Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Forward (+)

18545043 .. 18546006

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGAGTGTTCACCTTCGTGTTGAGGACCTCCGGGGGAGAGTGGTCCGCCAAACAGCAGAATGGAGACCTTGAGGCCTCCGCTCCCTCCACATTCGAGCTCCAGAGGAAGCTCGTCCAGTCCGCTCTATCTTCCGAGTCCTCCGGCGGTGTCCAGACCTCGTACTCACCTGTCACTCCCACCTCTGCCGTTTTCCAGGTGATCATTGGTGGTGGTGGTGGTGGTGGCGGTGGTGCCTTCATTGGAGGTGGAGCTGCTGCTGCTGCTCCTGGAGGTGGTGCAGCGGCTGCTGCAGAGGCTCCCCCGGCTGAGGAGAAGAAGGAAGAGAAGGAGGAGAGCGACGATGACATGGGATTCTCTCTTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

124

Amino Acids

12.15

Weight (kDa)

4.29

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	77 - 122	4.5e-11	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccBSI	CCGCTC	2 cut(s)	83, 125
AciI	CCGC	6 cut(s)	48, 81, 123, 147, 228, 284
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	275, 310
AjnI	CCWGG	2 cut(s)	195, 268
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	100, 112, 254
AluI	AGCT	3 cut(s)	100, 112, 254
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	7 cut(s)	254, 257, 260, 263, 281, 287, 290
AspS9I	GGNCC	2 cut(s)	27, 45
AsuC2I	CCSGG	2 cut(s)	34, 305
AsuHPI	GGTGA	3 cut(s)	4, 159, 211
AvaII	GGWCC	2 cut(s)	27, 45
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	7 cut(s)	241, 244, 247, 250, 274, 277, 293
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	197, 270
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	34, 305
BcoDI	GTCTC	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	8 cut(s)	255, 258, 261, 264, 282, 285, 288, 291
BlsI	GCNGC	8 cut(s)	256, 259, 262, 265, 283, 286, 289, 292
Bme1390I	CCNGG	4 cut(s)	34, 197, 270, 305
Bme18I	GGWCC	2 cut(s)	27, 45
BmgT120I	GGNCC	2 cut(s)	27, 45
BmiI	GGNNCC	2 cut(s)	235, 300
BmrFI	CCNGG	4 cut(s)	34, 197, 270, 305
BpmI	CTGGAG	2 cut(s)	86, 291
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	34, 305
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	33, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 310
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	197, 270
BseDI	CCNNGG	2 cut(s)	33, 303
BseLI	CCNNNNNNNGG	2 cut(s)	275, 310
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	326, 347
BseXI	GCAGC	7 cut(s)	241, 244, 247, 250, 274, 277, 293
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	33, 144, 305
BslI	CCNNNNNNNGG	2 cut(s)	275, 310
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	6 cut(s)	48, 81, 123, 147, 228, 284
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	235, 300
BspMAI	CTGCAG	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	83, 125
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	33, 303
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	197, 270
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 263, 287, 290, 296, 305
BstNI	CCWGG	2 cut(s)	197, 270
BstSCI	CCNGG	4 cut(s)	32, 195, 268, 303
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	7 cut(s)	241, 244, 247, 250, 274, 277, 293
BsuRI	GGCC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	27, 45
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	7 cut(s)	77, 100, 112, 254, 287, 299, 308
CviKI_1	RGCY	7 cut(s)	77, 100, 112, 254, 287, 299, 308
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	27, 45
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	195, 268
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	352
FaiI	YATR	1 cut(s)	350
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	8 cut(s)	255, 258, 261, 264, 282, 285, 288, 291
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	255, 258, 261, 264, 282, 285, 288, 291
GluI	GCNGC	8 cut(s)	255, 258, 261, 264, 282, 285, 288, 291
GsuI	CTGGAG	2 cut(s)	86, 291
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	3 cut(s)	33, 144, 305
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	2 cut(s)	137, 354
HpaII	CCGG	3 cut(s)	33, 144, 305
HphI	GGTGA	3 cut(s)	4, 159, 211
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	103, 154
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	4 cut(s)	25, 247, 313, 322
HpyCH4V	TGCA	2 cut(s)	281, 293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 263, 287, 290, 296, 305
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	5 cut(s)	88, 105, 251, 271, 304
Lsp1109I	GCAGC	7 cut(s)	241, 244, 247, 250, 274, 277, 293
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	203
MbiI	CCGCTC	2 cut(s)	83, 125
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	123, 328, 335
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	370
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	33, 144, 305
MspR9I	CCNGG	4 cut(s)	34, 197, 270, 305
MvaI	CCWGG	2 cut(s)	197, 270
MwoI	GCNNNNNNNGC	6 cut(s)	260, 263, 287, 290, 296, 305
NciI	CCSGG	2 cut(s)	34, 305
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	235, 300
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	354
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	8 cut(s)	256, 259, 262, 265, 283, 286, 289, 292
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	195, 268
PspGI	CCWGG	2 cut(s)	195, 268
PspN4I	GGNNCC	2 cut(s)	235, 300
PspPI	GGNCC	2 cut(s)	27, 45
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	8 cut(s)	255, 258, 261, 264, 282, 285, 288, 291
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	27, 45
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	34, 197, 270, 305
SduI	GDGCHC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	27, 45
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	6 cut(s)	48, 81, 123, 147, 228, 284
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	32, 195, 268, 303
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	354
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	254, 257, 260, 263, 281, 287, 290
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	27, 45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.