Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

20229968 .. 20232125

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGAGTTTTCACCTTCATCGTCAAGAGCTCAGGGGGAGAATGGAGCGGGAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCTCTCGCTTCTGACAGCTCCGGTGGCGTCCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGTCAGTCAACTCGTCTTGGCCTCTGGATTGTAGATACTCAATCGATGATAATGTCAAGGAAACGCAAGGAATGAAGTTGCCTCCTATGCCTAAGAAATGTAGAGTTGATATATTGAGAAGGACTTTAAGGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

8.86

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	48, 123
AcyI	GRCGYC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	30, 141, 159, 331
AluI	AGCT	4 cut(s)	30, 141, 159, 331
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
AoxI	GGCC	3 cut(s)	75, 120, 215
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BciT130I	CCWGG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	77, 122, 217
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiSI	CCGG	1 cut(s)	144
BsnI	GGCC	3 cut(s)	77, 122, 217
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
BspACI	CCGC	2 cut(s)	48, 123
BspANI	GGCC	3 cut(s)	77, 122, 217
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	190
BsrBI	CCGCTC	2 cut(s)	48, 125
BsrI	ACTGG	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	31, 288
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 147, 156, 283
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	77, 122, 217
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	139
CviJI	RGCY	7 cut(s)	30, 77, 122, 141, 159, 217, 331
CviKI_1	RGCY	7 cut(s)	30, 77, 122, 141, 159, 217, 331
DdeI	CTNAG	2 cut(s)	31, 288
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco53kI	GAGCTC	2 cut(s)	30, 159
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	32, 161
FaiI	YATR	2 cut(s)	284, 308
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	32, 161
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	77, 122, 217
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	25, 103, 154, 221
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	25, 96, 189, 309
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 147, 156, 283
HpyF3I	CTNAG	2 cut(s)	31, 288
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	5 cut(s)	45, 88, 105, 146, 164
LpnPI	CCDG	9 cut(s)	18, 91, 104, 116, 131, 157, 167, 206, 209
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	48, 125
MboII	GAAGA	2 cut(s)	81, 184
MhlI	GDGCHC	3 cut(s)	32, 85, 161
MnlI	CCTC	6 cut(s)	55, 67, 99, 193, 228, 288
MseI	TTAA	1 cut(s)	323
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	128, 147, 156, 283
NmuCI	GTSAC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	124
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	190
SacI	GAGCTC	2 cut(s)	32, 161
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	32, 85, 161
SetI	ASST	6 cut(s)	17, 32, 72, 143, 161, 333
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	48, 123
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	117
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	7, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.