Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

28668626 .. 28670198

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1253100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAGTGTTCACCTTCGTGTTGAGGACCTCCGGGGGAGAGTGGTGCGCCAAGCAGCAGAATGGAGACCTTGAGGCCACCGCTCCATCCACATTCGAGCTCCAGAGGAAGCTTGTCCAGTCCGCTCTCTCTTCCGACTCCTCCGGCGGTGTCCAGACCTCCTACTCTCCTGTCACTCCCACCTCAGCCGTCTTCCAGGTGATCGTTGGTGGCGGTGGTGGTGGCGGTGCCTTCATTGGAGGTGGTGCTACTGCTGCGGCTCCAGGAGGTGGTGCAGCGGCTGCTGCAGAGGCTCCCGCAGCTGAGGAGAAGAAGGAAGAGAAGGAGGAGAGCGATGATGACATGGGATTCTCTCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

122

Amino Acids

12.04

Weight (kDa)

4.26

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	75 - 120	4.4e-11	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccBSI	CCGCTC	2 cut(s)	83, 125
AciI	CCGC	8 cut(s)	81, 123, 147, 213, 225, 257, 278, 297
AfiI	CCNNNNNNNGG	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	195, 262
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	100, 112, 302
AluI	AGCT	3 cut(s)	100, 112, 302
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	6 cut(s)	55, 254, 275, 281, 284, 299
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	4, 211
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	2 cut(s)	184, 303
BbvI	GCAGC	6 cut(s)	67, 241, 268, 271, 287, 311
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	197, 264
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	8 cut(s)	56, 255, 258, 276, 279, 282, 285, 300
BlsI	GCNGC	8 cut(s)	57, 256, 259, 277, 280, 283, 286, 301
Bme1390I	CCNGG	3 cut(s)	34, 197, 264
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	229, 261, 294
BmrFI	CCNGG	3 cut(s)	34, 197, 264
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	86, 246
Bpu10I	CCTNAGC	2 cut(s)	184, 303
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	197, 264
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	198, 294
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	130, 320, 341
BseXI	GCAGC	6 cut(s)	67, 241, 268, 271, 287, 311
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	33, 144
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	8 cut(s)	81, 123, 147, 213, 225, 257, 278, 297
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	197, 295
BspLI	GGNNCC	3 cut(s)	229, 261, 294
BspMAI	CTGCAG	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	83, 125
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	197, 264
Bst6I	CTCTTC	2 cut(s)	136, 312
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	184, 303
BstF5I	GGATG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 281, 284, 290, 299
BstNI	CCWGG	2 cut(s)	197, 264
BstSCI	CCNGG	3 cut(s)	32, 195, 262
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	67, 241, 268, 271, 287, 311
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	27
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	8 cut(s)	77, 100, 112, 188, 260, 281, 293, 302
CviKI_1	RGCY	8 cut(s)	77, 100, 112, 188, 260, 281, 293, 302
DdeI	CTNAG	2 cut(s)	184, 303
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	136, 312
EarI	CTCTTC	2 cut(s)	136, 312
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	195, 262
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	8 cut(s)	56, 255, 258, 276, 279, 282, 285, 300
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	56, 255, 258, 276, 279, 282, 285, 300
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	8 cut(s)	56, 255, 258, 276, 279, 282, 285, 300
GsuI	CTGGAG	2 cut(s)	86, 246
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	33, 144
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	137, 348
HpaII	CCGG	2 cut(s)	33, 144
HphI	GGTGA	2 cut(s)	4, 211
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	103, 154
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	25, 241, 307, 316
HpyCH4V	TGCA	2 cut(s)	275, 287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 281, 284, 290, 299
HpyF3I	CTNAG	2 cut(s)	184, 303
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	88, 105, 265, 298
Lsp1109I	GCAGC	6 cut(s)	67, 241, 268, 271, 287, 311
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	203
MbiI	CCGCTC	2 cut(s)	83, 125
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	123, 184, 322, 329
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	159
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	278, 302
MspI	CCGG	2 cut(s)	33, 144
MspR9I	CCNGG	3 cut(s)	34, 197, 264
MvaI	CCWGG	2 cut(s)	197, 264
MwoI	GCNNNNNNNGC	5 cut(s)	254, 281, 284, 290, 299
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	229, 261, 294
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	8 cut(s)	57, 256, 259, 277, 280, 283, 286, 301
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	195, 262
PspGI	CCWGG	2 cut(s)	195, 262
PspN4I	GGNNCC	3 cut(s)	229, 261, 294
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	8 cut(s)	56, 255, 258, 276, 279, 282, 285, 300
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	34, 197, 264
SduI	GDGCHC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	8 cut(s)	81, 123, 147, 213, 225, 257, 278, 297
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	32, 195, 262
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	2 cut(s)	260, 281
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	6 cut(s)	55, 254, 275, 281, 284, 299
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.