Mediator of RNA polymerase II transcription subunit 33A-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23590 |
| fragaria_vesca | FvH4_4g14380 FvH4_4g14390 |
| malus_domestica | MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1 |
| prunus_persica | Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1 |
| pyrus_communis | pycom13g15720 pycom16g15330 |
| rosa_chinensis | RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541 |
| rosa_laevigata | RLG00000007855 RLG00000007856 |
| rosa_multiflora | Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00361790 Rroxscaffold_5G00361800 |
| rosa_rugosa | Rorug04G0154000 Rorug04G0154100.1 |
| rosa_samantha | Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000 |
| rosa_wichuraiana | Rw4G018240 Rw4G018250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3050 |
| Acc36I | ACCTGC | 1 cut(s) | 2551 |
| AccB1I | GGYRCC | 1 cut(s) | 3671 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 192, 295, 1275, 3097 |
| AccI | GTMKAC | 2 cut(s) | 579, 2313 |
| AciI | CCGC | 5 cut(s) | 754, 1303, 1306, 3034, 3655 |
| AclI | AACGTT | 1 cut(s) | 2932 |
| AclWI | GGATC | 6 cut(s) | 62, 115, 1750, 2259, 3195, 3208 |
| AcoI | YGGCCR | 2 cut(s) | 1562, 3187 |
| AcsI | RAATTY | 7 cut(s) | 699, 793, 2479, 2718, 3219, 3240, 3683 |
| AcuI | CTGAAG | 2 cut(s) | 2135, 2724 |
| AcyI | GRCGYC | 1 cut(s) | 3440 |
| AfaI | GTAC | 6 cut(s) | 1128, 2166, 2198, 3260, 3813, 3901 |
| AflII | CTTAAG | 2 cut(s) | 323, 344 |
| AflIII | ACRYGT | 2 cut(s) | 3253, 3750 |
| AgeI | ACCGGT | 1 cut(s) | 3261 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 268, 300, 2479, 2511 |
| Alw21I | GWGCWC | 4 cut(s) | 2605, 3181, 3603, 3700 |
| Alw26I | GTCTC | 6 cut(s) | 322, 354, 861, 1324, 1854, 3820 |
| Alw44I | GTGCAC | 1 cut(s) | 3696 |
| AlwI | GGATC | 6 cut(s) | 62, 115, 1750, 2259, 3195, 3208 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2303 |
| Ama87I | CYCGRG | 2 cut(s) | 858, 2712 |
| ApaI | GGGCCC | 1 cut(s) | 1157 |
| ApaLI | GTGCAC | 1 cut(s) | 3696 |
| ApoI | RAATTY | 7 cut(s) | 699, 793, 2479, 2718, 3219, 3240, 3683 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3912, 3944 |
| AseI | ATTAAT | 1 cut(s) | 1050 |
| AsiGI | ACCGGT | 1 cut(s) | 3261 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2565, 2614 |
| AspLEI | GCGC | 1 cut(s) | 1503 |
| AsuHPI | GGTGA | 5 cut(s) | 1352, 2237, 3216, 3227, 3427 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| AvaI | CYCGRG | 2 cut(s) | 858, 2712 |
| AvaII | GGWCC | 3 cut(s) | 1141, 1978, 2504 |
| BaeGI | GKGCMC | 3 cut(s) | 186, 1157, 3700 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2180, 2213, 3242, 3275 |
| BalI | TGGCCA | 2 cut(s) | 1564, 3189 |
| BamHI | GGATCC | 1 cut(s) | 3200 |
| BanI | GGYRCC | 1 cut(s) | 3671 |
| BanII | GRGCYC | 1 cut(s) | 1157 |
| BauI | CACGAG | 1 cut(s) | 2622 |
| BbsI | GAAGAC | 5 cut(s) | 419, 2523, 2617, 3046, 3274 |
| Bbv12I | GWGCWC | 4 cut(s) | 2605, 3181, 3603, 3700 |
| BccI | CCATC | 6 cut(s) | 543, 992, 1487, 2412, 3314, 3698 |
| BceAI | ACGGC | 1 cut(s) | 3668 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 829, 863 |
| BclI | TGATCA | 2 cut(s) | 378, 3486 |
| BcoDI | GTCTC | 6 cut(s) | 322, 354, 861, 1324, 1854, 3820 |
| BfmI | CTRYAG | 4 cut(s) | 2634, 2841, 3080, 3399 |
| BfrI | CTTAAG | 2 cut(s) | 323, 344 |
| BfuAI | ACCTGC | 1 cut(s) | 2551 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1394 |
| BlpI | GCTNAGC | 1 cut(s) | 1702 |
| Bme18I | GGWCC | 3 cut(s) | 1141, 1978, 2504 |
| BmeT110I | CYCGRG | 2 cut(s) | 858, 2712 |
| BmrI | ACTGGG | 1 cut(s) | 2751 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| BmuI | ACTGGG | 1 cut(s) | 2751 |
| BpiI | GAAGAC | 5 cut(s) | 419, 2523, 2617, 3046, 3274 |
| BpmI | CTGGAG | 7 cut(s) | 224, 465, 795, 1306, 1644, 2143, 2841 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1796 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1702 |
| BpuEI | CTTGAG | 3 cut(s) | 1599, 2165, 3142 |
| BsaAI | YACGTR | 2 cut(s) | 3254, 3751 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1002, 1733, 3199 |
| BsaHI | GRCGYC | 1 cut(s) | 3440 |
| BsaJI | CCNNGG | 6 cut(s) | 531, 586, 2958, 2984, 3190, 3667 |
| BsaWI | WCCGGW | 2 cut(s) | 1855, 3261 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 438, 468, 793, 823, 1642, 1672, 2839, 2869 |
| Bse118I | RCCGGY | 1 cut(s) | 3261 |
| Bse3DI | GCAATG | 5 cut(s) | 943, 999, 1524, 3169, 3411 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1002, 1733, 3199 |
| BseDI | CCNNGG | 6 cut(s) | 531, 586, 2958, 2984, 3190, 3667 |
| BseGI | GGATG | 7 cut(s) | 640, 1003, 2134, 2177, 3148, 3801, 3814 |
| BseJI | GATNNNNATC | 3 cut(s) | 1002, 1733, 3199 |
| BseMI | GCAATG | 5 cut(s) | 943, 999, 1524, 3169, 3411 |
| BseMII | CTCAG | 7 cut(s) | 144, 365, 2184, 2953, 3425, 3522, 3821 |
| BseRI | GAGGAG | 7 cut(s) | 622, 1244, 1353, 1356, 1842, 2130, 2610 |
| BseSI | GKGCMC | 3 cut(s) | 186, 1157, 3700 |
| BseYI | CCCAGC | 2 cut(s) | 168, 288 |
| BsgI | GTGCAG | 3 cut(s) | 714, 3766, 3930 |
| BshNI | GGYRCC | 1 cut(s) | 3671 |
| BshTI | ACCGGT | 1 cut(s) | 3261 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2605, 3181, 3603, 3700 |
| BsiHKCI | CYCGRG | 2 cut(s) | 858, 2712 |
| BsiSI | CCGG | 3 cut(s) | 1856, 2762, 3262 |
| BslFI | GGGAC | 5 cut(s) | 626, 1154, 1964, 2860, 2950 |
| BsmAI | GTCTC | 6 cut(s) | 322, 354, 861, 1324, 1854, 3820 |
| BsmFI | GGGAC | 5 cut(s) | 626, 1154, 1964, 2860, 2950 |
| BsmI | GAATGC | 2 cut(s) | 2099, 3316 |
| BsoBI | CYCGRG | 2 cut(s) | 858, 2712 |
| Bsp120I | GGGCCC | 1 cut(s) | 1153 |
| Bsp1286I | GDGCHC | 6 cut(s) | 186, 1157, 2605, 3181, 3603, 3700 |
| Bsp1407I | TGTACA | 2 cut(s) | 1126, 3811 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1702 |
| Bsp19I | CCATGG | 3 cut(s) | 586, 2984, 3190 |
| BspACI | CCGC | 5 cut(s) | 754, 1303, 1306, 3034, 3655 |
| BspCNI | CTCAG | 7 cut(s) | 143, 364, 2185, 2952, 3424, 3523, 3822 |
| BspHI | TCATGA | 2 cut(s) | 381, 3285 |
| BspMAI | CTGCAG | 2 cut(s) | 2845, 3084 |
| BspMI | ACCTGC | 1 cut(s) | 2551 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BspPI | GGATC | 6 cut(s) | 62, 115, 1750, 2259, 3195, 3208 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 1122 |
| BspT107I | GGYRCC | 1 cut(s) | 3671 |
| BspTI | CTTAAG | 2 cut(s) | 323, 344 |
| BsrDI | GCAATG | 5 cut(s) | 943, 999, 1524, 3169, 3411 |
| BsrFI | RCCGGY | 1 cut(s) | 3261 |
| BsrGI | TGTACA | 2 cut(s) | 1126, 3811 |
| BssAI | RCCGGY | 1 cut(s) | 3261 |
| BssECI | CCNNGG | 6 cut(s) | 531, 586, 2958, 2984, 3190, 3667 |
| BssNI | GRCGYC | 1 cut(s) | 3440 |
| BssSI | CACGAG | 1 cut(s) | 2622 |
| BssT1I | CCWWGG | 5 cut(s) | 586, 2958, 2984, 3190, 3667 |
| Bst2BI | CACGAG | 1 cut(s) | 2622 |
| Bst4CI | ACNGT | 6 cut(s) | 90, 646, 762, 1949, 2173, 3073 |
| Bst6I | CTCTTC | 5 cut(s) | 258, 599, 1122, 3288, 3818 |
| BstACI | GRCGYC | 1 cut(s) | 3440 |
| BstAFI | CTTAAG | 2 cut(s) | 323, 344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3593 |
| BstAUI | TGTACA | 2 cut(s) | 1126, 3811 |
| BstBAI | YACGTR | 2 cut(s) | 3254, 3751 |
| BstC8I | GCNNGC | 9 cut(s) | 141, 715, 729, 768, 1187, 1522, 2631, 2950, 3744 |
| BstDSI | CCRYGG | 3 cut(s) | 586, 2984, 3190 |
| BstF5I | GGATG | 7 cut(s) | 640, 1003, 2134, 2177, 3148, 3801, 3814 |
| BstHHI | GCGC | 1 cut(s) | 1503 |
| BstMAI | GTCTC | 6 cut(s) | 322, 354, 861, 1324, 1854, 3820 |
| BstNSI | RCATGY | 6 cut(s) | 1189, 1501, 1995, 2361, 2673, 3339 |
| BstSFI | CTRYAG | 4 cut(s) | 2634, 2841, 3080, 3399 |
| BstSLI | GKGCMC | 3 cut(s) | 186, 1157, 3700 |
| BstV2I | GAAGAC | 5 cut(s) | 419, 2523, 2617, 3046, 3274 |
| BstX2I | RGATCY | 1 cut(s) | 3200 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 151, 3212 |
| BstYI | RGATCY | 1 cut(s) | 3200 |
| BtgI | CCRYGG | 3 cut(s) | 586, 2984, 3190 |
| BtgZI | GCGATG | 1 cut(s) | 1424 |
| BtsCI | GGATG | 7 cut(s) | 640, 1003, 2134, 2177, 3148, 3801, 3814 |
| BtsI | GCAGTG | 2 cut(s) | 1790, 3603 |
| BtsIMutI | CAGTG | 7 cut(s) | 138, 300, 438, 1790, 3102, 3523, 3603 |
| BveI | ACCTGC | 1 cut(s) | 2551 |
| Cac8I | GCNNGC | 9 cut(s) | 141, 715, 729, 768, 1187, 1522, 2631, 2950, 3744 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2303 |
| CciI | TCATGA | 2 cut(s) | 381, 3285 |
| CfoI | GCGC | 1 cut(s) | 1503 |
| Cfr10I | RCCGGY | 1 cut(s) | 3261 |
| CseI | GACGC | 2 cut(s) | 1022, 3429 |
| CsiI | ACCWGGT | 1 cut(s) | 2223 |
| Csp6I | GTAC | 6 cut(s) | 1127, 2165, 2197, 3259, 3812, 3900 |
| CspAI | ACCGGT | 1 cut(s) | 3261 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1191, 1226 |
| CviQI | GTAC | 6 cut(s) | 1127, 2165, 2197, 3259, 3812, 3900 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3050 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3050 |
| EaeI | YGGCCR | 2 cut(s) | 1562, 3187 |
| Eam1104I | CTCTTC | 5 cut(s) | 258, 599, 1122, 3288, 3818 |
| EarI | CTCTTC | 5 cut(s) | 258, 599, 1122, 3288, 3818 |
| Eco130I | CCWWGG | 5 cut(s) | 586, 2958, 2984, 3190, 3667 |
| Eco147I | AGGCCT | 2 cut(s) | 212, 1520 |
| Eco24I | GRGCYC | 1 cut(s) | 1157 |
| Eco32I | GATATC | 4 cut(s) | 1761, 2554, 2827, 3714 |
| Eco47I | GGWCC | 3 cut(s) | 1141, 1978, 2504 |
| Eco57I | CTGAAG | 2 cut(s) | 2135, 2724 |
| Eco88I | CYCGRG | 2 cut(s) | 858, 2712 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1141, 1153, 1154, 1785 |
| EcoRI | GAATTC | 3 cut(s) | 699, 2479, 3240 |
| EcoRV | GATATC | 4 cut(s) | 1761, 2554, 2827, 3714 |
| EcoT14I | CCWWGG | 5 cut(s) | 586, 2958, 2984, 3190, 3667 |
| EcoT22I | ATGCAT | 4 cut(s) | 499, 1187, 2101, 3318 |
| EcoT38I | GRGCYC | 1 cut(s) | 1157 |
| ErhI | CCWWGG | 5 cut(s) | 586, 2958, 2984, 3190, 3667 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2203, 2235 |
| FaqI | GGGAC | 5 cut(s) | 626, 1154, 1964, 2860, 2950 |
| FbaI | TGATCA | 2 cut(s) | 378, 3486 |
| FblI | GTMKAC | 2 cut(s) | 579, 2313 |
| FokI | GGATG | 7 cut(s) | 647, 1010, 2121, 2164, 3155, 3808, 3821 |
| FriOI | GRGCYC | 1 cut(s) | 1157 |
| GlaI | GCGC | 1 cut(s) | 1502 |
| GsaI | CCCAGC | 2 cut(s) | 172, 292 |
| GsuI | CTGGAG | 7 cut(s) | 224, 465, 795, 1306, 1644, 2143, 2841 |
| HapII | CCGG | 3 cut(s) | 1856, 2762, 3262 |
| HgaI | GACGC | 2 cut(s) | 1022, 3429 |
| HhaI | GCGC | 1 cut(s) | 1503 |
| Hin1I | GRCGYC | 1 cut(s) | 3440 |
| Hin6I | GCGC | 1 cut(s) | 1501 |
| HinP1I | GCGC | 1 cut(s) | 1501 |
| HincII | GTYRAC | 6 cut(s) | 39, 831, 1012, 1632, 1945, 3456 |
| HindII | GTYRAC | 6 cut(s) | 39, 831, 1012, 1632, 1945, 3456 |
| HindIII | AAGCTT | 1 cut(s) | 1699 |
| HpaI | GTTAAC | 2 cut(s) | 39, 3456 |
| HpaII | CCGG | 3 cut(s) | 1856, 2762, 3262 |
| HphI | GGTGA | 5 cut(s) | 1352, 2237, 3216, 3227, 3427 |
| HpyAV | CCTTC | 8 cut(s) | 202, 506, 686, 1067, 1462, 2120, 3513, 3545 |
| HpyCH4III | ACNGT | 6 cut(s) | 90, 646, 762, 1949, 2173, 3073 |
| HpyCH4IV | ACGT | 6 cut(s) | 1582, 1917, 2932, 3253, 3737, 3750 |
| HpySE526I | ACGT | 6 cut(s) | 1582, 1917, 2932, 3253, 3737, 3750 |
| Hsp92I | GRCGYC | 1 cut(s) | 3440 |
| HspAI | GCGC | 1 cut(s) | 1501 |
| KflI | GGGWCCC | 1 cut(s) | 1141 |
| Ksp22I | TGATCA | 2 cut(s) | 378, 3486 |
| KspAI | GTTAAC | 2 cut(s) | 39, 3456 |
| LguI | GCTCTTC | 2 cut(s) | 258, 1122 |
| LmnI | GCTCC | 5 cut(s) | 136, 1816, 1909, 3176, 3608 |
| MabI | ACCWGGT | 1 cut(s) | 2223 |
| MaeII | ACGT | 6 cut(s) | 1582, 1917, 2932, 3253, 3737, 3750 |
| MfeI | CAATTG | 3 cut(s) | 474, 485, 3000 |
| MflI | RGATCY | 1 cut(s) | 3200 |
| MhlI | GDGCHC | 6 cut(s) | 186, 1157, 2605, 3181, 3603, 3700 |
| MlsI | TGGCCA | 2 cut(s) | 1564, 3189 |
| MluNI | TGGCCA | 2 cut(s) | 1564, 3189 |
| MlyI | GAGTC | 6 cut(s) | 1354, 2044, 2309, 2972, 3013, 3403 |
| MmeI | TCCRAC | 5 cut(s) | 123, 1293, 1784, 1909, 3176 |
| Mox20I | TGGCCA | 2 cut(s) | 1564, 3189 |
| Mph1103I | ATGCAT | 4 cut(s) | 499, 1187, 2101, 3318 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2565, 2614 |
| MscI | TGGCCA | 2 cut(s) | 1564, 3189 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1463, 3013, 3210, 3311, 3677 |
| Msp20I | TGGCCA | 2 cut(s) | 1564, 3189 |
| MspA1I | CMGCKG | 4 cut(s) | 754, 1275, 2975, 3914 |
| MspCI | CTTAAG | 2 cut(s) | 323, 344 |
| MspI | CCGG | 3 cut(s) | 1856, 2762, 3262 |
| MunI | CAATTG | 3 cut(s) | 474, 485, 3000 |
| Mva1269I | GAATGC | 2 cut(s) | 2099, 3316 |
| NcoI | CCATGG | 3 cut(s) | 586, 2984, 3190 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NmuCI | GTSAC | 2 cut(s) | 842, 3041 |
| NsiI | ATGCAT | 4 cut(s) | 499, 1187, 2101, 3318 |
| NspI | RCATGY | 6 cut(s) | 1189, 1501, 1995, 2361, 2673, 3339 |
| PaeI | GCATGC | 1 cut(s) | 1189 |
| PaeR7I | CTCGAG | 2 cut(s) | 858, 2712 |
| PagI | TCATGA | 2 cut(s) | 381, 3285 |
| PceI | AGGCCT | 2 cut(s) | 212, 1520 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 1122 |
| PctI | GAATGC | 2 cut(s) | 2099, 3316 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2565, 2614 |
| PfeI | GAWTC | 6 cut(s) | 395, 1417, 2770, 3195, 3629, 3728 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 192, 295, 1275, 3097 |
| PfoI | TCCNGGA | 1 cut(s) | 1294 |
| PinAI | ACCGGT | 1 cut(s) | 3261 |
| PleI | GAGTC | 6 cut(s) | 1354, 2044, 2309, 2971, 3013, 3403 |
| PpsI | GAGTC | 6 cut(s) | 1354, 2044, 2309, 2971, 3013, 3403 |
| Ppu21I | YACGTR | 2 cut(s) | 3254, 3751 |
| PpuMI | RGGWCCY | 1 cut(s) | 1141 |
| PshBI | ATTAAT | 1 cut(s) | 1050 |
| Psp1406I | AACGTT | 1 cut(s) | 2932 |
| Psp5II | RGGWCCY | 1 cut(s) | 1141 |
| PspFI | CCCAGC | 2 cut(s) | 168, 288 |
| PspOMI | GGGCCC | 1 cut(s) | 1153 |
| PspPPI | RGGWCCY | 1 cut(s) | 1141 |
| PspXI | VCTCGAGB | 1 cut(s) | 2712 |
| PstI | CTGCAG | 2 cut(s) | 2845, 3084 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2303 |
| PsuI | RGATCY | 1 cut(s) | 3200 |
| PvuII | CAGCTG | 3 cut(s) | 1275, 2975, 3914 |
| RsaI | GTAC | 6 cut(s) | 1128, 2166, 2198, 3260, 3813, 3901 |
| RsaNI | GTAC | 6 cut(s) | 1127, 2165, 2197, 3259, 3812, 3900 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1463, 3013, 3210, 3311, 3677 |
| SapI | GCTCTTC | 2 cut(s) | 258, 1122 |
| SchI | GAGTC | 6 cut(s) | 1354, 2044, 2309, 2972, 3013, 3403 |
| SduI | GDGCHC | 6 cut(s) | 186, 1157, 2605, 3181, 3603, 3700 |
| SexAI | ACCWGGT | 1 cut(s) | 2223 |
| SfcI | CTRYAG | 4 cut(s) | 2634, 2841, 3080, 3399 |
| Sfr274I | CTCGAG | 2 cut(s) | 858, 2712 |
| SinI | GGWCC | 3 cut(s) | 1141, 1978, 2504 |
| SlaI | CTCGAG | 2 cut(s) | 858, 2712 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1463, 3013, 3210, 3311, 3677 |
| SmlI | CTYRAG | 7 cut(s) | 323, 344, 858, 1614, 2144, 2712, 3157 |
| SmoI | CTYRAG | 7 cut(s) | 323, 344, 858, 1614, 2144, 2712, 3157 |
| SphI | GCATGC | 1 cut(s) | 1189 |
| SseBI | AGGCCT | 2 cut(s) | 212, 1520 |
| SsiI | CCGC | 5 cut(s) | 754, 1303, 1306, 3034, 3655 |
| SspI | AATATT | 3 cut(s) | 226, 420, 1036 |
| StuI | AGGCCT | 2 cut(s) | 212, 1520 |
| StyI | CCWWGG | 5 cut(s) | 586, 2958, 2984, 3190, 3667 |
| TaaI | ACNGT | 6 cut(s) | 90, 646, 762, 1949, 2173, 3073 |
| TaiI | ACGT | 6 cut(s) | 1585, 1920, 2935, 3256, 3740, 3753 |
| TaqI | TCGA | 7 cut(s) | 459, 859, 2254, 2713, 2916, 3067, 3930 |
| TaqII | GACCGA | 1 cut(s) | 3305 |
| TatI | WGTACW | 2 cut(s) | 1126, 3811 |
| TauI | GCSGC | 2 cut(s) | 1308, 3658 |
| TfiI | GAWTC | 6 cut(s) | 395, 1417, 2770, 3195, 3629, 3728 |
| TscAI | CASTG | 7 cut(s) | 138, 300, 438, 1797, 3102, 3530, 3603 |
| TseFI | GTSAC | 2 cut(s) | 842, 3041 |
| Tsp45I | GTSAC | 2 cut(s) | 842, 3041 |
| TspRI | CASTG | 7 cut(s) | 138, 300, 438, 1797, 3102, 3530, 3603 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 192, 295, 1275, 3097 |
| Vha464I | CTTAAG | 2 cut(s) | 323, 344 |
| VneI | GTGCAC | 1 cut(s) | 3696 |
| VpaK11BI | GGWCC | 3 cut(s) | 1141, 1978, 2504 |
| VspI | ATTAAT | 1 cut(s) | 1050 |
| XapI | RAATTY | 7 cut(s) | 699, 793, 2479, 2718, 3219, 3240, 3683 |
| XceI | RCATGY | 6 cut(s) | 1189, 1501, 1995, 2361, 2673, 3339 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1598, 3877 |
| XhoI | CTCGAG | 2 cut(s) | 858, 2712 |
| XmiI | GTMKAC | 2 cut(s) | 579, 2313 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2565, 2614 |
| Zsp2I | ATGCAT | 4 cut(s) | 499, 1187, 2101, 3318 |