Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

19937770 .. 19938945

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g21450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGAGTGTTCACCTTCGTGTTGAGGACCTCCGGGGGAGAGTGGTGCGCCAAGCAGCAGAATGGAGACCTTGAGGCCTCCGCTCCATCCACATTCGAGCTCCAGAGGAAGCTGGTCCAGTCCGCTCTCTCTTCCGACTCCTCCGGCGGTGTCCAGACCTCCTACTCTCCTGTCACTCCCACCTCAGCCGTCTTCCAGGTGATCGTTGGTGGTGGTGGTGGCGGCGGCGGTGCCTTCATTGGAGGTGGTGGTGGTGCTGTGGCTCCAGGAGGTGGTGCAGCGGCTGCTGCAGAGGCTCCCGCAGCTGAGGAGAAGAAGGAAGAGAAGGAGGAGAGCGATGATGACATGGGATTCTCTCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

123

Amino Acids

12.05

Weight (kDa)

4.26

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccBSI	CCGCTC	2 cut(s)	83, 125
AciI	CCGC	8 cut(s)	81, 123, 147, 222, 225, 228, 281, 300
AfiI	CCNNNNNNNGG	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	195, 265
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	100, 112, 305
AluI	AGCT	3 cut(s)	100, 112, 305
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	5 cut(s)	55, 278, 284, 287, 302
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	27, 115
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	4, 211
AvaII	GGWCC	2 cut(s)	27, 115
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	2 cut(s)	184, 306
BbvI	GCAGC	5 cut(s)	67, 271, 274, 290, 314
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	197, 267
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	8 cut(s)	56, 223, 226, 279, 282, 285, 288, 303
BlsI	GCNGC	8 cut(s)	57, 224, 227, 280, 283, 286, 289, 304
Bme1390I	CCNGG	3 cut(s)	34, 197, 267
Bme18I	GGWCC	2 cut(s)	27, 115
BmgT120I	GGNCC	2 cut(s)	27, 115
BmiI	GGNNCC	3 cut(s)	232, 264, 297
BmrFI	CCNGG	3 cut(s)	34, 197, 267
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	86, 249
Bpu10I	CCTNAGC	2 cut(s)	184, 306
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	197, 267
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	198, 297
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	130, 323, 344
BseXI	GCAGC	5 cut(s)	67, 271, 274, 290, 314
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	33, 144
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	8 cut(s)	81, 123, 147, 222, 225, 228, 281, 300
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	197, 298
BspLI	GGNNCC	3 cut(s)	232, 264, 297
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	83, 125
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	197, 267
Bst6I	CTCTTC	2 cut(s)	136, 315
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	184, 306
BstF5I	GGATG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 287, 293, 302
BstNI	CCWGG	2 cut(s)	197, 267
BstSCI	CCNGG	3 cut(s)	32, 195, 265
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	67, 271, 274, 290, 314
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	27, 115
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	8 cut(s)	77, 100, 112, 188, 263, 284, 296, 305
CviKI_1	RGCY	8 cut(s)	77, 100, 112, 188, 263, 284, 296, 305
DdeI	CTNAG	2 cut(s)	184, 306
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	136, 315
EarI	CTCTTC	2 cut(s)	136, 315
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	27, 115
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	195, 265
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	349
FaiI	YATR	1 cut(s)	347
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	8 cut(s)	56, 223, 226, 279, 282, 285, 288, 303
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	56, 223, 226, 279, 282, 285, 288, 303
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	8 cut(s)	56, 223, 226, 279, 282, 285, 288, 303
GsuI	CTGGAG	2 cut(s)	86, 249
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	33, 144
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	137, 351
HpaII	CCGG	2 cut(s)	33, 144
HphI	GGTGA	2 cut(s)	4, 211
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	103, 154
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	25, 244, 310, 319
HpyCH4V	TGCA	2 cut(s)	278, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 287, 293, 302
HpyF3I	CTNAG	2 cut(s)	184, 306
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	88, 105, 268, 301
Lsp1109I	GCAGC	5 cut(s)	67, 271, 274, 290, 314
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	203
MbiI	CCGCTC	2 cut(s)	83, 125
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	123, 184, 325, 332
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	159
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	281, 305
MspI	CCGG	2 cut(s)	33, 144
MspR9I	CCNGG	3 cut(s)	34, 197, 267
MvaI	CCWGG	2 cut(s)	197, 267
MwoI	GCNNNNNNNGC	4 cut(s)	284, 287, 293, 302
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	232, 264, 297
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	8 cut(s)	57, 224, 227, 280, 283, 286, 289, 304
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	195, 265
PspGI	CCWGG	2 cut(s)	195, 265
PspN4I	GGNNCC	3 cut(s)	232, 264, 297
PspPI	GGNCC	2 cut(s)	27, 115
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	8 cut(s)	56, 223, 226, 279, 282, 285, 288, 303
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	27, 115
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	34, 197, 267
SduI	GDGCHC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	27, 115
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	8 cut(s)	81, 123, 147, 222, 225, 228, 281, 300
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	32, 195, 265
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	3 cut(s)	225, 228, 284
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	5 cut(s)	55, 278, 284, 287, 302
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	27, 115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.