 |
| BpiI | GAAGAC | 3 cut(s) | 2418, 3169, 3275 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 9, 41 |
| BpmI | CTGGAG | 6 cut(s) | 233, 1321, 1659, 2175, 2736, 2960 |
| Bpu14I | TTCGAA | 1 cut(s) | 806 |
| BpuEI | CTTGAG | 3 cut(s) | 558, 1614, 2060 |
| Bsa29I | ATCGAT | 1 cut(s) | 398 |
| BsaAI | YACGTR | 1 cut(s) | 3149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1011 |
| BsaHI | GRCGYC | 1 cut(s) | 3568 |
| BsaI | GGTCTC | 1 cut(s) | 2419 |
| BsaWI | WCCGGW | 2 cut(s) | 1750, 2129 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 201, 304, 1160, 1161, 1631, 2839, 2854, 2931, 3795 |
| Bse118I | RCCGGY | 2 cut(s) | 301, 736 |
| Bse3DI | GCAATG | 3 cut(s) | 1330, 1686, 3324 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1011 |
| BseAI | TCCGGA | 1 cut(s) | 2129 |
| BseCI | ATCGAT | 1 cut(s) | 398 |
| BseGI | GGATG | 5 cut(s) | 1012, 1780, 2029, 2072, 3727 |
| BseJI | GATNNNNATC | 1 cut(s) | 1011 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 201, 304, 1160, 1161, 1631, 2839, 2854, 2931, 3795 |
| BseMI | GCAATG | 3 cut(s) | 1330, 1686, 3324 |
| BseMII | CTCAG | 6 cut(s) | 374, 2079, 2414, 2848, 3746, 3757 |
| BseRI | GAGGAG | 7 cut(s) | 631, 1253, 1256, 2025, 2173, 2505, 3535 |
| BseSI | GKGCMC | 4 cut(s) | 61, 195, 243, 3613 |
| BseX3I | CGGCCG | 1 cut(s) | 3825 |
| BseYI | CCCAGC | 4 cut(s) | 177, 297, 1451, 3793 |
| Bsh1236I | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3828 |
| BshVI | ATCGAT | 1 cut(s) | 398 |
| BsiEI | CGRYCG | 1 cut(s) | 3828 |
| BsiHKAI | GWGCWC | 8 cut(s) | 150, 2140, 2500, 3076, 3241, 3516, 3613, 3714 |
| BsiHKCI | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| BsiSI | CCGG | 6 cut(s) | 302, 737, 1751, 1757, 2130, 2657 |
| BslFI | GGGAC | 4 cut(s) | 1729, 1859, 2412, 2708 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 201, 304, 1160, 1161, 1631, 2839, 2854, 2931, 3795 |
| BsmAI | GTCTC | 9 cut(s) | 29, 331, 1339, 1942, 2155, 2419, 2910, 3327, 3733 |
| BsmBI | CGTCTC | 1 cut(s) | 2910 |
| BsmFI | GGGAC | 4 cut(s) | 1729, 1859, 2412, 2708 |
| BsmI | GAATGC | 2 cut(s) | 3043, 3211 |
| Bso31I | GGTCTC | 1 cut(s) | 2419 |
| BsoBI | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| Bsp119I | TTCGAA | 1 cut(s) | 806 |
| Bsp13I | TCCGGA | 1 cut(s) | 2129 |
| Bsp1407I | TGTACA | 1 cut(s) | 1135 |
| Bsp19I | CCATGG | 3 cut(s) | 120, 1002, 2879 |
| BspACI | CCGC | 8 cut(s) | 541, 1186, 1321, 1382, 2595, 3509, 3824, 3828 |
| BspCNI | CTCAG | 6 cut(s) | 373, 2080, 2415, 2847, 3747, 3756 |
| BspDI | ATCGAT | 1 cut(s) | 398 |
| BspEI | TCCGGA | 1 cut(s) | 2129 |
| BspFNI | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| BspHI | TCATGA | 3 cut(s) | 390, 3180, 3684 |
| BspLI | GGNNCC | 8 cut(s) | 1755, 1875, 2290, 2400, 2848, 3097, 3442, 3474 |
| BspMAI | CTGCAG | 2 cut(s) | 823, 2740 |
| BspMI | ACCTGC | 2 cut(s) | 2446, 2729 |
| BspPI | GGATC | 4 cut(s) | 71, 1426, 2154, 3806 |
| BspQI | GCTCTTC | 2 cut(s) | 1131, 3768 |
| BspT104I | TTCGAA | 1 cut(s) | 806 |
| BspTI | CTTAAG | 2 cut(s) | 332, 2537 |
| BspTNI | GGTCTC | 1 cut(s) | 2419 |
| BsrBI | CCGCTC | 1 cut(s) | 3824 |
| BsrDI | GCAATG | 3 cut(s) | 1330, 1686, 3324 |
| BsrFI | RCCGGY | 2 cut(s) | 301, 736 |
| BsrGI | TGTACA | 1 cut(s) | 1135 |
| BssAI | RCCGGY | 2 cut(s) | 301, 736 |
| BssNI | GRCGYC | 1 cut(s) | 3568 |
| BssSI | CACGAG | 1 cut(s) | 2517 |
| BssT1I | CCWWGG | 4 cut(s) | 120, 1002, 2853, 2879 |
| Bst2BI | CACGAG | 1 cut(s) | 2517 |
| Bst4CI | ACNGT | 8 cut(s) | 99, 536, 655, 1317, 1743, 2068, 2968, 2984 |
| Bst6I | CTCTTC | 4 cut(s) | 608, 1131, 3183, 3768 |
| BstACI | GRCGYC | 1 cut(s) | 3568 |
| BstAFI | CTTAAG | 2 cut(s) | 332, 2537 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1031, 3236 |
| BstAUI | TGTACA | 1 cut(s) | 1135 |
| BstBAI | YACGTR | 1 cut(s) | 3149 |
| BstBI | TTCGAA | 1 cut(s) | 806 |
| BstDEI | CTNAG | 6 cut(s) | 360, 2088, 2423, 2834, 3743, 3755 |
| BstDSI | CCRYGG | 5 cut(s) | 120, 946, 1002, 2064, 2879 |
| BstF5I | GGATG | 5 cut(s) | 1012, 1780, 2029, 2072, 3727 |
| BstFNI | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| BstHHI | GCGC | 1 cut(s) | 3496 |
| BstMAI | GTCTC | 9 cut(s) | 29, 331, 1339, 1942, 2155, 2419, 2910, 3327, 3733 |
| BstMCI | CGRYCG | 1 cut(s) | 3828 |
| BstNSI | RCATGY | 5 cut(s) | 1198, 1516, 1624, 1890, 3234 |
| BstSFI | CTRYAG | 5 cut(s) | 819, 1343, 1836, 2529, 2736 |
| BstSLI | GKGCMC | 4 cut(s) | 61, 195, 243, 3613 |
| BstUI | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| BstV2I | GAAGAC | 3 cut(s) | 2418, 3169, 3275 |
| BstX2I | RGATCY | 1 cut(s) | 920 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 160, 3107 |
| BstYI | RGATCY | 1 cut(s) | 920 |
| BstZI | CGGCCG | 1 cut(s) | 3825 |
| Bsu15I | ATCGAT | 1 cut(s) | 398 |
| BsuI | GTATCC | 1 cut(s) | 1161 |
| BsuTUI | ATCGAT | 1 cut(s) | 398 |
| BtgI | CCRYGG | 5 cut(s) | 120, 946, 1002, 2064, 2879 |
| BtgZI | GCGATG | 2 cut(s) | 181, 2944 |
| BtrI | CACGTC | 2 cut(s) | 1489, 3730 |
| BtsCI | GGATG | 5 cut(s) | 1012, 1780, 2029, 2072, 3727 |
| BtsI | GCAGTG | 5 cut(s) | 40, 912, 2765, 3241, 3767 |
| BtsIMutI | CAGTG | 9 cut(s) | 40, 912, 1288, 1349, 1453, 2765, 2989, 3241, 3767 |
| BveI | ACCTGC | 2 cut(s) | 2446, 2729 |
| CaiI | CAGNNNCTG | 3 cut(s) | 27, 1351, 2198 |
| CciI | TCATGA | 3 cut(s) | 390, 3180, 3684 |
| CciNI | GCGGCCGC | 1 cut(s) | 3825 |
| CfoI | GCGC | 1 cut(s) | 3496 |
| Cfr10I | RCCGGY | 2 cut(s) | 301, 736 |
| Cfr13I | GGNCC | 6 cut(s) | 371, 1163, 1873, 2399, 2649, 2846 |
| ClaI | ATCGAT | 1 cut(s) | 398 |
| CseI | GACGC | 5 cut(s) | 1031, 1505, 1605, 2486, 2892 |
| Csp6I | GTAC | 7 cut(s) | 537, 740, 1136, 2060, 2092, 3154, 3813 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1200, 1235 |
| CviQI | GTAC | 7 cut(s) | 537, 740, 1136, 2060, 2092, 3154, 3813 |
| DdeI | CTNAG | 6 cut(s) | 360, 2088, 2423, 2834, 3743, 3755 |
| DraIII | CACNNNGTG | 1 cut(s) | 1355 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2945 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2945 |
| EaeI | YGGCCR | 3 cut(s) | 660, 1577, 3825 |
| EagI | CGGCCG | 1 cut(s) | 3825 |
| Eam1104I | CTCTTC | 4 cut(s) | 608, 1131, 3183, 3768 |
| EarI | CTCTTC | 4 cut(s) | 608, 1131, 3183, 3768 |
| Ecl136II | GAGCTC | 1 cut(s) | 148 |
| EclXI | CGGCCG | 1 cut(s) | 3825 |
| Eco130I | CCWWGG | 4 cut(s) | 120, 1002, 2853, 2879 |
| Eco147I | AGGCCT | 2 cut(s) | 1110, 1535 |
| Eco24I | GRGCYC | 1 cut(s) | 150 |
| Eco31I | GGTCTC | 1 cut(s) | 2419 |
| Eco32I | GATATC | 3 cut(s) | 1013, 2449, 3293 |
| Eco47I | GGWCC | 2 cut(s) | 1873, 2399 |
| Eco52I | CGGCCG | 1 cut(s) | 3825 |
| Eco53kI | GAGCTC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 2 cut(s) | 828, 2619 |
| Eco88I | CYCGRG | 6 cut(s) | 867, 2607, 3052, 3324, 3347, 3713 |
| EcoICRI | GAGCTC | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1163, 2399 |
| EcoRI | GAATTC | 1 cut(s) | 708 |
| EcoRV | GATATC | 3 cut(s) | 1013, 2449, 3293 |
| EcoT14I | CCWWGG | 4 cut(s) | 120, 1002, 2853, 2879 |
| EcoT22I | ATGCAT | 5 cut(s) | 508, 1196, 1996, 3213, 3438 |
| EcoT38I | GRGCYC | 1 cut(s) | 150 |
| ErhI | CCWWGG | 4 cut(s) | 120, 1002, 2853, 2879 |
| Esp3I | CGTCTC | 1 cut(s) | 2910 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2098, 2130, 2344, 2376 |
| FaqI | GGGAC | 4 cut(s) | 1729, 1859, 2412, 2708 |
| FauI | CCCGC | 2 cut(s) | 548, 1193 |
| FbaI | TGATCA | 1 cut(s) | 3399 |
| FblI | GTMKAC | 4 cut(s) | 289, 1552, 1839, 3726 |
| FokI | GGATG | 5 cut(s) | 1019, 1787, 2016, 2059, 3734 |
| FriOI | GRGCYC | 1 cut(s) | 150 |
| FspBI | CTAG | 7 cut(s) | 954, 1310, 1545, 2120, 2702, 2727, 2774 |
| GlaI | GCGC | 1 cut(s) | 3495 |
| GsaI | CCCAGC | 4 cut(s) | 181, 301, 1455, 3797 |
| GsuI | CTGGAG | 6 cut(s) | 233, 1321, 1659, 2175, 2736, 2960 |
| HapII | CCGG | 6 cut(s) | 302, 737, 1751, 1757, 2130, 2657 |
| HgaI | GACGC | 5 cut(s) | 1031, 1505, 1605, 2486, 2892 |
| HhaI | GCGC | 1 cut(s) | 3496 |
| Hin1I | GRCGYC | 1 cut(s) | 3568 |
| Hin6I | GCGC | 1 cut(s) | 3494 |
| HinP1I | GCGC | 1 cut(s) | 3494 |
| HincII | GTYRAC | 3 cut(s) | 1021, 2476, 3369 |
| HindII | GTYRAC | 3 cut(s) | 1021, 2476, 3369 |
| HindIII | AAGCTT | 1 cut(s) | 2250 |
| HpaI | GTTAAC | 1 cut(s) | 3369 |
| HpaII | CCGG | 6 cut(s) | 302, 737, 1751, 1757, 2130, 2657 |
| HphI | GGTGA | 3 cut(s) | 1367, 2132, 3340 |
| Hpy99I | CGWCG | 1 cut(s) | 3570 |
| HpyAV | CCTTC | 6 cut(s) | 211, 515, 1154, 2791, 3426, 3458 |
| HpyCH4III | ACNGT | 8 cut(s) | 99, 536, 655, 1317, 1743, 2068, 2968, 2984 |
| HpyCH4IV | ACGT | 7 cut(s) | 156, 189, 292, 1488, 3148, 3568, 3729 |
| HpyF3I | CTNAG | 6 cut(s) | 360, 2088, 2423, 2834, 3743, 3755 |
| HpySE526I | ACGT | 7 cut(s) | 156, 189, 292, 1488, 3148, 3568, 3729 |
| Hsp92I | GRCGYC | 1 cut(s) | 3568 |
| HspAI | GCGC | 1 cut(s) | 3494 |
| Kpn2I | TCCGGA | 1 cut(s) | 2129 |
| Ksp22I | TGATCA | 1 cut(s) | 3399 |
| KspAI | GTTAAC | 1 cut(s) | 3369 |
| LguI | GCTCTTC | 2 cut(s) | 1131, 3768 |
| LmnI | GCTCC | 8 cut(s) | 43, 145, 1455, 3071, 3314, 3446, 3521, 3821 |
| MaeI | CTAG | 7 cut(s) | 954, 1310, 1545, 2120, 2702, 2727, 2774 |
| MaeII | ACGT | 7 cut(s) | 156, 189, 292, 1488, 3148, 3568, 3729 |
| MaeIII | GTNAC | 6 cut(s) | 446, 1608, 2602, 2936, 3196, 3676 |
| MbiI | CCGCTC | 1 cut(s) | 3824 |
| MfeI | CAATTG | 4 cut(s) | 483, 494, 564, 2895 |
| MflI | RGATCY | 1 cut(s) | 920 |
| MlsI | TGGCCA | 2 cut(s) | 662, 1579 |
| MluNI | TGGCCA | 2 cut(s) | 662, 1579 |
| MlyI | GAGTC | 9 cut(s) | 309, 1369, 1939, 2157, 2204, 2797, 2908, 3536, 3735 |
| MmeI | TCCRAC | 3 cut(s) | 132, 1804, 3049 |
| Mox20I | TGGCCA | 2 cut(s) | 662, 1579 |
| Mph1103I | ATGCAT | 5 cut(s) | 508, 1196, 1996, 3213, 3438 |
| MroI | TCCGGA | 1 cut(s) | 2129 |
| MroXI | GAANNNNTTC | 4 cut(s) | 408, 525, 2460, 2509 |
| MscI | TGGCCA | 2 cut(s) | 662, 1579 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1478, 3105 |
| Msp20I | TGGCCA | 2 cut(s) | 662, 1579 |
| MspA1I | CMGCKG | 4 cut(s) | 1400, 2597, 2870, 3830 |
| MspCI | CTTAAG | 2 cut(s) | 332, 2537 |
| MspI | CCGG | 6 cut(s) | 302, 737, 1751, 1757, 2130, 2657 |
| MunI | CAATTG | 4 cut(s) | 483, 494, 564, 2895 |
| Mva1269I | GAATGC | 2 cut(s) | 3043, 3211 |
| MvnI | CGCG | 4 cut(s) | 200, 543, 2903, 3509 |
| NcoI | CCATGG | 3 cut(s) | 120, 1002, 2879 |
| NlaIV | GGNNCC | 8 cut(s) | 1755, 1875, 2290, 2400, 2848, 3097, 3442, 3474 |
| NmuCI | GTSAC | 2 cut(s) | 446, 2936 |
| NotI | GCGGCCGC | 1 cut(s) | 3825 |
| NsiI | ATGCAT | 5 cut(s) | 508, 1196, 1996, 3213, 3438 |
| NspI | RCATGY | 5 cut(s) | 1198, 1516, 1624, 1890, 3234 |
| NspV | TTCGAA | 1 cut(s) | 806 |
| PaeI | GCATGC | 3 cut(s) | 1198, 1624, 3234 |
| PaeR7I | CTCGAG | 3 cut(s) | 867, 3052, 3713 |
| PagI | TCATGA | 3 cut(s) | 390, 3180, 3684 |
| PaqCI | CACCTGC | 1 cut(s) | 2729 |
| PasI | CCCWGGG | 1 cut(s) | 452 |
| PceI | AGGCCT | 2 cut(s) | 1110, 1535 |
| PciSI | GCTCTTC | 2 cut(s) | 1131, 3768 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3154 |
| PctI | GAATGC | 2 cut(s) | 3043, 3211 |
| PdmI | GAANNNNTTC | 4 cut(s) | 408, 525, 2460, 2509 |
| PfeI | GAWTC | 6 cut(s) | 404, 457, 2665, 2987, 3136, 3641 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 201, 304, 2931 |
| PfoI | TCCNGGA | 3 cut(s) | 422, 1940, 2451 |
| PleI | GAGTC | 9 cut(s) | 309, 1369, 1939, 2157, 2204, 2796, 2908, 3536, 3735 |
| PpsI | GAGTC | 9 cut(s) | 309, 1369, 1939, 2157, 2204, 2796, 2908, 3536, 3735 |
| Ppu21I | YACGTR | 1 cut(s) | 3149 |
| PpuMI | RGGWCCY | 1 cut(s) | 2399 |
| PsiI | TTATAA | 1 cut(s) | 833 |
| Psp124BI | GAGCTC | 1 cut(s) | 150 |
| Psp5II | RGGWCCY | 1 cut(s) | 2399 |
| PspFI | CCCAGC | 4 cut(s) | 177, 297, 1451, 3793 |
| PspN4I | GGNNCC | 8 cut(s) | 1755, 1875, 2290, 2400, 2848, 3097, 3442, 3474 |
| PspPI | GGNCC | 6 cut(s) | 371, 1163, 1873, 2399, 2649, 2846 |
| PspPPI | RGGWCCY | 1 cut(s) | 2399 |
| PspXI | VCTCGAGB | 1 cut(s) | 3713 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1830, 1862 |
| PstI | CTGCAG | 2 cut(s) | 823, 2740 |
| PstNI | CAGNNNCTG | 3 cut(s) | 27, 1351, 2198 |
| PsuI | RGATCY | 1 cut(s) | 920 |
| PvuII | CAGCTG | 2 cut(s) | 1400, 2870 |
| RsaI | GTAC | 7 cut(s) | 538, 741, 1137, 2061, 2093, 3155, 3814 |
| RsaNI | GTAC | 7 cut(s) | 537, 740, 1136, 2060, 2092, 3154, 3813 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1478, 3105 |
| SacI | GAGCTC | 1 cut(s) | 150 |
| SapI | GCTCTTC | 2 cut(s) | 1131, 3768 |
| Sau96I | GGNCC | 6 cut(s) | 371, 1163, 1873, 2399, 2649, 2846 |
| SchI | GAGTC | 9 cut(s) | 309, 1369, 1939, 2157, 2204, 2797, 2908, 3536, 3735 |
| SfcI | CTRYAG | 5 cut(s) | 819, 1343, 1836, 2529, 2736 |
| Sfr274I | CTCGAG | 3 cut(s) | 867, 3052, 3713 |
| SfuI | TTCGAA | 1 cut(s) | 806 |
| SinI | GGWCC | 2 cut(s) | 1873, 2399 |
| SlaI | CTCGAG | 3 cut(s) | 867, 3052, 3713 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1478, 3105 |
| SmlI | CTYRAG | 8 cut(s) | 332, 573, 867, 1629, 2039, 2537, 3052, 3713 |
| SmoI | CTYRAG | 8 cut(s) | 332, 573, 867, 1629, 2039, 2537, 3052, 3713 |
| SphI | GCATGC | 3 cut(s) | 1198, 1624, 3234 |
| SseBI | AGGCCT | 2 cut(s) | 1110, 1535 |
| SsiI | CCGC | 8 cut(s) | 541, 1186, 1321, 1382, 2595, 3509, 3824, 3828 |
| SspMI | CTAG | 7 cut(s) | 954, 1310, 1545, 2120, 2702, 2727, 2774 |
| SstI | GAGCTC | 1 cut(s) | 150 |
| StuI | AGGCCT | 2 cut(s) | 1110, 1535 |
| StyI | CCWWGG | 4 cut(s) | 120, 1002, 2853, 2879 |
| TaaI | ACNGT | 8 cut(s) | 99, 536, 655, 1317, 1743, 2068, 2968, 2984 |
| TaiI | ACGT | 7 cut(s) | 159, 192, 295, 1491, 3151, 3571, 3732 |
| TaqI | TCGA | 9 cut(s) | 398, 806, 868, 1179, 2149, 3053, 3266, 3714, 3843 |
| TaqII | GACCGA | 1 cut(s) | 2829 |
| TatI | WGTACW | 1 cut(s) | 1135 |
| TauI | GCSGC | 3 cut(s) | 1323, 3827, 3830 |
| TfiI | GAWTC | 6 cut(s) | 404, 457, 2665, 2987, 3136, 3641 |
| TscAI | CASTG | 9 cut(s) | 40, 912, 1295, 1356, 1453, 2772, 2989, 3241, 3767 |
| TseFI | GTSAC | 2 cut(s) | 446, 2936 |
| Tsp45I | GTSAC | 2 cut(s) | 446, 2936 |
| TspGWI | ACGGA | 1 cut(s) | 2301 |
| TspRI | CASTG | 9 cut(s) | 40, 912, 1295, 1356, 1453, 2772, 2989, 3241, 3767 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 201, 304, 2931 |
| Vha464I | CTTAAG | 2 cut(s) | 332, 2537 |
| VneI | GTGCAC | 1 cut(s) | 3609 |
| VpaK11BI | GGWCC | 2 cut(s) | 1873, 2399 |
| XapI | RAATTY | 3 cut(s) | 427, 708, 802 |
| XceI | RCATGY | 5 cut(s) | 1198, 1516, 1624, 1890, 3234 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1613, 3107 |
| XhoI | CTCGAG | 3 cut(s) | 867, 3052, 3713 |
| XmiI | GTMKAC | 4 cut(s) | 289, 1552, 1839, 3726 |
| XmnI | GAANNNNTTC | 4 cut(s) | 408, 525, 2460, 2509 |
| XspI | CTAG | 7 cut(s) | 954, 1310, 1545, 2120, 2702, 2727, 2774 |
| ZraI | GACGTC | 1 cut(s) | 3569 |
| Zsp2I | ATGCAT | 5 cut(s) | 508, 1196, 1996, 3213, 3438 |