Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

15530438 .. 15531565

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAGTTTTCACCTTCATCGTCAAGAGCTCAGGAGGAGAATGGAGCGGGAAGCAATACGAGGGCGCCCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCTCTCTCTGCTGACAGCTCCGGTGGCGTCCAGAGCTCCTACTCCCCCGTCACTCCTTCCTCTGCAGTCTTCCAGGTGATTATTGGTGGTGGTGGAGGTGGTGGTGCCTTCATTGGTGGAGGTGCCGCAGCAGCTCCAGCAGGTGGTGCAGCAGCAGCTGCAGAGGCTCCTGCAGCTGAGAAGAAGGAGGAAGAGAAGGAGGAGAGTGATGATGACATGGGATTCTCCCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

120

Amino Acids

11.79

Weight (kDa)

4.22

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	69 - 119	8.9e-13	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	3 cut(s)	65, 227, 245
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	48, 123, 249
AcyI	GRCGYC	2 cut(s)	66, 150
AfiI	CCNNNNNNNGG	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	117, 195
AluBI	AGCT	6 cut(s)	30, 141, 159, 257, 281, 299
AluI	AGCT	6 cut(s)	30, 141, 159, 257, 281, 299
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	75, 120
ApeKI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 296
AspLEI	GCGC	2 cut(s)	68, 100
AsuHPI	GGTGA	2 cut(s)	4, 211
BanI	GGYRCC	3 cut(s)	65, 227, 245
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BbvI	GCAGC	7 cut(s)	263, 266, 268, 284, 287, 290, 308
BciT130I	CCWGG	2 cut(s)	119, 197
BfmI	CTRYAG	3 cut(s)	186, 282, 294
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 297
BlsI	GCNGC	9 cut(s)	124, 250, 253, 256, 274, 277, 280, 283, 298
Bme1390I	CCNGG	2 cut(s)	119, 197
BmiI	GGNNCC	4 cut(s)	67, 229, 247, 291
BmrFI	CCNGG	2 cut(s)	119, 197
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	86, 243
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	2 cut(s)	66, 150
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	119, 197
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	45, 291
BseRI	GAGGAG	2 cut(s)	51, 338
BseXI	GCAGC	7 cut(s)	263, 266, 268, 284, 287, 290, 308
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	77, 122
BshNI	GGYRCC	3 cut(s)	65, 227, 245
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	2 cut(s)	77, 122
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
BspACI	CCGC	3 cut(s)	48, 123, 249
BspANI	GGCC	2 cut(s)	77, 122
BspCNI	CTCAG	2 cut(s)	44, 292
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	67, 229, 247, 291
BspMAI	CTGCAG	3 cut(s)	190, 286, 298
BspMI	ACCTGC	1 cut(s)	254
BspT107I	GGYRCC	3 cut(s)	65, 227, 245
BsrBI	CCGCTC	2 cut(s)	48, 125
BssNI	GRCGYC	2 cut(s)	66, 150
Bst2UI	CCWGG	2 cut(s)	119, 197
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	2 cut(s)	66, 150
BstAPI	GCANNNNNTGC	2 cut(s)	269, 281
BstDEI	CTNAG	2 cut(s)	31, 300
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 100
BstNI	CCWGG	2 cut(s)	119, 197
BstSCI	CCNGG	2 cut(s)	117, 195
BstSFI	CTRYAG	3 cut(s)	186, 282, 294
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	7 cut(s)	263, 266, 268, 284, 287, 290, 308
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	77, 122
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	2 cut(s)	68, 100
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	9 cut(s)	30, 77, 122, 141, 159, 257, 281, 290, 299
CviKI_1	RGCY	9 cut(s)	30, 77, 122, 141, 159, 257, 281, 290, 299
DdeI	CTNAG	2 cut(s)	31, 300
DinI	GGCGCC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco53kI	GAGCTC	2 cut(s)	30, 159
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoRII	CCWGG	2 cut(s)	117, 195
EcoT38I	GRGCYC	2 cut(s)	32, 161
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	1 cut(s)	343
FaiI	YATR	1 cut(s)	341
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 297
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	32, 161
Fsp4HI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 297
GlaI	GCGC	2 cut(s)	67, 99
GluI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 297
GsuI	CTGGAG	2 cut(s)	86, 243
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	77, 122
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	68, 100
Hin1I	GRCGYC	2 cut(s)	66, 150
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	66, 98
HinP1I	GCGC	2 cut(s)	66, 98
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	4, 211
Hpy188III	TCNNGA	4 cut(s)	25, 33, 103, 154
HpyAV	CCTTC	6 cut(s)	25, 96, 189, 241, 301, 313
HpyCH4V	TGCA	4 cut(s)	188, 272, 284, 296
HpyF3I	CTNAG	2 cut(s)	31, 300
Hsp92I	GRCGYC	2 cut(s)	66, 150
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	66, 98
KasI	GGCGCC	1 cut(s)	65
LmnI	GCTCC	7 cut(s)	45, 88, 105, 146, 164, 262, 295
Lsp1109I	GCAGC	7 cut(s)	263, 266, 268, 284, 287, 290, 308
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	48, 125
MboII	GAAGA	4 cut(s)	81, 184, 316, 326
MhlI	GDGCHC	3 cut(s)	32, 85, 161
Mly113I	GGCGCC	1 cut(s)	66
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	2 cut(s)	281, 299
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	119, 197
MvaI	CCWGG	2 cut(s)	119, 197
MvnI	CGCG	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	4 cut(s)	67, 229, 247, 291
NmuCI	GTSAC	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	9 cut(s)	124, 250, 253, 256, 274, 277, 280, 283, 298
PluTI	GGCGCC	1 cut(s)	69
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp6I	CCWGG	2 cut(s)	117, 195
PspGI	CCWGG	2 cut(s)	117, 195
PspN4I	GGNNCC	4 cut(s)	67, 229, 247, 291
PstI	CTGCAG	3 cut(s)	190, 286, 298
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	2 cut(s)	281, 299
SacI	GAGCTC	2 cut(s)	32, 161
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 297
ScrFI	CCNGG	2 cut(s)	119, 197
SduI	GDGCHC	3 cut(s)	32, 85, 161
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	3 cut(s)	186, 282, 294
SfoI	GGCGCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	48, 123, 249
SspDI	GGCGCC	1 cut(s)	65
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	117, 195
TauI	GCSGC	2 cut(s)	125, 251
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 296
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	7, 223
Van91I	CCANNNNNTGG	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.