Mediator of RNA polymerase II transcription subunit 33A-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23590 |
| fragaria_vesca | FvH4_4g14380 FvH4_4g14390 |
| malus_domestica | MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1 |
| prunus_persica | Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1 |
| pyrus_communis | pycom13g15720 pycom16g15330 |
| rosa_chinensis | RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541 |
| rosa_laevigata | RLG00000007855 RLG00000007856 |
| rosa_multiflora | Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00361790 Rroxscaffold_5G00361800 |
| rosa_rugosa | Rorug04G0154000 Rorug04G0154100.1 |
| rosa_samantha | Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000 |
| rosa_wichuraiana | Rw4G018240 Rw4G018250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3212 |
| AccB1I | GGYRCC | 1 cut(s) | 3833 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 192, 295, 3259 |
| AccI | GTMKAC | 1 cut(s) | 2475 |
| AciI | CCGC | 4 cut(s) | 754, 1312, 1315, 3817 |
| AclI | AACGTT | 2 cut(s) | 2079, 3094 |
| AclWI | GGATC | 5 cut(s) | 62, 1759, 2421, 3357, 3370 |
| AcoI | YGGCCR | 2 cut(s) | 1571, 3349 |
| AcsI | RAATTY | 7 cut(s) | 699, 793, 2641, 2880, 3381, 3402, 3845 |
| AcuI | CTGAAG | 2 cut(s) | 2297, 2886 |
| AcyI | GRCGYC | 1 cut(s) | 3602 |
| AfaI | GTAC | 6 cut(s) | 1131, 2328, 2360, 3422, 3975, 4063 |
| AflII | CTTAAG | 2 cut(s) | 323, 344 |
| AflIII | ACRYGT | 3 cut(s) | 872, 3415, 3912 |
| AgeI | ACCGGT | 1 cut(s) | 3423 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 268, 300, 2641, 2673 |
| Alw21I | GWGCWC | 6 cut(s) | 110, 2767, 3343, 3510, 3765, 3862 |
| Alw26I | GTCTC | 8 cut(s) | 322, 354, 861, 1333, 2016, 2784, 3132, 3982 |
| Alw44I | GTGCAC | 1 cut(s) | 3858 |
| AlwI | GGATC | 5 cut(s) | 62, 1759, 2421, 3357, 3370 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2465 |
| Ama87I | CYCGRG | 2 cut(s) | 858, 2874 |
| ApaLI | GTGCAC | 1 cut(s) | 3858 |
| ApoI | RAATTY | 7 cut(s) | 699, 793, 2641, 2880, 3381, 3402, 3845 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4074, 4106 |
| AseI | ATTAAT | 1 cut(s) | 1053 |
| AsiGI | ACCGGT | 1 cut(s) | 3423 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2727 |
| AspLEI | GCGC | 1 cut(s) | 1512 |
| AsuHPI | GGTGA | 6 cut(s) | 1361, 1837, 2399, 3378, 3389, 3589 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| AvaI | CYCGRG | 2 cut(s) | 858, 2874 |
| AvaII | GGWCC | 3 cut(s) | 1144, 2140, 2666 |
| BaeGI | GKGCMC | 2 cut(s) | 186, 3862 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2342, 2375, 3404, 3437 |
| BalI | TGGCCA | 2 cut(s) | 1573, 3351 |
| BamHI | GGATCC | 1 cut(s) | 3362 |
| BanI | GGYRCC | 1 cut(s) | 3833 |
| BanII | GRGCYC | 1 cut(s) | 110 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2644, 2676 |
| BauI | CACGAG | 1 cut(s) | 2784 |
| BbsI | GAAGAC | 5 cut(s) | 419, 2685, 2779, 3208, 3436 |
| Bbv12I | GWGCWC | 6 cut(s) | 110, 2767, 3343, 3510, 3765, 3862 |
| BccI | CCATC | 8 cut(s) | 543, 995, 1283, 1496, 2574, 3192, 3476, 3860 |
| BceAI | ACGGC | 1 cut(s) | 3830 |
| BclI | TGATCA | 3 cut(s) | 378, 1905, 3648 |
| BcoDI | GTCTC | 8 cut(s) | 322, 354, 861, 1333, 2016, 2784, 3132, 3982 |
| BfaI | CTAG | 9 cut(s) | 140, 948, 1172, 2720, 2969, 2994, 3041, 3584, 3962 |
| BfmI | CTRYAG | 4 cut(s) | 2796, 3003, 3242, 3561 |
| BfrI | CTTAAG | 2 cut(s) | 323, 344 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1403 |
| BlpI | GCTNAGC | 1 cut(s) | 1711 |
| Bme18I | GGWCC | 3 cut(s) | 1144, 2140, 2666 |
| BmeT110I | CYCGRG | 2 cut(s) | 858, 2874 |
| BmrI | ACTGGG | 1 cut(s) | 2913 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| BmuI | ACTGGG | 1 cut(s) | 2913 |
| BpiI | GAAGAC | 5 cut(s) | 419, 2685, 2779, 3208, 3436 |
| BpmI | CTGGAG | 6 cut(s) | 465, 795, 1315, 1653, 2305, 3003 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1805 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1711 |
| BpuEI | CTTGAG | 5 cut(s) | 94, 124, 1608, 2327, 3304 |
| BsaAI | YACGTR | 2 cut(s) | 3416, 3913 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1005, 1742, 3361 |
| BsaHI | GRCGYC | 1 cut(s) | 3602 |
| BsaJI | CCNNGG | 6 cut(s) | 531, 586, 3120, 3146, 3352, 3829 |
| BsaWI | WCCGGW | 2 cut(s) | 2017, 3423 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 438, 468, 793, 823, 1651, 1681, 3001, 3031 |
| Bse118I | RCCGGY | 1 cut(s) | 3423 |
| Bse3DI | GCAATG | 5 cut(s) | 946, 1002, 1533, 3331, 3573 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1005, 1742, 3361 |
| BseDI | CCNNGG | 6 cut(s) | 531, 586, 3120, 3146, 3352, 3829 |
| BseGI | GGATG | 6 cut(s) | 640, 1006, 2296, 2339, 3963, 3976 |
| BseJI | GATNNNNATC | 3 cut(s) | 1005, 1742, 3361 |
| BseMI | GCAATG | 5 cut(s) | 946, 1002, 1533, 3331, 3573 |
| BseMII | CTCAG | 7 cut(s) | 144, 365, 2346, 3115, 3587, 3684, 3983 |
| BseRI | GAGGAG | 8 cut(s) | 622, 1247, 1250, 1362, 1365, 2004, 2292, 2772 |
| BseSI | GKGCMC | 2 cut(s) | 186, 3862 |
| BseYI | CCCAGC | 2 cut(s) | 168, 288 |
| BsgI | GTGCAG | 3 cut(s) | 714, 3928, 4092 |
| BshNI | GGYRCC | 1 cut(s) | 3833 |
| BshTI | ACCGGT | 1 cut(s) | 3423 |
| BsiHKAI | GWGCWC | 6 cut(s) | 110, 2767, 3343, 3510, 3765, 3862 |
| BsiHKCI | CYCGRG | 2 cut(s) | 858, 2874 |
| BsiSI | CCGG | 3 cut(s) | 2018, 2924, 3424 |
| BslFI | GGGAC | 3 cut(s) | 1157, 2126, 3022 |
| BsmAI | GTCTC | 8 cut(s) | 322, 354, 861, 1333, 2016, 2784, 3132, 3982 |
| BsmFI | GGGAC | 3 cut(s) | 1157, 2126, 3022 |
| BsmI | GAATGC | 3 cut(s) | 2261, 3310, 3478 |
| BsoBI | CYCGRG | 2 cut(s) | 858, 2874 |
| Bsp1286I | GDGCHC | 7 cut(s) | 110, 186, 2767, 3343, 3510, 3765, 3862 |
| Bsp1407I | TGTACA | 2 cut(s) | 1129, 3973 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1711 |
| Bsp19I | CCATGG | 3 cut(s) | 586, 3146, 3352 |
| BspACI | CCGC | 4 cut(s) | 754, 1312, 1315, 3817 |
| BspCNI | CTCAG | 7 cut(s) | 143, 364, 2347, 3114, 3586, 3685, 3984 |
| BspHI | TCATGA | 2 cut(s) | 381, 3447 |
| BspMAI | CTGCAG | 2 cut(s) | 3007, 3246 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BspPI | GGATC | 5 cut(s) | 62, 1759, 2421, 3357, 3370 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 1125 |
| BspT107I | GGYRCC | 1 cut(s) | 3833 |
| BspTI | CTTAAG | 2 cut(s) | 323, 344 |
| BsrDI | GCAATG | 5 cut(s) | 946, 1002, 1533, 3331, 3573 |
| BsrFI | RCCGGY | 1 cut(s) | 3423 |
| BsrGI | TGTACA | 2 cut(s) | 1129, 3973 |
| BssAI | RCCGGY | 1 cut(s) | 3423 |
| BssECI | CCNNGG | 6 cut(s) | 531, 586, 3120, 3146, 3352, 3829 |
| BssNI | GRCGYC | 1 cut(s) | 3602 |
| BssSI | CACGAG | 1 cut(s) | 2784 |
| BssT1I | CCWWGG | 5 cut(s) | 586, 3120, 3146, 3352, 3829 |
| Bst2BI | CACGAG | 1 cut(s) | 2784 |
| Bst4CI | ACNGT | 6 cut(s) | 90, 646, 762, 2335, 2778, 3235 |
| Bst6I | CTCTTC | 5 cut(s) | 258, 599, 1125, 3450, 3980 |
| BstACI | GRCGYC | 1 cut(s) | 3602 |
| BstAFI | CTTAAG | 2 cut(s) | 323, 344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3755 |
| BstAUI | TGTACA | 2 cut(s) | 1129, 3973 |
| BstBAI | YACGTR | 2 cut(s) | 3416, 3913 |
| BstDSI | CCRYGG | 3 cut(s) | 586, 3146, 3352 |
| BstF5I | GGATG | 6 cut(s) | 640, 1006, 2296, 2339, 3963, 3976 |
| BstHHI | GCGC | 1 cut(s) | 1512 |
| BstMAI | GTCTC | 8 cut(s) | 322, 354, 861, 1333, 2016, 2784, 3132, 3982 |
| BstNSI | RCATGY | 7 cut(s) | 876, 1192, 1510, 2157, 2523, 2835, 3501 |
| BstSFI | CTRYAG | 4 cut(s) | 2796, 3003, 3242, 3561 |
| BstSLI | GKGCMC | 2 cut(s) | 186, 3862 |
| BstV2I | GAAGAC | 5 cut(s) | 419, 2685, 2779, 3208, 3436 |
| BstX2I | RGATCY | 1 cut(s) | 3362 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 151, 3374 |
| BstYI | RGATCY | 1 cut(s) | 3362 |
| BtgI | CCRYGG | 3 cut(s) | 586, 3146, 3352 |
| BtgZI | GCGATG | 2 cut(s) | 1433, 3211 |
| BtsCI | GGATG | 6 cut(s) | 640, 1006, 2296, 2339, 3963, 3976 |
| BtsI | GCAGTG | 2 cut(s) | 1799, 3765 |
| BtsIMutI | CAGTG | 8 cut(s) | 138, 300, 438, 1030, 1799, 3264, 3685, 3765 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2465 |
| CciI | TCATGA | 2 cut(s) | 381, 3447 |
| CfoI | GCGC | 1 cut(s) | 1512 |
| Cfr10I | RCCGGY | 1 cut(s) | 3423 |
| CseI | GACGC | 2 cut(s) | 1025, 3591 |
| CsiI | ACCWGGT | 1 cut(s) | 2385 |
| Csp6I | GTAC | 6 cut(s) | 1130, 2327, 2359, 3421, 3974, 4062 |
| CspAI | ACCGGT | 1 cut(s) | 3423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1194, 1229 |
| CviQI | GTAC | 6 cut(s) | 1130, 2327, 2359, 3421, 3974, 4062 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3212 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3212 |
| EaeI | YGGCCR | 2 cut(s) | 1571, 3349 |
| Eam1104I | CTCTTC | 5 cut(s) | 258, 599, 1125, 3450, 3980 |
| EarI | CTCTTC | 5 cut(s) | 258, 599, 1125, 3450, 3980 |
| Ecl136II | GAGCTC | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 5 cut(s) | 586, 3120, 3146, 3352, 3829 |
| Eco147I | AGGCCT | 1 cut(s) | 1529 |
| Eco24I | GRGCYC | 1 cut(s) | 110 |
| Eco32I | GATATC | 5 cut(s) | 1113, 1770, 2716, 2989, 3876 |
| Eco47I | GGWCC | 3 cut(s) | 1144, 2140, 2666 |
| Eco53kI | GAGCTC | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 2 cut(s) | 2297, 2886 |
| Eco88I | CYCGRG | 2 cut(s) | 858, 2874 |
| EcoICRI | GAGCTC | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 4 cut(s) | 211, 1144, 1157, 1794 |
| EcoRI | GAATTC | 3 cut(s) | 699, 2641, 3402 |
| EcoRV | GATATC | 5 cut(s) | 1113, 1770, 2716, 2989, 3876 |
| EcoT14I | CCWWGG | 5 cut(s) | 586, 3120, 3146, 3352, 3829 |
| EcoT22I | ATGCAT | 5 cut(s) | 499, 1190, 1917, 2263, 3480 |
| EcoT38I | GRGCYC | 1 cut(s) | 110 |
| ErhI | CCWWGG | 5 cut(s) | 586, 3120, 3146, 3352, 3829 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2365, 2397 |
| FaqI | GGGAC | 3 cut(s) | 1157, 2126, 3022 |
| FbaI | TGATCA | 3 cut(s) | 378, 1905, 3648 |
| FblI | GTMKAC | 1 cut(s) | 2475 |
| FokI | GGATG | 6 cut(s) | 647, 1013, 2283, 2326, 3970, 3983 |
| FriOI | GRGCYC | 1 cut(s) | 110 |
| FspBI | CTAG | 9 cut(s) | 140, 948, 1172, 2720, 2969, 2994, 3041, 3584, 3962 |
| GlaI | GCGC | 1 cut(s) | 1511 |
| GsaI | CCCAGC | 2 cut(s) | 172, 292 |
| GsuI | CTGGAG | 6 cut(s) | 465, 795, 1315, 1653, 2305, 3003 |
| HapII | CCGG | 3 cut(s) | 2018, 2924, 3424 |
| HgaI | GACGC | 2 cut(s) | 1025, 3591 |
| HhaI | GCGC | 1 cut(s) | 1512 |
| Hin1I | GRCGYC | 1 cut(s) | 3602 |
| Hin6I | GCGC | 1 cut(s) | 1510 |
| HinP1I | GCGC | 1 cut(s) | 1510 |
| HincII | GTYRAC | 5 cut(s) | 39, 1015, 1641, 2107, 3618 |
| HindII | GTYRAC | 5 cut(s) | 39, 1015, 1641, 2107, 3618 |
| HindIII | AAGCTT | 1 cut(s) | 1708 |
| HpaI | GTTAAC | 2 cut(s) | 39, 3618 |
| HpaII | CCGG | 3 cut(s) | 2018, 2924, 3424 |
| HphI | GGTGA | 6 cut(s) | 1361, 1837, 2399, 3378, 3389, 3589 |
| HpyAV | CCTTC | 8 cut(s) | 506, 686, 1070, 1148, 1471, 2282, 3675, 3707 |
| HpyCH4III | ACNGT | 6 cut(s) | 90, 646, 762, 2335, 2778, 3235 |
| HpyCH4IV | ACGT | 6 cut(s) | 1591, 2079, 3094, 3415, 3899, 3912 |
| HpySE526I | ACGT | 6 cut(s) | 1591, 2079, 3094, 3415, 3899, 3912 |
| Hsp92I | GRCGYC | 1 cut(s) | 3602 |
| HspAI | GCGC | 1 cut(s) | 1510 |
| KflI | GGGWCCC | 1 cut(s) | 1144 |
| Ksp22I | TGATCA | 3 cut(s) | 378, 1905, 3648 |
| KspAI | GTTAAC | 2 cut(s) | 39, 3618 |
| LguI | GCTCTTC | 2 cut(s) | 258, 1125 |
| LmnI | GCTCC | 6 cut(s) | 136, 1978, 2071, 3338, 3513, 3770 |
| MabI | ACCWGGT | 1 cut(s) | 2385 |
| MaeI | CTAG | 9 cut(s) | 140, 948, 1172, 2720, 2969, 2994, 3041, 3584, 3962 |
| MaeII | ACGT | 6 cut(s) | 1591, 2079, 3094, 3415, 3899, 3912 |
| MfeI | CAATTG | 4 cut(s) | 474, 485, 2003, 3162 |
| MflI | RGATCY | 1 cut(s) | 3362 |
| MhlI | GDGCHC | 7 cut(s) | 110, 186, 2767, 3343, 3510, 3765, 3862 |
| MlsI | TGGCCA | 2 cut(s) | 1573, 3351 |
| MluNI | TGGCCA | 2 cut(s) | 1573, 3351 |
| MlyI | GAGTC | 8 cut(s) | 389, 1363, 1420, 2206, 2471, 3134, 3175, 3565 |
| MmeI | TCCRAC | 4 cut(s) | 123, 1793, 2071, 3338 |
| Mox20I | TGGCCA | 2 cut(s) | 1573, 3351 |
| Mph1103I | ATGCAT | 5 cut(s) | 499, 1190, 1917, 2263, 3480 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2727 |
| MscI | TGGCCA | 2 cut(s) | 1573, 3351 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1472, 3175, 3372, 3473, 3839 |
| Msp20I | TGGCCA | 2 cut(s) | 1573, 3351 |
| MspA1I | CMGCKG | 4 cut(s) | 754, 1284, 3137, 4076 |
| MspCI | CTTAAG | 2 cut(s) | 323, 344 |
| MspI | CCGG | 3 cut(s) | 2018, 2924, 3424 |
| MunI | CAATTG | 4 cut(s) | 474, 485, 2003, 3162 |
| Mva1269I | GAATGC | 3 cut(s) | 2261, 3310, 3478 |
| NcoI | CCATGG | 3 cut(s) | 586, 3146, 3352 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NmuCI | GTSAC | 2 cut(s) | 842, 3203 |
| NsiI | ATGCAT | 5 cut(s) | 499, 1190, 1917, 2263, 3480 |
| NspI | RCATGY | 7 cut(s) | 876, 1192, 1510, 2157, 2523, 2835, 3501 |
| PaeI | GCATGC | 1 cut(s) | 1192 |
| PaeR7I | CTCGAG | 2 cut(s) | 858, 2874 |
| PagI | TCATGA | 2 cut(s) | 381, 3447 |
| PceI | AGGCCT | 1 cut(s) | 1529 |
| PciI | ACATGT | 1 cut(s) | 872 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 1125 |
| PctI | GAATGC | 3 cut(s) | 2261, 3310, 3478 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2727 |
| PfeI | GAWTC | 5 cut(s) | 1934, 2932, 3357, 3791, 3890 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 192, 295, 3259 |
| PfoI | TCCNGGA | 2 cut(s) | 1303, 2207 |
| PinAI | ACCGGT | 1 cut(s) | 3423 |
| PleI | GAGTC | 8 cut(s) | 389, 1363, 1420, 2206, 2471, 3133, 3175, 3565 |
| PpsI | GAGTC | 8 cut(s) | 389, 1363, 1420, 2206, 2471, 3133, 3175, 3565 |
| Ppu21I | YACGTR | 2 cut(s) | 3416, 3913 |
| PpuMI | RGGWCCY | 1 cut(s) | 1144 |
| PscI | ACATGT | 1 cut(s) | 872 |
| PshBI | ATTAAT | 1 cut(s) | 1053 |
| Psp124BI | GAGCTC | 1 cut(s) | 110 |
| Psp1406I | AACGTT | 2 cut(s) | 2079, 3094 |
| Psp5II | RGGWCCY | 1 cut(s) | 1144 |
| PspFI | CCCAGC | 2 cut(s) | 168, 288 |
| PspPPI | RGGWCCY | 1 cut(s) | 1144 |
| PspXI | VCTCGAGB | 1 cut(s) | 2874 |
| PstI | CTGCAG | 2 cut(s) | 3007, 3246 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2465 |
| PsuI | RGATCY | 1 cut(s) | 3362 |
| PvuII | CAGCTG | 3 cut(s) | 1284, 3137, 4076 |
| RsaI | GTAC | 6 cut(s) | 1131, 2328, 2360, 3422, 3975, 4063 |
| RsaNI | GTAC | 6 cut(s) | 1130, 2327, 2359, 3421, 3974, 4062 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1472, 3175, 3372, 3473, 3839 |
| SacI | GAGCTC | 1 cut(s) | 110 |
| SapI | GCTCTTC | 2 cut(s) | 258, 1125 |
| SchI | GAGTC | 8 cut(s) | 389, 1363, 1420, 2206, 2471, 3134, 3175, 3565 |
| SduI | GDGCHC | 7 cut(s) | 110, 186, 2767, 3343, 3510, 3765, 3862 |
| SexAI | ACCWGGT | 1 cut(s) | 2385 |
| SfcI | CTRYAG | 4 cut(s) | 2796, 3003, 3242, 3561 |
| Sfr274I | CTCGAG | 2 cut(s) | 858, 2874 |
| SinI | GGWCC | 3 cut(s) | 1144, 2140, 2666 |
| SlaI | CTCGAG | 2 cut(s) | 858, 2874 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1472, 3175, 3372, 3473, 3839 |
| SmlI | CTYRAG | 9 cut(s) | 103, 109, 323, 344, 858, 1623, 2306, 2874, 3319 |
| SmoI | CTYRAG | 9 cut(s) | 103, 109, 323, 344, 858, 1623, 2306, 2874, 3319 |
| SphI | GCATGC | 1 cut(s) | 1192 |
| SseBI | AGGCCT | 1 cut(s) | 1529 |
| SsiI | CCGC | 4 cut(s) | 754, 1312, 1315, 3817 |
| SspI | AATATT | 3 cut(s) | 226, 420, 1039 |
| SspMI | CTAG | 9 cut(s) | 140, 948, 1172, 2720, 2969, 2994, 3041, 3584, 3962 |
| SstI | GAGCTC | 1 cut(s) | 110 |
| StuI | AGGCCT | 1 cut(s) | 1529 |
| StyI | CCWWGG | 5 cut(s) | 586, 3120, 3146, 3352, 3829 |
| TaaI | ACNGT | 6 cut(s) | 90, 646, 762, 2335, 2778, 3235 |
| TaiI | ACGT | 6 cut(s) | 1594, 2082, 3097, 3418, 3902, 3915 |
| TaqI | TCGA | 8 cut(s) | 280, 459, 859, 1722, 2416, 2875, 3229, 4092 |
| TaqII | GACCGA | 1 cut(s) | 3467 |
| TatI | WGTACW | 2 cut(s) | 1129, 3973 |
| TauI | GCSGC | 2 cut(s) | 1317, 3820 |
| TfiI | GAWTC | 5 cut(s) | 1934, 2932, 3357, 3791, 3890 |
| TscAI | CASTG | 8 cut(s) | 138, 300, 438, 1030, 1806, 3264, 3692, 3765 |
| TseFI | GTSAC | 2 cut(s) | 842, 3203 |
| Tsp45I | GTSAC | 2 cut(s) | 842, 3203 |
| TspRI | CASTG | 8 cut(s) | 138, 300, 438, 1030, 1806, 3264, 3692, 3765 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 192, 295, 3259 |
| Vha464I | CTTAAG | 2 cut(s) | 323, 344 |
| VneI | GTGCAC | 1 cut(s) | 3858 |
| VpaK11BI | GGWCC | 3 cut(s) | 1144, 2140, 2666 |
| VspI | ATTAAT | 1 cut(s) | 1053 |
| XapI | RAATTY | 7 cut(s) | 699, 793, 2641, 2880, 3381, 3402, 3845 |
| XceI | RCATGY | 7 cut(s) | 876, 1192, 1510, 2157, 2523, 2835, 3501 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1607, 4039 |
| XhoI | CTCGAG | 2 cut(s) | 858, 2874 |
| XmiI | GTMKAC | 1 cut(s) | 2475 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2727 |
| XspI | CTAG | 9 cut(s) | 140, 948, 1172, 2720, 2969, 2994, 3041, 3584, 3962 |
| Zsp2I | ATGCAT | 5 cut(s) | 499, 1190, 1917, 2263, 3480 |