Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

14128088 .. 14129408

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGTTTTCACCTTCATCGTCAAGAGCTCAGGAGGAGAATGGAGCGGGAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCTCTCTCTTCTGACAGCTCCGGTGGCGTCCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGAATCCAAATTGTGTATCTGACAAGGATCACAGGTCCTTCCTTCCATGGAAGGGAAGTGTATGTGGCCATGAGTTGGATGCTTGTCAATTAAATGTTATAGCCAGTTTCCACCTTGCCCTTCTATTTGGTGGAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.88

Weight (kDa)

5.8

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	48, 123
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	248, 271
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	30, 141, 159
AluI	AGCT	3 cut(s)	30, 141, 159
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	3 cut(s)	75, 120, 262
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BciT130I	CCWGG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	99, 265
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 271
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	2 cut(s)	114, 280
BseLI	CCNNNNNNNGG	2 cut(s)	248, 271
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	77, 122, 264
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	248, 271
BsnI	GGCC	3 cut(s)	77, 122, 264
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	48, 123
BspANI	GGCC	3 cut(s)	77, 122, 264
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	231
BsrBI	CCGCTC	2 cut(s)	48, 125
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	114, 280
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 156
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	77, 122, 264
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	114, 280
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	139
CviAII	CATG	2 cut(s)	243, 266
CviJI	RGCY	7 cut(s)	30, 77, 122, 141, 159, 264, 299
CviKI_1	RGCY	7 cut(s)	30, 77, 122, 141, 159, 264, 299
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco130I	CCWWGG	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	2 cut(s)	30, 159
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	2 cut(s)	32, 161
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	246, 269
FaiI	YATR	4 cut(s)	244, 259, 267, 296
FatI	CATG	2 cut(s)	242, 265
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	121, 287
FriOI	GRGCYC	2 cut(s)	32, 161
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	77, 122, 264
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	246, 269
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	136, 217
Hpy188III	TCNNGA	5 cut(s)	25, 33, 103, 154, 196
HpyAV	CCTTC	7 cut(s)	25, 96, 189, 241, 244, 248, 326
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 156
HpyF3I	CTNAG	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	246, 269
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	5 cut(s)	45, 88, 105, 146, 164
LweI	GCATC	2 cut(s)	99, 265
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	2 cut(s)	48, 125
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	81, 123, 184
MhlI	GDGCHC	3 cut(s)	32, 85, 161
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	205, 284
MluNI	TGGCCA	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	29, 55, 67, 99, 193
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	147, 156
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	246, 269
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	231
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	231
PspPPI	RGGWCCY	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	190
SacI	GAGCTC	2 cut(s)	32, 161
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	32, 85, 161
SetI	ASST	7 cut(s)	17, 32, 72, 143, 161, 233, 312
SfaNI	GCATC	2 cut(s)	99, 265
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	205, 284
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	48, 123
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	242
TasI	AATT	2 cut(s)	205, 284
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.