Mediator of RNA polymerase II transcription subunit 33A-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23590 |
| fragaria_vesca | FvH4_4g14380 FvH4_4g14390 |
| malus_domestica | MD13G1182100.v1.1 MD13G1182200.v1.1 MD16G1182600.v1.1 |
| prunus_persica | Prupe.1G150000_v2.0.a1 Prupe.1G150000_v2.0.a1 Prupe.1G150100_v2.0.a1 |
| pyrus_communis | pycom13g15720 pycom16g15330 |
| rosa_chinensis | RchiOBHm_Chr4g0418521 RchiOBHm_Chr4g0418541 |
| rosa_laevigata | RLG00000007855 RLG00000007856 |
| rosa_multiflora | Rmu_sc0000363.1_g000040 Rmu_sc0001879.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00361790 Rroxscaffold_5G00361800 |
| rosa_rugosa | Rorug04G0154000 Rorug04G0154100.1 |
| rosa_samantha | Rh4AG215600 Rh4AG215700 Rh4BG215000 Rh4BG215100 Rh4CG227200 Rh4CG227300 Rh4DG213900 Rh4DG214000 |
| rosa_wichuraiana | Rw4G018240 Rw4G018250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3053 |
| Acc36I | ACCTGC | 1 cut(s) | 2554 |
| AccB1I | GGYRCC | 1 cut(s) | 3674 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 192, 295, 3100 |
| AccI | GTMKAC | 1 cut(s) | 2316 |
| AciI | CCGC | 4 cut(s) | 754, 1306, 1309, 3658 |
| AclI | AACGTT | 1 cut(s) | 2935 |
| AclWI | GGATC | 6 cut(s) | 62, 115, 1753, 2262, 3198, 3211 |
| AcoI | YGGCCR | 2 cut(s) | 1565, 3190 |
| AcsI | RAATTY | 7 cut(s) | 699, 793, 2482, 2721, 3222, 3243, 3686 |
| AcuI | CTGAAG | 2 cut(s) | 2138, 2727 |
| AcyI | GRCGYC | 1 cut(s) | 3443 |
| AfaI | GTAC | 6 cut(s) | 1128, 2169, 2201, 3263, 3816, 3904 |
| AflII | CTTAAG | 2 cut(s) | 323, 344 |
| AflIII | ACRYGT | 2 cut(s) | 3256, 3753 |
| AgeI | ACCGGT | 2 cut(s) | 1040, 3264 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 268, 300, 2482, 2514 |
| Alw21I | GWGCWC | 4 cut(s) | 2608, 3184, 3606, 3703 |
| Alw26I | GTCTC | 6 cut(s) | 322, 354, 861, 1327, 1857, 3823 |
| Alw44I | GTGCAC | 1 cut(s) | 3699 |
| AlwI | GGATC | 6 cut(s) | 62, 115, 1753, 2262, 3198, 3211 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2306 |
| Ama87I | CYCGRG | 2 cut(s) | 858, 2715 |
| ApaI | GGGCCC | 1 cut(s) | 1157 |
| ApaLI | GTGCAC | 1 cut(s) | 3699 |
| ApoI | RAATTY | 7 cut(s) | 699, 793, 2482, 2721, 3222, 3243, 3686 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3915, 3947 |
| AseI | ATTAAT | 1 cut(s) | 1050 |
| AsiGI | ACCGGT | 2 cut(s) | 1040, 3264 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2568, 2617 |
| AspLEI | GCGC | 1 cut(s) | 1506 |
| AsuHPI | GGTGA | 5 cut(s) | 1355, 2240, 3219, 3230, 3430 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| AvaI | CYCGRG | 2 cut(s) | 858, 2715 |
| AvaII | GGWCC | 3 cut(s) | 1141, 1981, 2507 |
| BaeGI | GKGCMC | 3 cut(s) | 186, 1157, 3703 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2183, 2216, 3245, 3278 |
| BalI | TGGCCA | 2 cut(s) | 1567, 3192 |
| BamHI | GGATCC | 1 cut(s) | 3203 |
| BanI | GGYRCC | 1 cut(s) | 3674 |
| BanII | GRGCYC | 1 cut(s) | 1157 |
| BauI | CACGAG | 1 cut(s) | 2625 |
| BbsI | GAAGAC | 5 cut(s) | 419, 2526, 2620, 3049, 3277 |
| Bbv12I | GWGCWC | 4 cut(s) | 2608, 3184, 3606, 3703 |
| BccI | CCATC | 9 cut(s) | 543, 992, 1277, 1490, 1515, 2415, 3033, 3317, 3701 |
| BceAI | ACGGC | 1 cut(s) | 3671 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 829, 863 |
| BclI | TGATCA | 2 cut(s) | 378, 3489 |
| BcoDI | GTCTC | 6 cut(s) | 322, 354, 861, 1327, 1857, 3823 |
| BfmI | CTRYAG | 5 cut(s) | 2637, 2844, 3083, 3402, 3873 |
| BfrI | CTTAAG | 2 cut(s) | 323, 344 |
| BfuAI | ACCTGC | 1 cut(s) | 2554 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1397 |
| BlpI | GCTNAGC | 1 cut(s) | 1705 |
| Bme18I | GGWCC | 3 cut(s) | 1141, 1981, 2507 |
| BmeT110I | CYCGRG | 2 cut(s) | 858, 2715 |
| BmrI | ACTGGG | 1 cut(s) | 2754 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| BmuI | ACTGGG | 1 cut(s) | 2754 |
| BpiI | GAAGAC | 5 cut(s) | 419, 2526, 2620, 3049, 3277 |
| BpmI | CTGGAG | 7 cut(s) | 224, 465, 795, 1309, 1647, 2146, 2844 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1799 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1705 |
| BpuEI | CTTGAG | 3 cut(s) | 1602, 2168, 3145 |
| BsaAI | YACGTR | 2 cut(s) | 3257, 3754 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1002, 1736, 3202 |
| BsaHI | GRCGYC | 1 cut(s) | 3443 |
| BsaJI | CCNNGG | 6 cut(s) | 531, 586, 2961, 2987, 3193, 3670 |
| BsaWI | WCCGGW | 3 cut(s) | 1040, 1858, 3264 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 438, 468, 793, 823, 1645, 1675, 2842, 2872 |
| Bse118I | RCCGGY | 2 cut(s) | 1040, 3264 |
| Bse3DI | GCAATG | 5 cut(s) | 943, 999, 1527, 3172, 3414 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1002, 1736, 3202 |
| BseDI | CCNNGG | 6 cut(s) | 531, 586, 2961, 2987, 3193, 3670 |
| BseGI | GGATG | 7 cut(s) | 640, 1003, 2137, 2180, 3151, 3804, 3817 |
| BseJI | GATNNNNATC | 3 cut(s) | 1002, 1736, 3202 |
| BseMI | GCAATG | 5 cut(s) | 943, 999, 1527, 3172, 3414 |
| BseMII | CTCAG | 7 cut(s) | 144, 365, 2187, 2956, 3428, 3525, 3824 |
| BseRI | GAGGAG | 7 cut(s) | 622, 1244, 1356, 1359, 1845, 2133, 2613 |
| BseSI | GKGCMC | 3 cut(s) | 186, 1157, 3703 |
| BseYI | CCCAGC | 2 cut(s) | 168, 288 |
| BsgI | GTGCAG | 3 cut(s) | 714, 3769, 3933 |
| BshNI | GGYRCC | 1 cut(s) | 3674 |
| BshTI | ACCGGT | 2 cut(s) | 1040, 3264 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2608, 3184, 3606, 3703 |
| BsiHKCI | CYCGRG | 2 cut(s) | 858, 2715 |
| BsiSI | CCGG | 4 cut(s) | 1041, 1859, 2765, 3265 |
| BslFI | GGGAC | 4 cut(s) | 1154, 1967, 2863, 2953 |
| BsmAI | GTCTC | 6 cut(s) | 322, 354, 861, 1327, 1857, 3823 |
| BsmFI | GGGAC | 4 cut(s) | 1154, 1967, 2863, 2953 |
| BsmI | GAATGC | 1 cut(s) | 2102 |
| BsoBI | CYCGRG | 2 cut(s) | 858, 2715 |
| Bsp120I | GGGCCC | 1 cut(s) | 1153 |
| Bsp1286I | GDGCHC | 6 cut(s) | 186, 1157, 2608, 3184, 3606, 3703 |
| Bsp1407I | TGTACA | 2 cut(s) | 1126, 3814 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1705 |
| Bsp19I | CCATGG | 3 cut(s) | 586, 2987, 3193 |
| BspACI | CCGC | 4 cut(s) | 754, 1306, 1309, 3658 |
| BspCNI | CTCAG | 7 cut(s) | 143, 364, 2188, 2955, 3427, 3526, 3825 |
| BspHI | TCATGA | 2 cut(s) | 381, 3288 |
| BspMAI | CTGCAG | 2 cut(s) | 2848, 3087 |
| BspMI | ACCTGC | 1 cut(s) | 2554 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BspPI | GGATC | 6 cut(s) | 62, 115, 1753, 2262, 3198, 3211 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 1122 |
| BspT107I | GGYRCC | 1 cut(s) | 3674 |
| BspTI | CTTAAG | 2 cut(s) | 323, 344 |
| BsrDI | GCAATG | 5 cut(s) | 943, 999, 1527, 3172, 3414 |
| BsrFI | RCCGGY | 2 cut(s) | 1040, 3264 |
| BsrGI | TGTACA | 2 cut(s) | 1126, 3814 |
| BssAI | RCCGGY | 2 cut(s) | 1040, 3264 |
| BssECI | CCNNGG | 6 cut(s) | 531, 586, 2961, 2987, 3193, 3670 |
| BssNI | GRCGYC | 1 cut(s) | 3443 |
| BssSI | CACGAG | 1 cut(s) | 2625 |
| BssT1I | CCWWGG | 5 cut(s) | 586, 2961, 2987, 3193, 3670 |
| Bst2BI | CACGAG | 1 cut(s) | 2625 |
| Bst4CI | ACNGT | 5 cut(s) | 90, 646, 762, 2176, 3076 |
| Bst6I | CTCTTC | 5 cut(s) | 258, 599, 1122, 3291, 3821 |
| BstACI | GRCGYC | 1 cut(s) | 3443 |
| BstAFI | CTTAAG | 2 cut(s) | 323, 344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3596 |
| BstAUI | TGTACA | 2 cut(s) | 1126, 3814 |
| BstBAI | YACGTR | 2 cut(s) | 3257, 3754 |
| BstC8I | GCNNGC | 9 cut(s) | 141, 715, 729, 768, 1187, 1525, 2634, 2953, 3747 |
| BstDSI | CCRYGG | 3 cut(s) | 586, 2987, 3193 |
| BstF5I | GGATG | 7 cut(s) | 640, 1003, 2137, 2180, 3151, 3804, 3817 |
| BstHHI | GCGC | 1 cut(s) | 1506 |
| BstMAI | GTCTC | 6 cut(s) | 322, 354, 861, 1327, 1857, 3823 |
| BstNSI | RCATGY | 6 cut(s) | 1189, 1504, 1998, 2364, 2676, 3342 |
| BstSFI | CTRYAG | 5 cut(s) | 2637, 2844, 3083, 3402, 3873 |
| BstSLI | GKGCMC | 3 cut(s) | 186, 1157, 3703 |
| BstV2I | GAAGAC | 5 cut(s) | 419, 2526, 2620, 3049, 3277 |
| BstX2I | RGATCY | 1 cut(s) | 3203 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 151, 3215 |
| BstYI | RGATCY | 1 cut(s) | 3203 |
| BtgI | CCRYGG | 3 cut(s) | 586, 2987, 3193 |
| BtgZI | GCGATG | 2 cut(s) | 1427, 3052 |
| BtsCI | GGATG | 7 cut(s) | 640, 1003, 2137, 2180, 3151, 3804, 3817 |
| BtsI | GCAGTG | 2 cut(s) | 1793, 3606 |
| BtsIMutI | CAGTG | 7 cut(s) | 138, 300, 438, 1793, 3105, 3526, 3606 |
| BveI | ACCTGC | 1 cut(s) | 2554 |
| Cac8I | GCNNGC | 9 cut(s) | 141, 715, 729, 768, 1187, 1525, 2634, 2953, 3747 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2306 |
| CciI | TCATGA | 2 cut(s) | 381, 3288 |
| CfoI | GCGC | 1 cut(s) | 1506 |
| Cfr10I | RCCGGY | 2 cut(s) | 1040, 3264 |
| CseI | GACGC | 2 cut(s) | 1022, 3432 |
| CsiI | ACCWGGT | 1 cut(s) | 2226 |
| Csp6I | GTAC | 6 cut(s) | 1127, 2168, 2200, 3262, 3815, 3903 |
| CspAI | ACCGGT | 2 cut(s) | 1040, 3264 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1191, 1226 |
| CviQI | GTAC | 6 cut(s) | 1127, 2168, 2200, 3262, 3815, 3903 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3053 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3053 |
| EaeI | YGGCCR | 2 cut(s) | 1565, 3190 |
| Eam1104I | CTCTTC | 5 cut(s) | 258, 599, 1122, 3291, 3821 |
| EarI | CTCTTC | 5 cut(s) | 258, 599, 1122, 3291, 3821 |
| Eco130I | CCWWGG | 5 cut(s) | 586, 2961, 2987, 3193, 3670 |
| Eco147I | AGGCCT | 2 cut(s) | 212, 1523 |
| Eco24I | GRGCYC | 1 cut(s) | 1157 |
| Eco32I | GATATC | 4 cut(s) | 1764, 2557, 2830, 3717 |
| Eco47I | GGWCC | 3 cut(s) | 1141, 1981, 2507 |
| Eco57I | CTGAAG | 2 cut(s) | 2138, 2727 |
| Eco88I | CYCGRG | 2 cut(s) | 858, 2715 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1141, 1153, 1154, 1788 |
| EcoRI | GAATTC | 3 cut(s) | 699, 2482, 3243 |
| EcoRV | GATATC | 4 cut(s) | 1764, 2557, 2830, 3717 |
| EcoT14I | CCWWGG | 5 cut(s) | 586, 2961, 2987, 3193, 3670 |
| EcoT22I | ATGCAT | 3 cut(s) | 499, 1187, 2104 |
| EcoT38I | GRGCYC | 1 cut(s) | 1157 |
| ErhI | CCWWGG | 5 cut(s) | 586, 2961, 2987, 3193, 3670 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2206, 2238 |
| FaqI | GGGAC | 4 cut(s) | 1154, 1967, 2863, 2953 |
| FbaI | TGATCA | 2 cut(s) | 378, 3489 |
| FblI | GTMKAC | 1 cut(s) | 2316 |
| FokI | GGATG | 7 cut(s) | 647, 1010, 2124, 2167, 3158, 3811, 3824 |
| FriOI | GRGCYC | 1 cut(s) | 1157 |
| GlaI | GCGC | 1 cut(s) | 1505 |
| GsaI | CCCAGC | 2 cut(s) | 172, 292 |
| GsuI | CTGGAG | 7 cut(s) | 224, 465, 795, 1309, 1647, 2146, 2844 |
| HapII | CCGG | 4 cut(s) | 1041, 1859, 2765, 3265 |
| HgaI | GACGC | 2 cut(s) | 1022, 3432 |
| HhaI | GCGC | 1 cut(s) | 1506 |
| Hin1I | GRCGYC | 1 cut(s) | 3443 |
| Hin6I | GCGC | 1 cut(s) | 1504 |
| HinP1I | GCGC | 1 cut(s) | 1504 |
| HincII | GTYRAC | 6 cut(s) | 39, 831, 1012, 1635, 1948, 3459 |
| HindII | GTYRAC | 6 cut(s) | 39, 831, 1012, 1635, 1948, 3459 |
| HindIII | AAGCTT | 1 cut(s) | 1702 |
| HpaI | GTTAAC | 2 cut(s) | 39, 3459 |
| HpaII | CCGG | 4 cut(s) | 1041, 1859, 2765, 3265 |
| HphI | GGTGA | 5 cut(s) | 1355, 2240, 3219, 3230, 3430 |
| HpyAV | CCTTC | 8 cut(s) | 202, 506, 686, 1067, 1465, 2123, 3516, 3548 |
| HpyCH4III | ACNGT | 5 cut(s) | 90, 646, 762, 2176, 3076 |
| HpyCH4IV | ACGT | 6 cut(s) | 1585, 1920, 2935, 3256, 3740, 3753 |
| HpySE526I | ACGT | 6 cut(s) | 1585, 1920, 2935, 3256, 3740, 3753 |
| Hsp92I | GRCGYC | 1 cut(s) | 3443 |
| HspAI | GCGC | 1 cut(s) | 1504 |
| KflI | GGGWCCC | 1 cut(s) | 1141 |
| Ksp22I | TGATCA | 2 cut(s) | 378, 3489 |
| KspAI | GTTAAC | 2 cut(s) | 39, 3459 |
| LguI | GCTCTTC | 2 cut(s) | 258, 1122 |
| LmnI | GCTCC | 5 cut(s) | 136, 1819, 1912, 3179, 3611 |
| MabI | ACCWGGT | 1 cut(s) | 2226 |
| MaeII | ACGT | 6 cut(s) | 1585, 1920, 2935, 3256, 3740, 3753 |
| MaeIII | GTNAC | 9 cut(s) | 688, 756, 842, 1596, 2239, 2710, 2899, 3044, 3304 |
| MfeI | CAATTG | 3 cut(s) | 474, 485, 3003 |
| MflI | RGATCY | 1 cut(s) | 3203 |
| MhlI | GDGCHC | 6 cut(s) | 186, 1157, 2608, 3184, 3606, 3703 |
| MlsI | TGGCCA | 2 cut(s) | 1567, 3192 |
| MluNI | TGGCCA | 2 cut(s) | 1567, 3192 |
| MlyI | GAGTC | 6 cut(s) | 1357, 2047, 2312, 2975, 3016, 3406 |
| MmeI | TCCRAC | 5 cut(s) | 123, 1787, 1912, 3179, 3864 |
| Mox20I | TGGCCA | 2 cut(s) | 1567, 3192 |
| Mph1103I | ATGCAT | 3 cut(s) | 499, 1187, 2104 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2568, 2617 |
| MscI | TGGCCA | 2 cut(s) | 1567, 3192 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1466, 3016, 3213, 3314, 3680 |
| Msp20I | TGGCCA | 2 cut(s) | 1567, 3192 |
| MspA1I | CMGCKG | 4 cut(s) | 754, 1278, 2978, 3917 |
| MspCI | CTTAAG | 2 cut(s) | 323, 344 |
| MspI | CCGG | 4 cut(s) | 1041, 1859, 2765, 3265 |
| MunI | CAATTG | 3 cut(s) | 474, 485, 3003 |
| Mva1269I | GAATGC | 1 cut(s) | 2102 |
| NcoI | CCATGG | 3 cut(s) | 586, 2987, 3193 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NmuCI | GTSAC | 2 cut(s) | 842, 3044 |
| NsiI | ATGCAT | 3 cut(s) | 499, 1187, 2104 |
| NspI | RCATGY | 6 cut(s) | 1189, 1504, 1998, 2364, 2676, 3342 |
| PaeI | GCATGC | 1 cut(s) | 1189 |
| PaeR7I | CTCGAG | 2 cut(s) | 858, 2715 |
| PagI | TCATGA | 2 cut(s) | 381, 3288 |
| PceI | AGGCCT | 2 cut(s) | 212, 1523 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 1122 |
| PctI | GAATGC | 1 cut(s) | 2102 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2568, 2617 |
| PfeI | GAWTC | 6 cut(s) | 395, 1420, 2773, 3198, 3632, 3731 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 192, 295, 3100 |
| PfoI | TCCNGGA | 1 cut(s) | 1297 |
| PinAI | ACCGGT | 2 cut(s) | 1040, 3264 |
| PleI | GAGTC | 6 cut(s) | 1357, 2047, 2312, 2974, 3016, 3406 |
| PpsI | GAGTC | 6 cut(s) | 1357, 2047, 2312, 2974, 3016, 3406 |
| Ppu21I | YACGTR | 2 cut(s) | 3257, 3754 |
| PpuMI | RGGWCCY | 1 cut(s) | 1141 |
| PshBI | ATTAAT | 1 cut(s) | 1050 |
| Psp1406I | AACGTT | 1 cut(s) | 2935 |
| Psp5II | RGGWCCY | 1 cut(s) | 1141 |
| PspFI | CCCAGC | 2 cut(s) | 168, 288 |
| PspOMI | GGGCCC | 1 cut(s) | 1153 |
| PspPPI | RGGWCCY | 1 cut(s) | 1141 |
| PspXI | VCTCGAGB | 1 cut(s) | 2715 |
| PstI | CTGCAG | 2 cut(s) | 2848, 3087 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2306 |
| PsuI | RGATCY | 1 cut(s) | 3203 |
| PvuII | CAGCTG | 3 cut(s) | 1278, 2978, 3917 |
| RsaI | GTAC | 6 cut(s) | 1128, 2169, 2201, 3263, 3816, 3904 |
| RsaNI | GTAC | 6 cut(s) | 1127, 2168, 2200, 3262, 3815, 3903 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1466, 3016, 3213, 3314, 3680 |
| SapI | GCTCTTC | 2 cut(s) | 258, 1122 |
| SchI | GAGTC | 6 cut(s) | 1357, 2047, 2312, 2975, 3016, 3406 |
| SduI | GDGCHC | 6 cut(s) | 186, 1157, 2608, 3184, 3606, 3703 |
| SexAI | ACCWGGT | 1 cut(s) | 2226 |
| SfcI | CTRYAG | 5 cut(s) | 2637, 2844, 3083, 3402, 3873 |
| Sfr274I | CTCGAG | 2 cut(s) | 858, 2715 |
| SinI | GGWCC | 3 cut(s) | 1141, 1981, 2507 |
| SlaI | CTCGAG | 2 cut(s) | 858, 2715 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1466, 3016, 3213, 3314, 3680 |
| SmlI | CTYRAG | 7 cut(s) | 323, 344, 858, 1617, 2147, 2715, 3160 |
| SmoI | CTYRAG | 7 cut(s) | 323, 344, 858, 1617, 2147, 2715, 3160 |
| SphI | GCATGC | 1 cut(s) | 1189 |
| SseBI | AGGCCT | 2 cut(s) | 212, 1523 |
| SsiI | CCGC | 4 cut(s) | 754, 1306, 1309, 3658 |
| SspI | AATATT | 3 cut(s) | 226, 420, 1036 |
| StuI | AGGCCT | 2 cut(s) | 212, 1523 |
| StyI | CCWWGG | 5 cut(s) | 586, 2961, 2987, 3193, 3670 |
| TaaI | ACNGT | 5 cut(s) | 90, 646, 762, 2176, 3076 |
| TaiI | ACGT | 6 cut(s) | 1588, 1923, 2938, 3259, 3743, 3756 |
| TaqI | TCGA | 9 cut(s) | 280, 459, 859, 1716, 2257, 2716, 2919, 3070, 3933 |
| TaqII | GACCGA | 1 cut(s) | 3308 |
| TatI | WGTACW | 2 cut(s) | 1126, 3814 |
| TauI | GCSGC | 2 cut(s) | 1311, 3661 |
| TfiI | GAWTC | 6 cut(s) | 395, 1420, 2773, 3198, 3632, 3731 |
| TscAI | CASTG | 7 cut(s) | 138, 300, 438, 1800, 3105, 3533, 3606 |
| TseFI | GTSAC | 2 cut(s) | 842, 3044 |
| Tsp45I | GTSAC | 2 cut(s) | 842, 3044 |
| TspRI | CASTG | 7 cut(s) | 138, 300, 438, 1800, 3105, 3533, 3606 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 192, 295, 3100 |
| Vha464I | CTTAAG | 2 cut(s) | 323, 344 |
| VneI | GTGCAC | 1 cut(s) | 3699 |
| VpaK11BI | GGWCC | 3 cut(s) | 1141, 1981, 2507 |
| VspI | ATTAAT | 1 cut(s) | 1050 |
| XapI | RAATTY | 7 cut(s) | 699, 793, 2482, 2721, 3222, 3243, 3686 |
| XceI | RCATGY | 6 cut(s) | 1189, 1504, 1998, 2364, 2676, 3342 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1601 |
| XhoI | CTCGAG | 2 cut(s) | 858, 2715 |
| XmiI | GTMKAC | 1 cut(s) | 2316 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2568, 2617 |
| Zsp2I | ATGCAT | 3 cut(s) | 499, 1187, 2104 |