Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

5783779 .. 5785447

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G079500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAGTGTTCACTTTCGTGTTGAGGACCTCAGGAGGAGAGTGGAGCGCGAAACAGCACAATGGAGACCTTGAGGCCTCTGCTGCCTCCACATTCGAGCTCCAGAGGAAGCTCGTCCACACCGCTCTCTCTACCGACTCTTCCGGTGGGGTCCAGACCTCCTACTCTCCAGTCACTCCCACATCAGCCGTCTTCCAGGTGATCGTTGGTGGTGGCGGTGGTGGTGGTGCCTTTATTGGAGGCGGAGCTGCTGCAGCTCCTGGAGGTGGTGCGGCAGCTGCAGAGGCTCCCCCAGCCGAGGAGAAGAAGGAAGAAAAGGAGGAAAGTGATGATGACATGGGATTCTCTCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

120

Amino Acids

11.88

Weight (kDa)

4.47

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	50
AciI	CCGC	4 cut(s)	123, 216, 243, 272
AfiI	CCNNNNNNNGG	2 cut(s)	266, 298
AjnI	CCWGG	2 cut(s)	195, 259
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	100, 112, 248, 257, 278
AluI	AGCT	5 cut(s)	100, 112, 248, 257, 278
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	6 cut(s)	83, 248, 251, 254, 275, 278
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	27, 151
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	27, 151
AxyI	CCTNAGG	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	6 cut(s)	70, 235, 238, 265, 266, 287
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	197, 261
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	2 cut(s)	252, 279
BisI	GCNGC	7 cut(s)	84, 249, 252, 255, 273, 276, 279
BlsI	GCNGC	7 cut(s)	85, 250, 253, 256, 274, 277, 280
Bme1390I	CCNGG	2 cut(s)	197, 261
Bme18I	GGWCC	2 cut(s)	27, 151
BmgT120I	GGNCC	2 cut(s)	27, 151
BmiI	GGNNCC	3 cut(s)	152, 229, 288
BmrFI	CCNGG	2 cut(s)	197, 261
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	3 cut(s)	86, 153, 282
BpuEI	CTTGAG	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 298
Bse1I	ACTGG	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	197, 261
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	266, 298
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	51, 314
BseXI	GCAGC	6 cut(s)	70, 235, 238, 265, 266, 287
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	266, 298
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	123, 216, 243, 272
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	152, 229, 288
BspMAI	CTGCAG	2 cut(s)	256, 283
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	197, 261
Bst6I	CTCTTC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 254, 278, 284, 293
BstNI	CCWGG	2 cut(s)	197, 261
BstSCI	CCNGG	2 cut(s)	195, 259
BstSFI	CTRYAG	2 cut(s)	252, 279
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	70, 235, 238, 265, 266, 287
BstV2I	GAAGAC	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	27, 151
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	77, 100, 112, 188, 248, 257, 278, 287, 296
CviKI_1	RGCY	9 cut(s)	77, 100, 112, 188, 248, 257, 278, 287, 296
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	27, 151
Eco53kI	GAGCTC	1 cut(s)	100
Eco81I	CCTNAGG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	195, 259
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	340
FaiI	YATR	1 cut(s)	338
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	7 cut(s)	84, 249, 252, 255, 273, 276, 279
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	7 cut(s)	84, 249, 252, 255, 273, 276, 279
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	84, 249, 252, 255, 273, 276, 279
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	3 cut(s)	86, 153, 282
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	137, 342
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	12, 118
Hpy188III	TCNNGA	3 cut(s)	33, 103, 154
Hpy8I	GTNNAC	2 cut(s)	12, 118
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	254, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 254, 278, 284, 293
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	5 cut(s)	45, 105, 245, 262, 292
Lsp1109I	GCAGC	6 cut(s)	70, 235, 238, 265, 266, 287
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	203
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	132, 184, 316, 323
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	197, 261
MvaI	CCWGG	2 cut(s)	197, 261
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	83, 254, 278, 284, 293
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	152, 229, 288
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	85, 250, 253, 256, 274, 277, 280
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	195, 259
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	2 cut(s)	195, 259
PspN4I	GGNNCC	3 cut(s)	152, 229, 288
PspPI	GGNCC	2 cut(s)	27, 151
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	2 cut(s)	256, 283
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	7 cut(s)	84, 249, 252, 255, 273, 276, 279
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	27, 151
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	197, 261
SduI	GDGCHC	1 cut(s)	102
SfcI	CTRYAG	2 cut(s)	252, 279
SinI	GGWCC	2 cut(s)	27, 151
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	123, 216, 243, 272
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	195, 259
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	6 cut(s)	83, 248, 251, 254, 275, 278
Tsp45I	GTSAC	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	27, 151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.