Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008579

Physical Location & Seq

Genomic Coordinates Reverse (-)

16601021 .. 16601958

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG097400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGAGTTTTCACCTTCGTCGTCAAGAGCTCAGGAGGAGAATGGAGCGGGAAGCAATACGAGGGCGACCTTGAGGCCTGTGCTCCTTCTTCCTACGCACTCCAGAGGATGCTCGTCCAGGCCGCTCTCGCTTCTGACAGCTCCGGTGGCGTTCAGAGCTCCTACTCTCCCGTCACTCCTTCCTCTGCAGTCTTCCAGCAGGTGGTGCAGCAGCAGCTGCAGAGGCTCCCGCGGCTGAGAAGAAGGAGGAAGAGAAGGAGGAGAGTGATGATGACATGGGATTCTCCCTCTTTGATTAAGTCTAGTCATATAATATGTCCTTTAGTTTTTCTAGTCTCCCCCCCTGTTCAATTTGCATCTAATGTTGGATCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0016020 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

125

Amino Acids

13.79

Weight (kDa)

10.61

Isoelectric Point (pI)

96.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25890 AT5G57290 AT5G57290 AT5G57290
fragaria_vesca	FvH4_4g07630
malus_domestica	MD13G1245200.v1.1 MD16G1253100.v1.1
prunus_persica	Prupe.1G079500_v2.0.a1
pyrus_communis	pycom13g21620 pycom16g21450
rosa_chinensis	RchiOBHm_Chr1g0341131 RchiOBHm_Chr4g0400241
rosa_laevigata	RLG00000009201
rosa_multiflora	Rmu_sc0004338.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032730 Rroxscaffold_5G00345200
rosa_rugosa	Rorug04G0024100 Rorug04G0024100
rosa_samantha	Rh4AG099100 Rh4BG097400 Rh4CG108700 Rh4DG094100
rosa_wichuraiana	Rw4G008250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccBSI	CCGCTC	2 cut(s)	48, 125
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	48, 123, 230, 232
AclWI	GGATC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	30, 141, 159, 217
AluI	AGCT	4 cut(s)	30, 141, 159, 217
Alw21I	GWGCWC	3 cut(s)	32, 85, 161
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	2 cut(s)	75, 120
ApeKI	GCWGC	4 cut(s)	208, 211, 214, 217
AsuHPI	GGTGA	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	32, 161
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	3 cut(s)	32, 85, 161
BbvI	GCAGC	4 cut(s)	204, 220, 223, 226
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	303, 332
BfmI	CTRYAG	2 cut(s)	186, 218
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	6 cut(s)	123, 209, 212, 215, 218, 233
BlsI	GCNGC	6 cut(s)	124, 210, 213, 216, 219, 234
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	99, 365
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	45, 227
BseRI	GAGGAG	2 cut(s)	51, 274
BseXI	GCAGC	4 cut(s)	204, 220, 223, 226
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	77, 122
BsiHKAI	GWGCWC	3 cut(s)	32, 85, 161
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	77, 122
Bsp1286I	GDGCHC	3 cut(s)	32, 85, 161
Bsp143I	GATC	1 cut(s)	368
BspACI	CCGC	4 cut(s)	48, 123, 230, 232
BspANI	GGCC	2 cut(s)	77, 122
BspCNI	CTCAG	2 cut(s)	44, 228
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	2 cut(s)	190, 222
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	48, 125
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	245
BstAPI	GCANNNNNTGC	2 cut(s)	205, 217
BstDEI	CTNAG	2 cut(s)	31, 236
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 147, 156, 205, 214, 217, 223, 232
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	186, 218
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	204, 220, 223, 226
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	77, 122
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr42I	CCGCGG	1 cut(s)	233
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	8 cut(s)	30, 77, 122, 141, 159, 217, 226, 235
CviKI_1	RGCY	8 cut(s)	30, 77, 122, 141, 159, 217, 226, 235
DdeI	CTNAG	2 cut(s)	31, 236
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	2 cut(s)	30, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	32, 161
Eco53kI	GAGCTC	2 cut(s)	30, 159
EcoICRI	GAGCTC	2 cut(s)	30, 159
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	32, 161
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	277, 309, 311, 316
FatI	CATG	1 cut(s)	275
FauI	CCCGC	2 cut(s)	41, 237
Fnu4HI	GCNGC	6 cut(s)	123, 209, 212, 215, 218, 233
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	32, 161
Fsp4HI	GCNGC	6 cut(s)	123, 209, 212, 215, 218, 233
FspBI	CTAG	2 cut(s)	303, 332
GluI	GCNGC	6 cut(s)	123, 209, 212, 215, 218, 233
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	77, 122
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	136, 156
Hpy188III	TCNNGA	3 cut(s)	25, 33, 103
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	25, 96, 189, 237, 249
HpyCH4V	TGCA	4 cut(s)	188, 208, 220, 356
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 147, 156, 205, 214, 217, 223, 232
HpyF3I	CTNAG	2 cut(s)	31, 236
Hsp92II	CATG	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	5 cut(s)	45, 88, 146, 164, 231
LpnPI	CCDG	9 cut(s)	18, 91, 104, 116, 131, 157, 185, 209, 357
Lsp1109I	GCAGC	4 cut(s)	204, 220, 223, 226
LweI	GCATC	2 cut(s)	99, 365
MaeI	CTAG	2 cut(s)	303, 332
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	370
MbiI	CCGCTC	2 cut(s)	48, 125
MboI	GATC	1 cut(s)	368
MboII	GAAGA	4 cut(s)	81, 184, 252, 262
MhlI	GDGCHC	3 cut(s)	32, 85, 161
MluCI	AATT	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	29, 55, 67, 99, 193, 216, 240, 252, 298
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	217, 232
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	8 cut(s)	128, 147, 156, 205, 214, 217, 223, 232
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	124, 210, 213, 216, 219, 234
Psp124BI	GAGCTC	2 cut(s)	32, 161
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	227
PstI	CTGCAG	2 cut(s)	190, 222
PstNI	CAGNNNCTG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	217
SacI	GAGCTC	2 cut(s)	32, 161
SacII	CCGCGG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	6 cut(s)	123, 209, 212, 215, 218, 233
Sau3AI	GATC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	32, 85, 161
SetI	ASST	7 cut(s)	17, 32, 72, 143, 161, 204, 219
SfaNI	GCATC	2 cut(s)	99, 365
SfcI	CTRYAG	2 cut(s)	186, 218
Sfr303I	CCGCGG	1 cut(s)	233
SgrBI	CCGCGG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	350
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	48, 123, 230, 232
SspMI	CTAG	2 cut(s)	303, 332
SstI	GAGCTC	2 cut(s)	32, 161
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	117
TasI	AATT	1 cut(s)	350
TauI	GCSGC	2 cut(s)	125, 235
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	4 cut(s)	208, 211, 214, 217
Tsp45I	GTSAC	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	303, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.