Mediator of RNA polymerase II transcription subunit 33A-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23590 |
| fragaria_vesca | FvH4_4g14380 FvH4_4g14390 |
| malus_domestica | MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1 |
| prunus_persica | Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1 |
| pyrus_communis | pycom13g15720 pycom16g15330 |
| rosa_chinensis | RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541 |
| rosa_laevigata | RLG00000007855 RLG00000007856 |
| rosa_multiflora | Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00361790 Rroxscaffold_5G00361800 |
| rosa_rugosa | Rorug04G0154000 Rorug04G0154100.1 |
| rosa_samantha | Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000 |
| rosa_wichuraiana | Rw4G018240 Rw4G018250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 868 |
| Acc36I | ACCTGC | 4 cut(s) | 32, 868, 1033, 3005 |
| AccB1I | GGYRCC | 1 cut(s) | 280 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 243, 622 |
| AccI | GTMKAC | 1 cut(s) | 1287 |
| AccII | CGCG | 2 cut(s) | 1350, 2430 |
| AciI | CCGC | 6 cut(s) | 1004, 1691, 2428, 2430, 3495, 3706 |
| AcoI | YGGCCR | 7 cut(s) | 45, 192, 602, 1604, 3226, 3417, 3760 |
| AcsI | RAATTY | 6 cut(s) | 826, 910, 1384, 2806, 3551, 3737 |
| AcuI | CTGAAG | 5 cut(s) | 870, 2177, 2760, 2865, 3431 |
| AcyI | GRCGYC | 1 cut(s) | 3709 |
| AdeI | CACNNNGTG | 1 cut(s) | 3361 |
| AfaI | GTAC | 9 cut(s) | 115, 234, 930, 1017, 1507, 2073, 2250, 2381, 3109 |
| AfeI | AGCGCT | 1 cut(s) | 2872 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 243, 622, 1246, 1837, 2665, 3256, 3395, 3529, 3829 |
| AflII | CTTAAG | 1 cut(s) | 374 |
| AflIII | ACRYGT | 3 cut(s) | 198, 334, 2200 |
| AhlI | ACTAGT | 2 cut(s) | 857, 3478 |
| AjiI | CACGTC | 1 cut(s) | 335 |
| AjnI | CCWGG | 8 cut(s) | 314, 1606, 1660, 2194, 2286, 2375, 2747, 3692 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3031, 3063 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2424, 2456 |
| Alw21I | GWGCWC | 5 cut(s) | 161, 372, 1282, 3220, 3754 |
| Alw44I | GTGCAC | 1 cut(s) | 1278 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 69, 1317, 1378 |
| Ama87I | CYCGRG | 2 cut(s) | 1019, 3468 |
| Aor51HI | AGCGCT | 1 cut(s) | 2872 |
| ApaLI | GTGCAC | 1 cut(s) | 1278 |
| ApoI | RAATTY | 6 cut(s) | 826, 910, 1384, 2806, 3551, 3737 |
| AseI | ATTAAT | 1 cut(s) | 408 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2238 |
| AspA2I | CCTAGG | 1 cut(s) | 3523 |
| AspLEI | GCGC | 3 cut(s) | 1545, 1735, 2873 |
| AspS9I | GGNCC | 5 cut(s) | 413, 1090, 2790, 3027, 3057 |
| AsuC2I | CCSGG | 2 cut(s) | 2659, 3275 |
| AsuHPI | GGTGA | 3 cut(s) | 1193, 1228, 2438 |
| AvaI | CYCGRG | 2 cut(s) | 1019, 3468 |
| AvaII | GGWCC | 2 cut(s) | 1090, 3057 |
| AvrII | CCTAGG | 1 cut(s) | 3523 |
| AxyI | CCTNAGG | 1 cut(s) | 864 |
| BaeGI | GKGCMC | 2 cut(s) | 285, 1282 |
| BalI | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| BamHI | GGATCC | 2 cut(s) | 1177, 3698 |
| BanI | GGYRCC | 1 cut(s) | 280 |
| BanII | GRGCYC | 3 cut(s) | 161, 372, 3220 |
| BbsI | GAAGAC | 5 cut(s) | 2503, 3085, 3106, 3313, 3884 |
| Bbv12I | GWGCWC | 5 cut(s) | 161, 372, 1282, 3220, 3754 |
| BbvCI | CCTCAGC | 1 cut(s) | 3896 |
| BceAI | ACGGC | 2 cut(s) | 957, 2893 |
| BciT130I | CCWGG | 8 cut(s) | 316, 1608, 1662, 2196, 2288, 2377, 2749, 3694 |
| BciVI | GTATCC | 2 cut(s) | 2640, 3623 |
| BclI | TGATCA | 2 cut(s) | 34, 1083 |
| BcnI | CCSGG | 2 cut(s) | 2659, 3275 |
| BcuI | ACTAGT | 2 cut(s) | 857, 3478 |
| BfaI | CTAG | 7 cut(s) | 597, 858, 1205, 2027, 2264, 3479, 3524 |
| BfmI | CTRYAG | 5 cut(s) | 162, 1425, 2505, 3390, 3969 |
| BfoI | RGCGCY | 1 cut(s) | 2874 |
| BfrI | CTTAAG | 1 cut(s) | 374 |
| BfuAI | ACCTGC | 4 cut(s) | 32, 868, 1033, 3005 |
| BfuI | GTATCC | 2 cut(s) | 2640, 3623 |
| BlnI | CCTAGG | 1 cut(s) | 3523 |
| Bme18I | GGWCC | 2 cut(s) | 1090, 3057 |
| BmeT110I | CYCGRG | 2 cut(s) | 1019, 3468 |
| BmgBI | CACGTC | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 5 cut(s) | 413, 1090, 2790, 3027, 3057 |
| BmiI | GGNNCC | 8 cut(s) | 282, 1179, 1404, 1825, 2019, 2434, 3059, 3700 |
| BmrI | ACTGGG | 2 cut(s) | 2070, 2682 |
| BmuI | ACTGGG | 2 cut(s) | 2070, 2682 |
| BpiI | GAAGAC | 5 cut(s) | 2503, 3085, 3106, 3313, 3884 |
| BpmI | CTGGAG | 5 cut(s) | 298, 1339, 1772, 3537, 3571 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1531, 3896 |
| BpuEI | CTTGAG | 7 cut(s) | 87, 275, 692, 1205, 1348, 1638, 2851 |
| BpuMI | CCSGG | 2 cut(s) | 2659, 3275 |
| Bsa29I | ATCGAT | 1 cut(s) | 1983 |
| BsaAI | YACGTR | 2 cut(s) | 3107, 3634 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2045 |
| BsaHI | GRCGYC | 1 cut(s) | 3709 |
| BsaI | GGTCTC | 3 cut(s) | 211, 2869, 3779 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3654, 3684 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 243, 622, 1246, 1837, 2665, 3256, 3395, 3529, 3829 |
| Bse1I | ACTGG | 5 cut(s) | 1081, 1322, 2076, 2670, 2677 |
| Bse21I | CCTNAGG | 1 cut(s) | 864 |
| Bse3DI | GCAATG | 2 cut(s) | 1458, 3006 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2045 |
| BseBI | CCWGG | 8 cut(s) | 316, 1608, 1662, 2196, 2288, 2377, 2749, 3694 |
| BseCI | ATCGAT | 1 cut(s) | 1983 |
| BseGI | GGATG | 8 cut(s) | 1030, 1628, 1812, 2267, 3404, 3689, 3855, 3868 |
| BseJI | GATNNNNATC | 1 cut(s) | 2045 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 243, 622, 1246, 1837, 2665, 3256, 3395, 3529, 3829 |
| BseMI | GCAATG | 2 cut(s) | 1458, 3006 |
| BseMII | CTCAG | 8 cut(s) | 146, 855, 951, 1479, 1545, 1797, 2748, 3887 |
| BseNI | ACTGG | 5 cut(s) | 1081, 1322, 2076, 2670, 2677 |
| BseRI | GAGGAG | 4 cut(s) | 1881, 3180, 3926, 3929 |
| BseSI | GKGCMC | 2 cut(s) | 285, 1282 |
| BseYI | CCCAGC | 5 cut(s) | 494, 1378, 1967, 2792, 3934 |
| BsgI | GTGCAG | 3 cut(s) | 359, 2319, 3984 |
| Bsh1236I | CGCG | 2 cut(s) | 1350, 2430 |
| Bsh1285I | CGRYCG | 1 cut(s) | 528 |
| BshNI | GGYRCC | 1 cut(s) | 280 |
| BshVI | ATCGAT | 1 cut(s) | 1983 |
| BsiEI | CGRYCG | 1 cut(s) | 528 |
| BsiHKAI | GWGCWC | 5 cut(s) | 161, 372, 1282, 3220, 3754 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1019, 3468 |
| BsiSI | CCGG | 2 cut(s) | 2659, 3275 |
| BslFI | GGGAC | 6 cut(s) | 86, 511, 978, 1174, 1483, 2116 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 243, 622, 1246, 1837, 2665, 3256, 3395, 3529, 3829 |
| BsmFI | GGGAC | 6 cut(s) | 86, 511, 978, 1174, 1483, 2116 |
| Bso31I | GGTCTC | 3 cut(s) | 211, 2869, 3779 |
| BsoBI | CYCGRG | 2 cut(s) | 1019, 3468 |
| Bsp1286I | GDGCHC | 6 cut(s) | 161, 285, 372, 1282, 3220, 3754 |
| Bsp19I | CCATGG | 4 cut(s) | 183, 3023, 3229, 3250 |
| Bsp68I | TCGCGA | 1 cut(s) | 1350 |
| BspACI | CCGC | 6 cut(s) | 1004, 1691, 2428, 2430, 3495, 3706 |
| BspCNI | CTCAG | 8 cut(s) | 147, 856, 952, 1478, 1544, 1796, 2747, 3888 |
| BspDI | ATCGAT | 1 cut(s) | 1983 |
| BspFNI | CGCG | 2 cut(s) | 1350, 2430 |
| BspHI | TCATGA | 1 cut(s) | 3816 |
| BspLI | GGNNCC | 8 cut(s) | 282, 1179, 1404, 1825, 2019, 2434, 3059, 3700 |
| BspMAI | CTGCAG | 4 cut(s) | 166, 1429, 2509, 3973 |
| BspMI | ACCTGC | 4 cut(s) | 32, 868, 1033, 3005 |
| BspQI | GCTCTTC | 1 cut(s) | 3225 |
| BspT107I | GGYRCC | 1 cut(s) | 280 |
| BspTI | CTTAAG | 1 cut(s) | 374 |
| BspTNI | GGTCTC | 3 cut(s) | 211, 2869, 3779 |
| BsrDI | GCAATG | 2 cut(s) | 1458, 3006 |
| BsrI | ACTGG | 5 cut(s) | 1081, 1322, 2076, 2670, 2677 |
| BssNI | GRCGYC | 1 cut(s) | 3709 |
| BssT1I | CCWWGG | 7 cut(s) | 93, 183, 264, 3023, 3229, 3250, 3523 |
| Bst2UI | CCWGG | 8 cut(s) | 316, 1608, 1662, 2196, 2288, 2377, 2749, 3694 |
| Bst4CI | ACNGT | 5 cut(s) | 529, 1109, 2212, 2502, 3112 |
| Bst6I | CTCTTC | 2 cut(s) | 650, 3225 |
| BstACI | GRCGYC | 1 cut(s) | 3709 |
| BstAFI | CTTAAG | 1 cut(s) | 374 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 727, 2318, 3647 |
| BstBAI | YACGTR | 2 cut(s) | 3107, 3634 |
| BstDSI | CCRYGG | 6 cut(s) | 183, 973, 2428, 3023, 3229, 3250 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1835 |
| BstF5I | GGATG | 8 cut(s) | 1030, 1628, 1812, 2267, 3404, 3689, 3855, 3868 |
| BstFNI | CGCG | 2 cut(s) | 1350, 2430 |
| BstH2I | RGCGCY | 1 cut(s) | 2874 |
| BstHHI | GCGC | 3 cut(s) | 1545, 1735, 2873 |
| BstMCI | CGRYCG | 1 cut(s) | 528 |
| BstNI | CCWGG | 8 cut(s) | 316, 1608, 1662, 2196, 2288, 2377, 2749, 3694 |
| BstSFI | CTRYAG | 5 cut(s) | 162, 1425, 2505, 3390, 3969 |
| BstSLI | GKGCMC | 2 cut(s) | 285, 1282 |
| BstUI | CGCG | 2 cut(s) | 1350, 2430 |
| BstV2I | GAAGAC | 5 cut(s) | 2503, 3085, 3106, 3313, 3884 |
| BstX2I | RGATCY | 4 cut(s) | 398, 1177, 3239, 3698 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 190, 202, 410, 3236 |
| BstYI | RGATCY | 4 cut(s) | 398, 1177, 3239, 3698 |
| Bsu15I | ATCGAT | 1 cut(s) | 1983 |
| Bsu36I | CCTNAGG | 1 cut(s) | 864 |
| BsuI | GTATCC | 2 cut(s) | 2640, 3623 |
| BsuTUI | ATCGAT | 1 cut(s) | 1983 |
| BtgI | CCRYGG | 6 cut(s) | 183, 973, 2428, 3023, 3229, 3250 |
| BtgZI | GCGATG | 1 cut(s) | 1365 |
| BtrI | CACGTC | 1 cut(s) | 335 |
| BtsCI | GGATG | 8 cut(s) | 1030, 1628, 1812, 2267, 3404, 3689, 3855, 3868 |
| BtsI | GCAGTG | 4 cut(s) | 1860, 2850, 3162, 3908 |
| BtsIMutI | CAGTG | 7 cut(s) | 1074, 1315, 1860, 2083, 2850, 3162, 3908 |
| BtuMI | TCGCGA | 1 cut(s) | 1350 |
| BveI | ACCTGC | 4 cut(s) | 32, 868, 1033, 3005 |
| CaiI | CAGNNNCTG | 3 cut(s) | 69, 1317, 1378 |
| CciI | TCATGA | 1 cut(s) | 3816 |
| CfoI | GCGC | 3 cut(s) | 1545, 1735, 2873 |
| Cfr13I | GGNCC | 5 cut(s) | 413, 1090, 2790, 3027, 3057 |
| Cfr42I | CCGCGG | 1 cut(s) | 2431 |
| ClaI | ATCGAT | 1 cut(s) | 1983 |
| CseI | GACGC | 2 cut(s) | 55, 3698 |
| Csp6I | GTAC | 9 cut(s) | 114, 233, 929, 1016, 1506, 2072, 2249, 2380, 3108 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2802, 2837, 2839, 2874 |
| CviQI | GTAC | 9 cut(s) | 114, 233, 929, 1016, 1506, 2072, 2249, 2380, 3108 |
| DraI | TTTAAA | 1 cut(s) | 3547 |
| DraIII | CACNNNGTG | 1 cut(s) | 3361 |
| EaeI | YGGCCR | 7 cut(s) | 45, 192, 602, 1604, 3226, 3417, 3760 |
| Eam1104I | CTCTTC | 2 cut(s) | 650, 3225 |
| EarI | CTCTTC | 2 cut(s) | 650, 3225 |
| Ecl136II | GAGCTC | 3 cut(s) | 159, 370, 3218 |
| Eco130I | CCWWGG | 7 cut(s) | 93, 183, 264, 3023, 3229, 3250, 3523 |
| Eco147I | AGGCCT | 2 cut(s) | 263, 3522 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 372, 3220 |
| Eco31I | GGTCTC | 3 cut(s) | 211, 2869, 3779 |
| Eco32I | GATATC | 4 cut(s) | 438, 1800, 1974, 3768 |
| Eco47I | GGWCC | 2 cut(s) | 1090, 3057 |
| Eco47III | AGCGCT | 1 cut(s) | 2872 |
| Eco53kI | GAGCTC | 3 cut(s) | 159, 370, 3218 |
| Eco57I | CTGAAG | 5 cut(s) | 870, 2177, 2760, 2865, 3431 |
| Eco81I | CCTNAGG | 1 cut(s) | 864 |
| Eco88I | CYCGRG | 2 cut(s) | 1019, 3468 |
| EcoICRI | GAGCTC | 3 cut(s) | 159, 370, 3218 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1835 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1090 |
| EcoRII | CCWGG | 8 cut(s) | 314, 1606, 1660, 2194, 2286, 2375, 2747, 3692 |
| EcoRV | GATATC | 4 cut(s) | 438, 1800, 1974, 3768 |
| EcoT14I | CCWWGG | 7 cut(s) | 93, 183, 264, 3023, 3229, 3250, 3523 |
| EcoT22I | ATGCAT | 5 cut(s) | 550, 1223, 1628, 2398, 2402 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 372, 3220 |
| ErhI | CCWWGG | 7 cut(s) | 93, 183, 264, 3023, 3229, 3250, 3523 |
| FaqI | GGGAC | 6 cut(s) | 86, 511, 978, 1174, 1483, 2116 |
| FauI | CCCGC | 1 cut(s) | 2435 |
| FbaI | TGATCA | 2 cut(s) | 34, 1083 |
| FblI | GTMKAC | 1 cut(s) | 1287 |
| FokI | GGATG | 8 cut(s) | 1037, 1635, 1799, 2254, 3411, 3676, 3862, 3875 |
| FriOI | GRGCYC | 3 cut(s) | 161, 372, 3220 |
| FspBI | CTAG | 7 cut(s) | 597, 858, 1205, 2027, 2264, 3479, 3524 |
| GlaI | GCGC | 3 cut(s) | 1544, 1734, 2872 |
| GsaI | CCCAGC | 5 cut(s) | 498, 1382, 1971, 2796, 3938 |
| GsuI | CTGGAG | 5 cut(s) | 298, 1339, 1772, 3537, 3571 |
| HaeII | RGCGCY | 1 cut(s) | 2874 |
| HapII | CCGG | 2 cut(s) | 2659, 3275 |
| HgaI | GACGC | 2 cut(s) | 55, 3698 |
| HhaI | GCGC | 3 cut(s) | 1545, 1735, 2873 |
| Hin1I | GRCGYC | 1 cut(s) | 3709 |
| Hin6I | GCGC | 3 cut(s) | 1543, 1733, 2871 |
| HinP1I | GCGC | 3 cut(s) | 1543, 1733, 2871 |
| HincII | GTYRAC | 1 cut(s) | 1707 |
| HindII | GTYRAC | 1 cut(s) | 1707 |
| HindIII | AAGCTT | 1 cut(s) | 1366 |
| HpaI | GTTAAC | 1 cut(s) | 1707 |
| HpaII | CCGG | 2 cut(s) | 2659, 3275 |
| HphI | GGTGA | 3 cut(s) | 1193, 1228, 2438 |
| Hpy166II | GTNNAC | 7 cut(s) | 1280, 1288, 1707, 2072, 2284, 3580, 3682 |
| Hpy8I | GTNNAC | 7 cut(s) | 1280, 1288, 1707, 2072, 2284, 3580, 3682 |
| HpyAV | CCTTC | 5 cut(s) | 189, 253, 1103, 2249, 3570 |
| HpyCH4III | ACNGT | 5 cut(s) | 529, 1109, 2212, 2502, 3112 |
| HpyCH4IV | ACGT | 6 cut(s) | 75, 198, 334, 3106, 3443, 3633 |
| HpySE526I | ACGT | 6 cut(s) | 75, 198, 334, 3106, 3443, 3633 |
| Hsp92I | GRCGYC | 1 cut(s) | 3709 |
| HspAI | GCGC | 3 cut(s) | 1543, 1733, 2871 |
| Ksp22I | TGATCA | 2 cut(s) | 34, 1083 |
| KspAI | GTTAAC | 1 cut(s) | 1707 |
| KspI | CCGCGG | 1 cut(s) | 2431 |
| LguI | GCTCTTC | 1 cut(s) | 3225 |
| MaeI | CTAG | 7 cut(s) | 597, 858, 1205, 2027, 2264, 3479, 3524 |
| MaeII | ACGT | 6 cut(s) | 75, 198, 334, 3106, 3443, 3633 |
| MaeIII | GTNAC | 8 cut(s) | 853, 1036, 1234, 1313, 1333, 2001, 2078, 2743 |
| MfeI | CAATTG | 2 cut(s) | 536, 3039 |
| MflI | RGATCY | 4 cut(s) | 398, 1177, 3239, 3698 |
| MhlI | GDGCHC | 6 cut(s) | 161, 285, 372, 1282, 3220, 3754 |
| MlsI | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| MluNI | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| MlyI | GAGTC | 6 cut(s) | 59, 1196, 1202, 2075, 3460, 3677 |
| MmeI | TCCRAC | 4 cut(s) | 1189, 1823, 3056, 3145 |
| Mox20I | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| Mph1103I | ATGCAT | 5 cut(s) | 550, 1223, 1628, 2398, 2402 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2238 |
| MscI | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2448, 2454, 3129, 3249, 3655 |
| Msp20I | TGGCCA | 6 cut(s) | 194, 604, 1606, 3228, 3419, 3762 |
| MspA1I | CMGCKG | 4 cut(s) | 2430, 2600, 2738, 3968 |
| MspCI | CTTAAG | 1 cut(s) | 374 |
| MspI | CCGG | 2 cut(s) | 2659, 3275 |
| MunI | CAATTG | 2 cut(s) | 536, 3039 |
| MvaI | CCWGG | 8 cut(s) | 316, 1608, 1662, 2196, 2288, 2377, 2749, 3694 |
| MvnI | CGCG | 2 cut(s) | 1350, 2430 |
| NciI | CCSGG | 2 cut(s) | 2659, 3275 |
| NcoI | CCATGG | 4 cut(s) | 183, 3023, 3229, 3250 |
| NlaIV | GGNNCC | 8 cut(s) | 282, 1179, 1404, 1825, 2019, 2434, 3059, 3700 |
| NmeAIII | GCCGAG | 2 cut(s) | 73, 2252 |
| NmuCI | GTSAC | 5 cut(s) | 1234, 1313, 1333, 2001, 2078 |
| NruI | TCGCGA | 1 cut(s) | 1350 |
| NsiI | ATGCAT | 5 cut(s) | 550, 1223, 1628, 2398, 2402 |
| PaeI | GCATGC | 3 cut(s) | 2400, 3037, 3841 |
| PaeR7I | CTCGAG | 1 cut(s) | 1019 |
| PagI | TCATGA | 1 cut(s) | 3816 |
| PaqCI | CACCTGC | 1 cut(s) | 868 |
| PceI | AGGCCT | 2 cut(s) | 263, 3522 |
| PciI | ACATGT | 1 cut(s) | 2200 |
| PciSI | GCTCTTC | 1 cut(s) | 3225 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2238 |
| PflFI | GACNNNGTC | 2 cut(s) | 77, 3317 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 243, 622 |
| PleI | GAGTC | 6 cut(s) | 58, 1195, 1202, 2075, 3460, 3677 |
| PpsI | GAGTC | 6 cut(s) | 58, 1195, 1202, 2075, 3460, 3677 |
| Ppu21I | YACGTR | 2 cut(s) | 3107, 3634 |
| PpuMI | RGGWCCY | 1 cut(s) | 1090 |
| PscI | ACATGT | 1 cut(s) | 2200 |
| PshBI | ATTAAT | 1 cut(s) | 408 |
| Psp124BI | GAGCTC | 3 cut(s) | 161, 372, 3220 |
| Psp5II | RGGWCCY | 1 cut(s) | 1090 |
| Psp6I | CCWGG | 8 cut(s) | 314, 1606, 1660, 2194, 2286, 2375, 2747, 3692 |
| PspFI | CCCAGC | 5 cut(s) | 494, 1378, 1967, 2792, 3934 |
| PspGI | CCWGG | 8 cut(s) | 314, 1606, 1660, 2194, 2286, 2375, 2747, 3692 |
| PspN4I | GGNNCC | 8 cut(s) | 282, 1179, 1404, 1825, 2019, 2434, 3059, 3700 |
| PspPI | GGNCC | 5 cut(s) | 413, 1090, 2790, 3027, 3057 |
| PspPPI | RGGWCCY | 1 cut(s) | 1090 |
| PspXI | VCTCGAGB | 1 cut(s) | 1019 |
| PstI | CTGCAG | 4 cut(s) | 166, 1429, 2509, 3973 |
| PstNI | CAGNNNCTG | 3 cut(s) | 69, 1317, 1378 |
| PsuI | RGATCY | 4 cut(s) | 398, 1177, 3239, 3698 |
| PsyI | GACNNNGTC | 2 cut(s) | 77, 3317 |
| PvuII | CAGCTG | 3 cut(s) | 2600, 2738, 3968 |
| RruI | TCGCGA | 1 cut(s) | 1350 |
| RsaI | GTAC | 9 cut(s) | 115, 234, 930, 1017, 1507, 2073, 2250, 2381, 3109 |
| RsaNI | GTAC | 9 cut(s) | 114, 233, 929, 1016, 1506, 2072, 2249, 2380, 3108 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2448, 2454, 3129, 3249, 3655 |
| SacI | GAGCTC | 3 cut(s) | 161, 372, 3220 |
| SacII | CCGCGG | 1 cut(s) | 2431 |
| SapI | GCTCTTC | 1 cut(s) | 3225 |
| Sau96I | GGNCC | 5 cut(s) | 413, 1090, 2790, 3027, 3057 |
| SchI | GAGTC | 6 cut(s) | 59, 1196, 1202, 2075, 3460, 3677 |
| SduI | GDGCHC | 6 cut(s) | 161, 285, 372, 1282, 3220, 3754 |
| SfcI | CTRYAG | 5 cut(s) | 162, 1425, 2505, 3390, 3969 |
| Sfr274I | CTCGAG | 1 cut(s) | 1019 |
| Sfr303I | CCGCGG | 1 cut(s) | 2431 |
| SgrBI | CCGCGG | 1 cut(s) | 2431 |
| SinI | GGWCC | 2 cut(s) | 1090, 3057 |
| SlaI | CTCGAG | 1 cut(s) | 1019 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2448, 2454, 3129, 3249, 3655 |
| SmlI | CTYRAG | 9 cut(s) | 102, 254, 374, 671, 1019, 1184, 1363, 1653, 2866 |
| SmoI | CTYRAG | 9 cut(s) | 102, 254, 374, 671, 1019, 1184, 1363, 1653, 2866 |
| SpeI | ACTAGT | 2 cut(s) | 857, 3478 |
| SphI | GCATGC | 3 cut(s) | 2400, 3037, 3841 |
| SseBI | AGGCCT | 2 cut(s) | 263, 3522 |
| SsiI | CCGC | 6 cut(s) | 1004, 1691, 2428, 2430, 3495, 3706 |
| SspI | AATATT | 2 cut(s) | 1761, 1849 |
| SspMI | CTAG | 7 cut(s) | 597, 858, 1205, 2027, 2264, 3479, 3524 |
| SstI | GAGCTC | 3 cut(s) | 161, 372, 3220 |
| StuI | AGGCCT | 2 cut(s) | 263, 3522 |
| StyI | CCWWGG | 7 cut(s) | 93, 183, 264, 3023, 3229, 3250, 3523 |
| TaaI | ACNGT | 5 cut(s) | 529, 1109, 2212, 2502, 3112 |
| TaiI | ACGT | 6 cut(s) | 78, 201, 337, 3109, 3446, 3636 |
| TatI | WGTACW | 1 cut(s) | 928 |
| TauI | GCSGC | 3 cut(s) | 1693, 3497, 3709 |
| TscAI | CASTG | 7 cut(s) | 1081, 1322, 1867, 2083, 2857, 3169, 3908 |
| TseFI | GTSAC | 5 cut(s) | 1234, 1313, 1333, 2001, 2078 |
| Tsp45I | GTSAC | 5 cut(s) | 1234, 1313, 1333, 2001, 2078 |
| TspGWI | ACGGA | 3 cut(s) | 2595, 3219, 3624 |
| TspRI | CASTG | 7 cut(s) | 1081, 1322, 1867, 2083, 2857, 3169, 3908 |
| Tth111I | GACNNNGTC | 2 cut(s) | 77, 3317 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 243, 622 |
| Vha464I | CTTAAG | 1 cut(s) | 374 |
| VneI | GTGCAC | 1 cut(s) | 1278 |
| VpaK11BI | GGWCC | 2 cut(s) | 1090, 3057 |
| VspI | ATTAAT | 1 cut(s) | 408 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1835 |
| XapI | RAATTY | 6 cut(s) | 826, 910, 1384, 2806, 3551, 3737 |
| XbaI | TCTAGA | 1 cut(s) | 596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3770 |
| XhoI | CTCGAG | 1 cut(s) | 1019 |
| XmaJI | CCTAGG | 1 cut(s) | 3523 |
| XmiI | GTMKAC | 1 cut(s) | 1287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2238 |
| XspI | CTAG | 7 cut(s) | 597, 858, 1205, 2027, 2264, 3479, 3524 |
| Zsp2I | ATGCAT | 5 cut(s) | 550, 1223, 1628, 2398, 2402 |