Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

17904471 .. 17905937

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAGTTTTCACCTTCATCGTCAAGAGCTCAGGAGGAGAATGGAGCGGGAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCGCTCCAGAGGATGCTCGTCCAGGCCGCTCTCGCTTCTGACAGCTCCGGTGGCGTCCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGGTGATTATTGGTGGTGGTGGAGGTGGTGGTGCCTTCATTGGTGGAGGTGCCGCAGCAGCTCCAGCAGGTGGTGCAGCAGCAGCTGCTGCTGAGGCTCCCGTGGCTGAGAAGAAGGAGGAAGAGAAGGAGGAGAGTGATGATGACATGGGATTCTCTCTCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

121

Amino Acids

11.93

Weight (kDa)

4.15

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	72 - 120	3.8e-12	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	227, 245
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	48, 123, 249
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	117, 195
AluBI	AGCT	5 cut(s)	30, 141, 159, 257, 281
AluI	AGCT	5 cut(s)	30, 141, 159, 257, 281
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
AlwNI	CAGNNNCTG	2 cut(s)	281, 284
AoxI	GGCC	2 cut(s)	75, 120
ApeKI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 284
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	4, 211
BanI	GGYRCC	2 cut(s)	227, 245
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	7 cut(s)	263, 266, 268, 271, 284, 287, 290
BciT130I	CCWGG	2 cut(s)	119, 197
BfmI	CTRYAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 285
BlsI	GCNGC	9 cut(s)	124, 250, 253, 256, 274, 277, 280, 283, 286
Bme1390I	CCNGG	2 cut(s)	119, 197
BmiI	GGNNCC	3 cut(s)	229, 247, 294
BmrFI	CCNGG	2 cut(s)	119, 197
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	86, 243
Bpu10I	CCTNAGC	2 cut(s)	31, 288
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	119, 197
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	45, 279, 294
BseRI	GAGGAG	2 cut(s)	51, 341
BseXI	GCAGC	7 cut(s)	263, 266, 268, 271, 284, 287, 290
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	77, 122
BshNI	GGYRCC	2 cut(s)	227, 245
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	2 cut(s)	77, 122
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
BspACI	CCGC	3 cut(s)	48, 123, 249
BspANI	GGCC	2 cut(s)	77, 122
BspCNI	CTCAG	3 cut(s)	44, 280, 295
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	229, 247, 294
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	227, 245
BsrBI	CCGCTC	2 cut(s)	48, 125
BssECI	CCNNGG	1 cut(s)	297
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	119, 197
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	3 cut(s)	269, 281, 284
BstDEI	CTNAG	3 cut(s)	31, 288, 303
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	119, 197
BstSCI	CCNGG	2 cut(s)	117, 195
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	7 cut(s)	263, 266, 268, 271, 284, 287, 290
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	77, 122
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	254
CaiI	CAGNNNCTG	2 cut(s)	281, 284
CfoI	GCGC	1 cut(s)	100
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	9 cut(s)	30, 77, 122, 141, 159, 257, 281, 293, 302
CviKI_1	RGCY	9 cut(s)	30, 77, 122, 141, 159, 257, 281, 293, 302
DdeI	CTNAG	3 cut(s)	31, 288, 303
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco53kI	GAGCTC	2 cut(s)	30, 159
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoRII	CCWGG	2 cut(s)	117, 195
EcoT38I	GRGCYC	2 cut(s)	32, 161
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 285
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	32, 161
Fsp4HI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 285
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 285
GsuI	CTGGAG	2 cut(s)	86, 243
HaeIII	GGCC	2 cut(s)	77, 122
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	4, 211
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	25, 33, 103, 154
HpyAV	CCTTC	6 cut(s)	25, 96, 189, 241, 304, 316
HpyCH4V	TGCA	2 cut(s)	188, 272
HpyF3I	CTNAG	3 cut(s)	31, 288, 303
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	7 cut(s)	45, 88, 105, 146, 164, 262, 298
Lsp1109I	GCAGC	7 cut(s)	263, 266, 268, 271, 284, 287, 290
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	48, 125
MboII	GAAGA	4 cut(s)	81, 184, 319, 329
MhlI	GDGCHC	3 cut(s)	32, 85, 161
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	119, 197
MvaI	CCWGG	2 cut(s)	119, 197
MvnI	CGCG	1 cut(s)	98
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	229, 247, 294
NmuCI	GTSAC	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	9 cut(s)	124, 250, 253, 256, 274, 277, 280, 283, 286
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp6I	CCWGG	2 cut(s)	117, 195
PspGI	CCWGG	2 cut(s)	117, 195
PspN4I	GGNNCC	3 cut(s)	229, 247, 294
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	2 cut(s)	281, 284
PvuII	CAGCTG	1 cut(s)	281
SacI	GAGCTC	2 cut(s)	32, 161
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	9 cut(s)	123, 249, 252, 255, 273, 276, 279, 282, 285
ScrFI	CCNGG	2 cut(s)	119, 197
SduI	GDGCHC	3 cut(s)	32, 85, 161
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	48, 123, 249
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	117, 195
TauI	GCSGC	2 cut(s)	125, 251
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	251, 254, 272, 275, 278, 281, 284
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	7, 223
Van91I	CCANNNNNTGG	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.