Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Forward (+)

26659177 .. 26665316

Gene Structure 6140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1251100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGAAAACAATCAGGCAAGAACCCAGGATTTGGAAAACGCAAAATACCCAACAAGTTCAACACGAGCAAGAAAAGTCATCGTCTTGAAGAAGAAAATGTTGCACACAGCCCTGCGACTACTTCGTCAGGGGAACTACCAAACGAAGAATCTAACTGTGTGGTTTCCGAAGAAGAAATGGTTTATAAGGAGCCATCCATGTATGATAAATTGTTAATGACGCTGGGATCATCTAGTAAATCTGTTTCTGCTGCATATAAGATGAGAAAAAGACAAGAAGAAGGTCTAAGTGACTCAGAAAATTCTGAAGATGATGGAACTGAATCTTCTAGTGACTCAGAGGATGCGGATGATGACGAAGAAGGAGTTGATGATGAATTTCCTATGGAAGGAAAACCCAAAGACCCTGAAAAGGCAGGACTTGAGGAGCACGGTGAAGATTCTGAAAATAAGGATGACCAGGAGACCTTTGACTTGGATGACCAAGAGACCTCTAACTCAGATGACCAAGAGACTCATGATTCAGATGCAGAACAGGACCTGGGAACCAGTTCTCAATCTGCTGTTGAACCATCAATGTGCTTGAGTTCCTTTGATATACACTTGGGGCACAAGTTAACAAAAGCTGAGGTTGAAAATCTTTCAAAAAAGATGTGGATATATGATTGGGAGGTGCCTGCTGTTGGGATGACGAAGGGCAAGTGGGCAGGAACAGGAGAGTGTTTTACAAAAGTATTCAACAGCTATCGGGATATATTGCATTGCAACAAAAAACCCTTTTATCACAGAGCCTCTGAAGAAGACTCAAATGTCATGGGTGCATACATGATGCAGTGTCTGAATCATGTCTTCAAAACTAGAGATCTTGTAACGAAGAATGATGCAAAAGTGTCCAAGCTTCGAGAAACTGCTTGTAATGAAATTCTTATTGATGATAGTTTCCTTGATCATGGATTTACTCGTTCTTGTGATAAATACTGGACTTGGATTCCTTATAACAATGTATATCCATTTTATAACGTCATTCATATAATAGTATATATTCTTTTTTTGTACAAGCCATGTAGTGTATATCTTGTTTGCGGTCCTATATGGCCTCTGTGTTTTAAATTTAGGCACACTTGGTTCGGTGACTGTGAACTACTTTCTATTTATTGTAGCTGTTGCAATTTGATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

394

Amino Acids

44.7

Weight (kDa)

4.72

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP25_NTPase-like	PF22916	249 - 322	3.5e-11	UTP25, NTP hydrolase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	186, 996, 1017
AasI	GACNNNNNNGTC	2 cut(s)	124, 809
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	2 cut(s)	347, 1083
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	4 cut(s)	301, 377, 921, 1109
AcuI	CTGAAG	2 cut(s)	327, 816
AfaI	GTAC	1 cut(s)	1055
AfiI	CCNNNNNNNGG	4 cut(s)	32, 389, 412, 683
AgsI	TTSAA	7 cut(s)	61, 89, 569, 635, 645, 739, 853
AjnI	CCWGG	3 cut(s)	25, 459, 540
AluBI	AGCT	4 cut(s)	626, 744, 898, 1161
AluI	AGCT	4 cut(s)	626, 744, 898, 1161
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	3 cut(s)	458, 482, 506
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	541, 838
AoxI	GGCC	1 cut(s)	1094
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	4 cut(s)	301, 377, 921, 1109
Asp700I	GAANNNNTTC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	538, 1085
AsuHPI	GGTGA	2 cut(s)	446, 1142
AvaII	GGWCC	2 cut(s)	538, 1085
BaeGI	GKGCMC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	64
BbsI	GAAGAC	2 cut(s)	807, 841
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	202, 308, 580
BciT130I	CCWGG	3 cut(s)	27, 461, 542
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	3 cut(s)	458, 482, 506
BfaI	CTAG	3 cut(s)	234, 330, 858
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	27, 461, 542
Bme18I	GGWCC	2 cut(s)	538, 1085
BmgT120I	GGNCC	2 cut(s)	538, 1085
BmiI	GGNNCC	3 cut(s)	192, 547, 675
BmrFI	CCNGG	3 cut(s)	27, 461, 542
BmsI	GCATC	4 cut(s)	334, 517, 819, 871
BpiI	GAAGAC	2 cut(s)	807, 841
Bpu10I	CCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	443, 604
BsaI	GGTCTC	2 cut(s)	458, 482
BsaJI	CCNNGG	2 cut(s)	25, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 389, 412, 683
Bse1I	ACTGG	2 cut(s)	549, 983
Bse3DI	GCAATG	1 cut(s)	760
BseBI	CCWGG	3 cut(s)	27, 461, 542
BseDI	CCNNGG	2 cut(s)	25, 541
BseGI	GGATG	6 cut(s)	194, 349, 355, 460, 484, 693
BseLI	CCNNNNNNNGG	4 cut(s)	32, 389, 412, 683
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	4 cut(s)	309, 351, 513, 618
BseNI	ACTGG	2 cut(s)	549, 983
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	1096
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	432
BslI	CCNNNNNNNGG	4 cut(s)	32, 389, 412, 683
BsmAI	GTCTC	3 cut(s)	458, 482, 506
BsnI	GGCC	1 cut(s)	1096
Bso31I	GGTCTC	2 cut(s)	458, 482
Bsp1286I	GDGCHC	2 cut(s)	432, 612
Bsp1407I	TGTACA	1 cut(s)	1053
Bsp143I	GATC	3 cut(s)	227, 862, 946
BspACI	CCGC	2 cut(s)	347, 1083
BspANI	GGCC	1 cut(s)	1096
BspCNI	CTCAG	4 cut(s)	308, 350, 512, 619
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	192, 547, 675
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	2 cut(s)	458, 482
BsrDI	GCAATG	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	1053
BsrI	ACTGG	2 cut(s)	549, 983
BssECI	CCNNGG	2 cut(s)	25, 541
BssMI	GATC	3 cut(s)	227, 862, 946
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	3 cut(s)	27, 461, 542
Bst4CI	ACNGT	3 cut(s)	158, 434, 1136
BstAUI	TGTACA	1 cut(s)	1053
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	5 cut(s)	287, 295, 337, 499, 627
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	6 cut(s)	194, 349, 355, 460, 484, 693
BstKTI	GATC	3 cut(s)	230, 865, 949
BstMAI	GTCTC	3 cut(s)	458, 482, 506
BstMBI	GATC	3 cut(s)	227, 862, 946
BstNI	CCWGG	3 cut(s)	27, 461, 542
BstSCI	CCNGG	3 cut(s)	25, 459, 540
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	2 cut(s)	807, 841
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	1096
BtsCI	GGATG	6 cut(s)	194, 349, 355, 460, 484, 693
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	1 cut(s)	839
Cac8I	GCNNGC	1 cut(s)	678
CaiI	CAGNNNCTG	2 cut(s)	541, 838
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	538, 1085
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	1054
CviAII	CATG	7 cut(s)	199, 518, 814, 826, 845, 950, 1062
CviJI	RGCY	9 cut(s)	111, 193, 626, 744, 791, 898, 1060, 1096, 1161
CviKI_1	RGCY	9 cut(s)	111, 193, 626, 744, 791, 898, 1060, 1096, 1161
CviQI	GTAC	1 cut(s)	1054
DdeI	CTNAG	5 cut(s)	287, 295, 337, 499, 627
DpnI	GATC	3 cut(s)	229, 864, 948
DpnII	GATC	3 cut(s)	227, 862, 946
DraI	TTTAAA	1 cut(s)	1108
DrdI	GACNNNNNNGTC	2 cut(s)	124, 809
DseDI	GACNNNNNNGTC	2 cut(s)	124, 809
Eco31I	GGTCTC	2 cut(s)	458, 482
Eco47I	GGWCC	2 cut(s)	538, 1085
Eco57I	CTGAAG	2 cut(s)	327, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	25, 459, 540
FaeI	CATG	7 cut(s)	202, 521, 817, 829, 848, 953, 1065
FatI	CATG	7 cut(s)	198, 517, 813, 825, 844, 949, 1061
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	6 cut(s)	181, 356, 362, 467, 491, 700
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	234, 330, 858
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	1096
HgaI	GACGC	1 cut(s)	229
Hin1II	CATG	7 cut(s)	202, 521, 817, 829, 848, 953, 1065
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	896
HpaI	GTTAAC	1 cut(s)	618
HphI	GGTGA	2 cut(s)	446, 1142
Hpy166II	GTNNAC	2 cut(s)	618, 1139
Hpy188I	TCNGA	9 cut(s)	169, 298, 307, 340, 445, 502, 526, 796, 840
Hpy188III	TCNNGA	4 cut(s)	86, 518, 749, 902
Hpy8I	GTNNAC	2 cut(s)	618, 1139
HpyAV	CCTTC	4 cut(s)	275, 356, 383, 688
HpyCH4III	ACNGT	3 cut(s)	158, 434, 1136
HpyCH4IV	ACGT	1 cut(s)	1020
HpyCH4V	TGCA	9 cut(s)	104, 254, 530, 760, 765, 821, 832, 884, 1167
HpyF3I	CTNAG	5 cut(s)	287, 295, 337, 499, 627
HpySE526I	ACGT	1 cut(s)	1020
Hsp92II	CATG	7 cut(s)	202, 521, 817, 829, 848, 953, 1065
Ksp22I	TGATCA	1 cut(s)	946
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	227, 862, 946
LmnI	GCTCC	2 cut(s)	190, 427
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	4 cut(s)	334, 517, 819, 871
MaeI	CTAG	3 cut(s)	234, 330, 858
MaeII	ACGT	1 cut(s)	1020
MaeIII	GTNAC	4 cut(s)	290, 332, 868, 1130
MalI	GATC	3 cut(s)	229, 864, 948
MboI	GATC	3 cut(s)	227, 862, 946
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	432, 612
MluCI	AATT	6 cut(s)	209, 301, 377, 921, 1109, 1168
MlyI	GAGTC	4 cut(s)	287, 329, 508, 797
MnlI	CCTC	7 cut(s)	334, 418, 502, 622, 664, 802, 1107
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	3 cut(s)	215, 617, 1107
MslI	CAYNNNNRTG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	27, 461, 542
MvaI	CCWGG	3 cut(s)	27, 461, 542
NdeII	GATC	3 cut(s)	227, 862, 946
NlaIII	CATG	7 cut(s)	202, 521, 817, 829, 848, 953, 1065
NlaIV	GGNNCC	3 cut(s)	192, 547, 675
NmuCI	GTSAC	3 cut(s)	290, 332, 1130
PagI	TCATGA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	6 cut(s)	149, 323, 440, 521, 841, 988
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	4 cut(s)	287, 329, 508, 797
PpsI	GAGTC	4 cut(s)	287, 329, 508, 797
PpuMI	RGGWCCY	1 cut(s)	538
PsiI	TTATAA	3 cut(s)	186, 996, 1017
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	25, 459, 540
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	25, 459, 540
PspN4I	GGNNCC	3 cut(s)	192, 547, 675
PspPI	GGNCC	2 cut(s)	538, 1085
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	2 cut(s)	541, 838
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	1 cut(s)	1055
RsaNI	GTAC	1 cut(s)	1054
RseI	CAYNNNNRTG	1 cut(s)	577
SaqAI	TTAA	3 cut(s)	215, 617, 1107
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	227, 862, 946
Sau96I	GGNCC	2 cut(s)	538, 1085
SchI	GAGTC	4 cut(s)	287, 329, 508, 797
ScrFI	CCNGG	3 cut(s)	27, 461, 542
SduI	GDGCHC	2 cut(s)	432, 612
SfaNI	GCATC	4 cut(s)	334, 517, 819, 871
SinI	GGWCC	2 cut(s)	538, 1085
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	422, 583
SmoI	CTYRAG	2 cut(s)	422, 583
Sse9I	AATT	6 cut(s)	209, 301, 377, 921, 1109, 1168
SsiI	CCGC	2 cut(s)	347, 1083
SspMI	CTAG	3 cut(s)	234, 330, 858
StyD4I	CCNGG	3 cut(s)	25, 459, 540
TaaI	ACNGT	3 cut(s)	158, 434, 1136
TaiI	ACGT	1 cut(s)	1023
TaqI	TCGA	1 cut(s)	901
TasI	AATT	6 cut(s)	209, 301, 377, 921, 1109, 1168
TatI	WGTACW	1 cut(s)	1053
TfiI	GAWTC	6 cut(s)	149, 323, 440, 521, 841, 988
Tru1I	TTAA	3 cut(s)	215, 617, 1107
Tru9I	TTAA	3 cut(s)	215, 617, 1107
TscAI	CASTG	1 cut(s)	839
TseFI	GTSAC	3 cut(s)	290, 332, 1130
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	3 cut(s)	290, 332, 1130
TspDTI	ATGAA	3 cut(s)	390, 933, 1016
TspRI	CASTG	1 cut(s)	839
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	2 cut(s)	538, 1085
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	4 cut(s)	301, 377, 921, 1109
XmnI	GAANNNNTTC	1 cut(s)	550
XspI	CTAG	3 cut(s)	234, 330, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.