Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

32775524 .. 32775757

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGAGTTTTCACCTTCGTCGTCAAGAACTCAGGAGGAGAATGGAGCGATAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCCCTCTCTGCTAACAGCTCTGGTGGCTTCCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGGTGAATTCATTTCGTATTACCTTCTCTCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

77

Amino Acids

8.24

Weight (kDa)

4.94

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	117, 195
AluBI	AGCT	2 cut(s)	141, 159
AluI	AGCT	2 cut(s)	141, 159
Alw21I	GWGCWC	2 cut(s)	85, 161
AoxI	GGCC	2 cut(s)	75, 120
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	4, 211
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	85, 161
BciT130I	CCWGG	2 cut(s)	119, 197
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	119, 197
BmrFI	CCNGG	2 cut(s)	119, 197
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	119, 197
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	77, 122
BsiHKAI	GWGCWC	2 cut(s)	85, 161
BsnI	GGCC	2 cut(s)	77, 122
Bsp1286I	GDGCHC	2 cut(s)	85, 161
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	77, 122
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	119, 197
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 147, 156
BstNI	CCWGG	2 cut(s)	119, 197
BstSCI	CCNGG	2 cut(s)	117, 195
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	77, 122
BtsCI	GGATG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	100
CviJI	RGCY	5 cut(s)	77, 122, 141, 150, 159
CviKI_1	RGCY	5 cut(s)	77, 122, 141, 150, 159
DdeI	CTNAG	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	117, 195
EcoT38I	GRGCYC	1 cut(s)	161
FaiI	YATR	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	77, 122
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HphI	GGTGA	2 cut(s)	4, 211
Hpy188III	TCNNGA	4 cut(s)	25, 33, 103, 154
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	4 cut(s)	25, 96, 189, 229
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 147, 156
HpyF3I	CTNAG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	4 cut(s)	45, 88, 105, 164
LpnPI	CCDG	9 cut(s)	18, 91, 104, 116, 129, 131, 167, 182, 209
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	81, 184
MhlI	GDGCHC	2 cut(s)	85, 161
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	6 cut(s)	29, 55, 67, 99, 137, 193
MspR9I	CCNGG	2 cut(s)	119, 197
MvaI	CCWGG	2 cut(s)	119, 197
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	131, 147, 156
NmuCI	GTSAC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	117, 195
PspGI	CCWGG	2 cut(s)	117, 195
PstI	CTGCAG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	119, 197
SduI	GDGCHC	2 cut(s)	85, 161
SetI	ASST	6 cut(s)	17, 72, 143, 161, 201, 221
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	117, 195
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.