MD13G1251200.v1.1

U3 small nucleolar RNA-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
26670376 .. 26682367
11992 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1251200.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGTATGAATACATCTACATTAATATTTCTGAGTTTTACTTGCATTCTCATAATCATCTTTATCTATCAATTAATGAGGGTTTAGTTGAATCTCCGTGGTTTGCTCCCATGTGGTCTGGGGTTCAATTCCTCAAGGTAGCTATTTACTATTCACTATATGTTAATGTGGAGCACATGGATCGATTTTCTAGAGAGTTTGGAACCGATGACAACGAGGACGAAAAAGAGAAAACACCAGCTGGCCAGGACCTGGAAATTGTAAGACCTCATAAGTTGTCAAAGCCTAGTGATTTTCAAGTACTTTTTGGAGGAAATAGCAAGGATGACTTCATGGTTGGCATCAAGTTCACTAAGAGGAGCATAAAGTTGTACAGTGATTTCTATACCTCAGATATGATAGTTGCTTCTTCAGTTGGTTTGTTGAAAAAAATTGATGAGGCTAAATTAAACAAAGAAAAGGATGTCGACTATCTTTCTTCCATAGAGGTTCTAGTTATTGATCATGCAGATGTTGTAACGATGCAGAACTGGGACTTTTTGAAGTCTGCTGTTGAACAGTTGAACCGCATACCATCTAAGCAGCATGGGACTGATGTCATGCGGATAAGACCGTGGTACCTGGATGGATGTGCACATTTCTATAGGCAAACAATACTCTTGAGTTATTATTCAAATCCGGATATAAACAATTTGTTCAGCAAGCACTGTAATAATTACCATGGGAAGGTGAAGCTGGTACATGAACATAAAGGAGTTCTTCCTAAAGTGATACTTCAAGTCCGCCAGATTTATCAGCGGTTTGATGCAGATTCGATACAACATATTGATGATGCTTGTTTTGAATATTTTACTACAAAGGTCTTCCCAAAGATAAAAGATTCTGTTGAGGGTGGGATTATGATATTTATCAGTTCTTACTTTGAATATGTTCGAGTTCGGAACTTTTTGAAGTCACAGAGTGCGTCCTTCTGTTTACTTCATGAATATGCAGAGCAGAGTGATATTTCTCGTGCATGGGTTTGGTTCTTTGAAGGAAAGCGGAAGATAATGCTTTACACTGAGAGATCACATTTTTACCACAGATATAAGATTCGTGCCATTCAGAATTTAGTCATATATTCTCTGCCTGAGAGAAAGGAATTTTACCCTGAGGTTGTTAATATGCTTGATGGGTCCAATGACATGGCATGCACGGTGCTCTTTTCTCAATTTGATCTCCTTCGGCTCGAGAGAATTGTGGGATTTGCTTCAGCGAAGAGAATGTTGACATCGAAAATGAAAATGTTTTCTTTCTCTTGA

Protein Analysis

433

Amino Acids

50.87

Weight (kDa)

6.97

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP25_NTPase-like PF22916 55 - 243 3.3e-71 UTP25, NTP hydrolase-like domain
Utp25_C PF06862 254 - 431 6.2e-60 Utp25, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 615
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 5 cut(s) 565, 601, 781, 796, 1039
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 2 cut(s) 1105, 1139
AcuI CTGAAG 2 cut(s) 393, 1233
AdeI CACNNNGTG 1 cut(s) 959
AfaI GTAC 4 cut(s) 300, 371, 617, 738
AfiI CCNNNNNNNGG 2 cut(s) 250, 724
AjnI CCWGG 3 cut(s) 243, 249, 618
AluBI AGCT 3 cut(s) 140, 239, 733
AluI AGCT 3 cut(s) 140, 239, 733
Alw21I GWGCWC 3 cut(s) 174, 634, 1200
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 1226
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 1 cut(s) 241
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 1 cut(s) 580
ApoI RAATTY 2 cut(s) 1105, 1139
AseI ATTAAT 2 cut(s) 21, 72
Asp700I GAANNNNTTC 1 cut(s) 927
Asp718I GGTACC 1 cut(s) 615
AspS9I GGNCC 2 cut(s) 247, 1173
AsuHPI GGTGA 1 cut(s) 739
AvaI CYCGRG 1 cut(s) 1226
AvaII GGWCC 2 cut(s) 247, 1173
AxyI CCTNAGG 1 cut(s) 1149
BaeGI GKGCMC 1 cut(s) 634
BaeI ACNNNNGTAYC 2 cut(s) 599, 632
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 615
BauI CACGAG 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 853
Bbv12I GWGCWC 3 cut(s) 174, 634, 1200
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 580, 617, 1163
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 3 cut(s) 245, 251, 620
BclI TGATCA 1 cut(s) 499
BfaI CTAG 3 cut(s) 189, 285, 491
BfmI CTRYAG 1 cut(s) 640
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
BmcAI AGTACT 1 cut(s) 300
Bme1390I CCNGG 3 cut(s) 245, 251, 620
Bme18I GGWCC 2 cut(s) 247, 1173
BmeT110I CYCGRG 1 cut(s) 1226
BmgT120I GGNCC 2 cut(s) 247, 1173
BmiI GGNNCC 3 cut(s) 202, 617, 1174
BmrFI CCNGG 3 cut(s) 245, 251, 620
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 4 cut(s) 348, 510, 793, 820
BmuI ACTGGG 1 cut(s) 538
BoxI GACNNNNGTC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 116, 679
Bsa29I ATCGAT 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 905
BsaJI CCNNGG 3 cut(s) 95, 611, 718
BsaWI WCCGGW 1 cut(s) 676
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 724
Bse1I ACTGG 1 cut(s) 533
Bse21I CCTNAGG 1 cut(s) 1149
Bse8I GATNNNNATC 1 cut(s) 905
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 3 cut(s) 245, 251, 620
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 95, 611, 718
BseGI GGATG 4 cut(s) 328, 466, 628, 632
BseJI GATNNNNATC 1 cut(s) 905
BseLI CCNNNNNNNGG 2 cut(s) 250, 724
BseMII CTCAG 5 cut(s) 21, 402, 1050, 1119, 1140
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 1 cut(s) 592
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 615
BshVI ATCGAT 1 cut(s) 181
BsiHKAI GWGCWC 3 cut(s) 174, 634, 1200
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 2 cut(s) 545, 601
BslI CCNNNNNNNGG 2 cut(s) 250, 724
BsmFI GGGAC 2 cut(s) 545, 601
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 174, 634, 1200
Bsp13I TCCGGA 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 4 cut(s) 178, 499, 1064, 1213
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 5 cut(s) 565, 601, 781, 796, 1039
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 5 cut(s) 22, 401, 1051, 1120, 1141
BspDI ATCGAT 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 676
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 3 cut(s) 202, 617, 1174
BspPI GGATC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 3 cut(s) 95, 611, 718
BssMI GATC 4 cut(s) 178, 499, 1064, 1213
BssSI CACGAG 1 cut(s) 1008
BssT1I CCWWGG 1 cut(s) 718
Bst2BI CACGAG 1 cut(s) 1008
Bst2UI CCWGG 3 cut(s) 245, 251, 620
Bst4CI ACNGT 5 cut(s) 374, 558, 612, 707, 1195
Bst6I CTCTTC 1 cut(s) 1250
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 241, 701, 1189
BstDEI CTNAG 7 cut(s) 30, 351, 388, 576, 1059, 1128, 1149
BstDSI CCRYGG 3 cut(s) 95, 611, 718
BstF5I GGATG 4 cut(s) 328, 466, 628, 632
BstKTI GATC 4 cut(s) 181, 502, 1067, 1216
BstMBI GATC 4 cut(s) 178, 499, 1064, 1213
BstNI CCWGG 3 cut(s) 245, 251, 620
BstNSI RCATGY 1 cut(s) 1191
BstPAI GACNNNNGTC 1 cut(s) 593
BstSCI CCNGG 3 cut(s) 243, 249, 618
BstSFI CTRYAG 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 853
BstXI CCANNNNNNTGG 1 cut(s) 1183
Bsu15I ATCGAT 1 cut(s) 181
Bsu36I CCTNAGG 1 cut(s) 1149
BsuRI GGCC 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 181
BtgI CCRYGG 3 cut(s) 95, 611, 718
BtsCI GGATG 4 cut(s) 328, 466, 628, 632
BtsIMutI CAGTG 3 cut(s) 379, 703, 1056
Cac8I GCNNGC 3 cut(s) 241, 701, 1189
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 979
Cfr13I GGNCC 2 cut(s) 247, 1173
ClaI ATCGAT 1 cut(s) 181
CseI GACGC 1 cut(s) 951
Csp6I GTAC 4 cut(s) 299, 370, 616, 737
CviJI RGCY 7 cut(s) 140, 239, 243, 283, 440, 733, 1225
CviKI_1 RGCY 7 cut(s) 140, 239, 243, 283, 440, 733, 1225
CviQI GTAC 4 cut(s) 299, 370, 616, 737
DdeI CTNAG 7 cut(s) 30, 351, 388, 576, 1059, 1128, 1149
DpnI GATC 4 cut(s) 180, 501, 1066, 1215
DpnII GATC 4 cut(s) 178, 499, 1064, 1213
DraIII CACNNNGTG 1 cut(s) 959
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 1250
EarI CTCTTC 1 cut(s) 1250
EciI GGCGGA 1 cut(s) 770
Eco130I CCWWGG 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 247, 1173
Eco57I CTGAAG 2 cut(s) 393, 1233
Eco81I CCTNAGG 1 cut(s) 1149
Eco88I CYCGRG 1 cut(s) 1226
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 243, 249, 618
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
FalI AAGNNNNNCTT 6 cut(s) 311, 343, 741, 773, 756, 788
FaqI GGGAC 2 cut(s) 545, 601
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 4 cut(s) 335, 473, 635, 639
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 3 cut(s) 189, 285, 491
GluI GCNGC 1 cut(s) 581
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 677
HgaI GACGC 1 cut(s) 951
HincII GTYRAC 2 cut(s) 466, 1266
HindII GTYRAC 2 cut(s) 466, 1266
HinfI GANTC 4 cut(s) 89, 809, 878, 1090
HpaII CCGG 1 cut(s) 677
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 5 cut(s) 348, 466, 632, 974, 1266
Hpy188I TCNGA 4 cut(s) 31, 391, 939, 1104
Hpy188III TCNNGA 6 cut(s) 189, 658, 677, 980, 1228, 1296
Hpy8I GTNNAC 5 cut(s) 348, 466, 632, 974, 1266
HpyAV CCTTC 4 cut(s) 718, 976, 1025, 1229
HpyCH4III ACNGT 5 cut(s) 374, 558, 612, 707, 1195
HpyCH4V TGCA 8 cut(s) 43, 506, 523, 632, 806, 989, 1013, 1191
HpyF3I CTNAG 7 cut(s) 30, 351, 388, 576, 1059, 1128, 1149
Kpn2I TCCGGA 1 cut(s) 676
KpnI GGTACC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 178, 499, 1064, 1213
LmnI GCTCC 3 cut(s) 109, 169, 357
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 4 cut(s) 348, 510, 793, 820
MaeI CTAG 3 cut(s) 189, 285, 491
MaeIII GTNAC 2 cut(s) 514, 951
MalI GATC 4 cut(s) 180, 501, 1066, 1215
MboI GATC 4 cut(s) 178, 499, 1064, 1213
MboII GAAGA 6 cut(s) 399, 468, 749, 853, 1054, 1267
MhlI GDGCHC 3 cut(s) 174, 634, 1200
MlsI TGGCCA 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 243
Mox20I TGGCCA 1 cut(s) 243
MroI TCCGGA 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 927
MscI TGGCCA 1 cut(s) 243
MseI TTAA 5 cut(s) 21, 72, 162, 446, 1158
MslI CAYNNNNRTG 3 cut(s) 507, 825, 984
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 239, 796
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 3 cut(s) 245, 251, 620
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 3 cut(s) 245, 251, 620
NcoI CCATGG 1 cut(s) 718
NdeII GATC 4 cut(s) 178, 499, 1064, 1213
NlaIV GGNNCC 3 cut(s) 202, 617, 1174
NmuCI GTSAC 1 cut(s) 951
NspI RCATGY 1 cut(s) 1191
PaeI GCATGC 1 cut(s) 1191
PaeR7I CTCGAG 1 cut(s) 1226
PagI TCATGA 1 cut(s) 979
PctI GAATGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 4 cut(s) 89, 809, 878, 1090
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 1 cut(s) 582
PpuMI RGGWCCY 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 593
PshBI ATTAAT 2 cut(s) 21, 72
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 243, 249, 618
PspGI CCWGG 3 cut(s) 243, 249, 618
PspN4I GGNNCC 3 cut(s) 202, 617, 1174
PspPI GGNCC 2 cut(s) 247, 1173
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 4 cut(s) 300, 371, 617, 738
RsaNI GTAC 4 cut(s) 299, 370, 616, 737
RseI CAYNNNNRTG 3 cut(s) 507, 825, 984
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 5 cut(s) 21, 72, 162, 446, 1158
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 4 cut(s) 178, 499, 1064, 1213
Sau96I GGNCC 2 cut(s) 247, 1173
ScaI AGTACT 1 cut(s) 300
ScrFI CCNGG 3 cut(s) 245, 251, 620
SduI GDGCHC 3 cut(s) 174, 634, 1200
SfaNI GCATC 4 cut(s) 348, 510, 793, 820
SfcI CTRYAG 1 cut(s) 640
Sfr274I CTCGAG 1 cut(s) 1226
SinI GGWCC 2 cut(s) 247, 1173
SlaI CTCGAG 1 cut(s) 1226
SmiMI CAYNNNNRTG 3 cut(s) 507, 825, 984
SmlI CTYRAG 3 cut(s) 131, 658, 1226
SmoI CTYRAG 3 cut(s) 131, 658, 1226
SphI GCATGC 1 cut(s) 1191
SsiI CCGC 5 cut(s) 565, 601, 781, 796, 1039
SspI AATATT 2 cut(s) 25, 845
SspMI CTAG 3 cut(s) 189, 285, 491
StyD4I CCNGG 3 cut(s) 243, 249, 618
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 5 cut(s) 374, 558, 612, 707, 1195
TaqI TCGA 6 cut(s) 181, 465, 812, 931, 1227, 1271
TatI WGTACW 2 cut(s) 298, 369
TfiI GAWTC 4 cut(s) 89, 809, 878, 1090
Tru1I TTAA 5 cut(s) 21, 72, 162, 446, 1158
Tru9I TTAA 5 cut(s) 21, 72, 162, 446, 1158
TscAI CASTG 3 cut(s) 379, 710, 1063
TseFI GTSAC 1 cut(s) 951
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 951
TspDTI ATGAA 6 cut(s) 21, 319, 756, 968, 996, 1292
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 379, 710, 1063
Van91I CCANNNNNTGG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 2 cut(s) 247, 1173
VspI ATTAAT 2 cut(s) 21, 72
XapI RAATTY 2 cut(s) 1105, 1139
XbaI TCTAGA 1 cut(s) 188
XceI RCATGY 1 cut(s) 1191
XhoI CTCGAG 1 cut(s) 1226
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 3 cut(s) 189, 285, 491
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.