Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Forward (+)

25712047 .. 25713461

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1245200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGAATGTTCACCTTCGTGTTGAGGACCTCCGGGGGAGAGTGGTCCGCCAAACAGCAGAATGGAGACCTTGAGGCCTCCGCTCCCTCCACATTCGAGCTCCAGAGGAAGCTCGTCCAGTCCGCTCTCTCTTCCGAGTCCTCCGGCGGTGTCCAGACCTCCTACTCTCCTGTCACTCCCACCTCTGCCGTTTTCCAGGTGATCTTTGGTGACGGTGGTGGTGGCGGTGGTGCCTTCATTGGAGGTGGAGCTGCTGCTGCTGCTCCTGGAGTTTGTGCAGCGGCTGCTGCAGAGGCTCCCCCGGCTGAGGAGAAGAAGGAAGAGAAGGAGGAGAGCGACGATGACATGGGATTCTCTCTTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

123

Amino Acids

12.3

Weight (kDa)

4.22

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	76 - 121	1.7e-10	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	2 cut(s)	83, 125
AciI	CCGC	6 cut(s)	48, 81, 123, 147, 225, 281
AfiI	CCNNNNNNNGG	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	195, 265
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	100, 112, 251
AluI	AGCT	3 cut(s)	100, 112, 251
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	7 cut(s)	251, 254, 257, 260, 278, 284, 287
AspS9I	GGNCC	2 cut(s)	27, 45
AsuC2I	CCSGG	2 cut(s)	34, 302
AsuHPI	GGTGA	3 cut(s)	4, 211, 221
AvaII	GGWCC	2 cut(s)	27, 45
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	7 cut(s)	238, 241, 244, 247, 271, 274, 290
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	197, 267
BcnI	CCSGG	2 cut(s)	34, 302
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	8 cut(s)	252, 255, 258, 261, 279, 282, 285, 288
BlsI	GCNGC	8 cut(s)	253, 256, 259, 262, 280, 283, 286, 289
Bme1390I	CCNGG	4 cut(s)	34, 197, 267, 302
Bme18I	GGWCC	2 cut(s)	27, 45
BmgT120I	GGNCC	2 cut(s)	27, 45
BmiI	GGNNCC	2 cut(s)	232, 297
BmrFI	CCNGG	4 cut(s)	34, 197, 267, 302
BpmI	CTGGAG	2 cut(s)	86, 288
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	34, 302
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	33, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	197, 267
BseDI	CCNNGG	2 cut(s)	33, 300
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	323, 344
BseXI	GCAGC	7 cut(s)	238, 241, 244, 247, 271, 274, 290
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	33, 144, 302
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	6 cut(s)	48, 81, 123, 147, 225, 281
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	232, 297
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	83, 125
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	33, 300
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	197, 267
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	136, 315
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 260, 284, 287, 293, 302
BstNI	CCWGG	2 cut(s)	197, 267
BstSCI	CCNGG	4 cut(s)	32, 195, 265, 300
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	7 cut(s)	238, 241, 244, 247, 271, 274, 290
BsuRI	GGCC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	27, 45
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	77, 100, 112, 251, 284, 296, 305
CviKI_1	RGCY	7 cut(s)	77, 100, 112, 251, 284, 296, 305
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	136, 315
EarI	CTCTTC	2 cut(s)	136, 315
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	27, 45
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	195, 265
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	349
FaiI	YATR	1 cut(s)	347
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	8 cut(s)	252, 255, 258, 261, 279, 282, 285, 288
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	252, 255, 258, 261, 279, 282, 285, 288
GluI	GCNGC	8 cut(s)	252, 255, 258, 261, 279, 282, 285, 288
GsuI	CTGGAG	2 cut(s)	86, 288
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	3 cut(s)	33, 144, 302
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	2 cut(s)	137, 351
HpaII	CCGG	3 cut(s)	33, 144, 302
HphI	GGTGA	3 cut(s)	4, 211, 221
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	103, 154
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	4 cut(s)	25, 244, 310, 319
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	278, 290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 260, 284, 287, 293, 302
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	5 cut(s)	88, 105, 248, 268, 301
Lsp1109I	GCAGC	7 cut(s)	238, 241, 244, 247, 271, 274, 290
MaeIII	GTNAC	2 cut(s)	172, 209
MalI	GATC	1 cut(s)	203
MbiI	CCGCTC	2 cut(s)	83, 125
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	123, 325, 332
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	33, 144, 302
MspR9I	CCNGG	4 cut(s)	34, 197, 267, 302
MvaI	CCWGG	2 cut(s)	197, 267
MwoI	GCNNNNNNNGC	6 cut(s)	257, 260, 284, 287, 293, 302
NciI	CCSGG	2 cut(s)	34, 302
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	232, 297
NmuCI	GTSAC	2 cut(s)	172, 209
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	8 cut(s)	253, 256, 259, 262, 280, 283, 286, 289
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	195, 265
PspGI	CCWGG	2 cut(s)	195, 265
PspN4I	GGNNCC	2 cut(s)	232, 297
PspPI	GGNCC	2 cut(s)	27, 45
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	8 cut(s)	252, 255, 258, 261, 279, 282, 285, 288
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	27, 45
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	34, 197, 267, 302
SduI	GDGCHC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	27, 45
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	6 cut(s)	48, 81, 123, 147, 225, 281
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	32, 195, 265, 300
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	172, 209
TseI	GCWGC	7 cut(s)	251, 254, 257, 260, 278, 284, 287
Tsp45I	GTSAC	2 cut(s)	172, 209
TspDTI	ATGAA	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	27, 45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.