U3 small nucleolar RNA-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17690 |
| fragaria_vesca | FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 |
| malus_domestica | MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1 |
| prunus_persica | Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1 |
| pyrus_communis | pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650 |
| rosa_chinensis | RchiOBHm_Chr4g0400251 |
| rosa_laevigata | RLG00000009200 |
| rosa_multiflora | Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00345230 |
| rosa_rugosa | Rorug04G0024200 Rorug04G0024300 Rorug04G0024400 |
| rosa_samantha | Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400 |
| rosa_wichuraiana | Rw4G008260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 615 |
| AccB1I | GGYRCC | 1 cut(s) | 615 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 250 |
| AccI | GTMKAC | 1 cut(s) | 465 |
| AccIII | TCCGGA | 1 cut(s) | 676 |
| AciI | CCGC | 5 cut(s) | 565, 601, 781, 796, 1039 |
| AclWI | GGATC | 1 cut(s) | 186 |
| AcoI | YGGCCR | 1 cut(s) | 241 |
| AcsI | RAATTY | 2 cut(s) | 1105, 1139 |
| AcuI | CTGAAG | 2 cut(s) | 393, 1233 |
| AdeI | CACNNNGTG | 1 cut(s) | 959 |
| AfaI | GTAC | 4 cut(s) | 300, 371, 617, 738 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 250, 724 |
| AjnI | CCWGG | 3 cut(s) | 243, 249, 618 |
| AluBI | AGCT | 3 cut(s) | 140, 239, 733 |
| AluI | AGCT | 3 cut(s) | 140, 239, 733 |
| Alw21I | GWGCWC | 3 cut(s) | 174, 634, 1200 |
| Alw44I | GTGCAC | 1 cut(s) | 630 |
| AlwI | GGATC | 1 cut(s) | 186 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 250 |
| Ama87I | CYCGRG | 1 cut(s) | 1226 |
| Aor13HI | TCCGGA | 1 cut(s) | 676 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApaLI | GTGCAC | 1 cut(s) | 630 |
| ApeKI | GCWGC | 1 cut(s) | 580 |
| ApoI | RAATTY | 2 cut(s) | 1105, 1139 |
| AseI | ATTAAT | 2 cut(s) | 21, 72 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 927 |
| Asp718I | GGTACC | 1 cut(s) | 615 |
| AspS9I | GGNCC | 2 cut(s) | 247, 1173 |
| AsuHPI | GGTGA | 1 cut(s) | 739 |
| AvaI | CYCGRG | 1 cut(s) | 1226 |
| AvaII | GGWCC | 2 cut(s) | 247, 1173 |
| AxyI | CCTNAGG | 1 cut(s) | 1149 |
| BaeGI | GKGCMC | 1 cut(s) | 634 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 599, 632 |
| BalI | TGGCCA | 1 cut(s) | 243 |
| BanI | GGYRCC | 1 cut(s) | 615 |
| BauI | CACGAG | 1 cut(s) | 1008 |
| BbsI | GAAGAC | 1 cut(s) | 853 |
| Bbv12I | GWGCWC | 3 cut(s) | 174, 634, 1200 |
| BbvI | GCAGC | 1 cut(s) | 592 |
| BccI | CCATC | 3 cut(s) | 580, 617, 1163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 161, 195 |
| BciT130I | CCWGG | 3 cut(s) | 245, 251, 620 |
| BclI | TGATCA | 1 cut(s) | 499 |
| BfaI | CTAG | 3 cut(s) | 189, 285, 491 |
| BfmI | CTRYAG | 1 cut(s) | 640 |
| BisI | GCNGC | 1 cut(s) | 581 |
| BlsI | GCNGC | 1 cut(s) | 582 |
| BmcAI | AGTACT | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 3 cut(s) | 245, 251, 620 |
| Bme18I | GGWCC | 2 cut(s) | 247, 1173 |
| BmeT110I | CYCGRG | 1 cut(s) | 1226 |
| BmgT120I | GGNCC | 2 cut(s) | 247, 1173 |
| BmiI | GGNNCC | 3 cut(s) | 202, 617, 1174 |
| BmrFI | CCNGG | 3 cut(s) | 245, 251, 620 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 4 cut(s) | 348, 510, 793, 820 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| BoxI | GACNNNNGTC | 1 cut(s) | 593 |
| BpiI | GAAGAC | 1 cut(s) | 853 |
| BpuEI | CTTGAG | 2 cut(s) | 116, 679 |
| Bsa29I | ATCGAT | 1 cut(s) | 181 |
| BsaBI | GATNNNNATC | 1 cut(s) | 905 |
| BsaJI | CCNNGG | 3 cut(s) | 95, 611, 718 |
| BsaWI | WCCGGW | 1 cut(s) | 676 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 250, 724 |
| Bse1I | ACTGG | 1 cut(s) | 533 |
| Bse21I | CCTNAGG | 1 cut(s) | 1149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 905 |
| BseAI | TCCGGA | 1 cut(s) | 676 |
| BseBI | CCWGG | 3 cut(s) | 245, 251, 620 |
| BseCI | ATCGAT | 1 cut(s) | 181 |
| BseDI | CCNNGG | 3 cut(s) | 95, 611, 718 |
| BseGI | GGATG | 4 cut(s) | 328, 466, 628, 632 |
| BseJI | GATNNNNATC | 1 cut(s) | 905 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 250, 724 |
| BseMII | CTCAG | 5 cut(s) | 21, 402, 1050, 1119, 1140 |
| BseNI | ACTGG | 1 cut(s) | 533 |
| BseRI | GAGGAG | 1 cut(s) | 370 |
| BseSI | GKGCMC | 1 cut(s) | 634 |
| BseXI | GCAGC | 1 cut(s) | 592 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BshNI | GGYRCC | 1 cut(s) | 615 |
| BshVI | ATCGAT | 1 cut(s) | 181 |
| BsiHKAI | GWGCWC | 3 cut(s) | 174, 634, 1200 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1226 |
| BsiSI | CCGG | 1 cut(s) | 677 |
| BslFI | GGGAC | 2 cut(s) | 545, 601 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 250, 724 |
| BsmFI | GGGAC | 2 cut(s) | 545, 601 |
| BsmI | GAATGC | 1 cut(s) | 43 |
| BsnI | GGCC | 1 cut(s) | 243 |
| BsoBI | CYCGRG | 1 cut(s) | 1226 |
| Bsp1286I | GDGCHC | 3 cut(s) | 174, 634, 1200 |
| Bsp13I | TCCGGA | 1 cut(s) | 676 |
| Bsp1407I | TGTACA | 1 cut(s) | 369 |
| Bsp143I | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| Bsp19I | CCATGG | 1 cut(s) | 718 |
| BspACI | CCGC | 5 cut(s) | 565, 601, 781, 796, 1039 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspCNI | CTCAG | 5 cut(s) | 22, 401, 1051, 1120, 1141 |
| BspDI | ATCGAT | 1 cut(s) | 181 |
| BspEI | TCCGGA | 1 cut(s) | 676 |
| BspHI | TCATGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 3 cut(s) | 202, 617, 1174 |
| BspPI | GGATC | 1 cut(s) | 186 |
| BspT107I | GGYRCC | 1 cut(s) | 615 |
| BsrGI | TGTACA | 1 cut(s) | 369 |
| BsrI | ACTGG | 1 cut(s) | 533 |
| BssECI | CCNNGG | 3 cut(s) | 95, 611, 718 |
| BssMI | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| BssSI | CACGAG | 1 cut(s) | 1008 |
| BssT1I | CCWWGG | 1 cut(s) | 718 |
| Bst2BI | CACGAG | 1 cut(s) | 1008 |
| Bst2UI | CCWGG | 3 cut(s) | 245, 251, 620 |
| Bst4CI | ACNGT | 5 cut(s) | 374, 558, 612, 707, 1195 |
| Bst6I | CTCTTC | 1 cut(s) | 1250 |
| BstAUI | TGTACA | 1 cut(s) | 369 |
| BstC8I | GCNNGC | 3 cut(s) | 241, 701, 1189 |
| BstDEI | CTNAG | 7 cut(s) | 30, 351, 388, 576, 1059, 1128, 1149 |
| BstDSI | CCRYGG | 3 cut(s) | 95, 611, 718 |
| BstF5I | GGATG | 4 cut(s) | 328, 466, 628, 632 |
| BstKTI | GATC | 4 cut(s) | 181, 502, 1067, 1216 |
| BstMBI | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| BstNI | CCWGG | 3 cut(s) | 245, 251, 620 |
| BstNSI | RCATGY | 1 cut(s) | 1191 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 593 |
| BstSCI | CCNGG | 3 cut(s) | 243, 249, 618 |
| BstSFI | CTRYAG | 1 cut(s) | 640 |
| BstSLI | GKGCMC | 1 cut(s) | 634 |
| BstV1I | GCAGC | 1 cut(s) | 592 |
| BstV2I | GAAGAC | 1 cut(s) | 853 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1183 |
| Bsu15I | ATCGAT | 1 cut(s) | 181 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1149 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BsuTUI | ATCGAT | 1 cut(s) | 181 |
| BtgI | CCRYGG | 3 cut(s) | 95, 611, 718 |
| BtsCI | GGATG | 4 cut(s) | 328, 466, 628, 632 |
| BtsIMutI | CAGTG | 3 cut(s) | 379, 703, 1056 |
| Cac8I | GCNNGC | 3 cut(s) | 241, 701, 1189 |
| CaiI | CAGNNNCTG | 1 cut(s) | 250 |
| CciI | TCATGA | 1 cut(s) | 979 |
| Cfr13I | GGNCC | 2 cut(s) | 247, 1173 |
| ClaI | ATCGAT | 1 cut(s) | 181 |
| CseI | GACGC | 1 cut(s) | 951 |
| Csp6I | GTAC | 4 cut(s) | 299, 370, 616, 737 |
| CviJI | RGCY | 7 cut(s) | 140, 239, 243, 283, 440, 733, 1225 |
| CviKI_1 | RGCY | 7 cut(s) | 140, 239, 243, 283, 440, 733, 1225 |
| CviQI | GTAC | 4 cut(s) | 299, 370, 616, 737 |
| DdeI | CTNAG | 7 cut(s) | 30, 351, 388, 576, 1059, 1128, 1149 |
| DpnI | GATC | 4 cut(s) | 180, 501, 1066, 1215 |
| DpnII | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| DraIII | CACNNNGTG | 1 cut(s) | 959 |
| EaeI | YGGCCR | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 1250 |
| EarI | CTCTTC | 1 cut(s) | 1250 |
| EciI | GGCGGA | 1 cut(s) | 770 |
| Eco130I | CCWWGG | 1 cut(s) | 718 |
| Eco47I | GGWCC | 2 cut(s) | 247, 1173 |
| Eco57I | CTGAAG | 2 cut(s) | 393, 1233 |
| Eco81I | CCTNAGG | 1 cut(s) | 1149 |
| Eco88I | CYCGRG | 1 cut(s) | 1226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 247 |
| EcoRII | CCWGG | 3 cut(s) | 243, 249, 618 |
| EcoT14I | CCWWGG | 1 cut(s) | 718 |
| ErhI | CCWWGG | 1 cut(s) | 718 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 311, 343, 741, 773, 756, 788 |
| FaqI | GGGAC | 2 cut(s) | 545, 601 |
| FbaI | TGATCA | 1 cut(s) | 499 |
| FblI | GTMKAC | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 581 |
| FokI | GGATG | 4 cut(s) | 335, 473, 635, 639 |
| Fsp4HI | GCNGC | 1 cut(s) | 581 |
| FspBI | CTAG | 3 cut(s) | 189, 285, 491 |
| GluI | GCNGC | 1 cut(s) | 581 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| HapII | CCGG | 1 cut(s) | 677 |
| HgaI | GACGC | 1 cut(s) | 951 |
| HincII | GTYRAC | 2 cut(s) | 466, 1266 |
| HindII | GTYRAC | 2 cut(s) | 466, 1266 |
| HinfI | GANTC | 4 cut(s) | 89, 809, 878, 1090 |
| HpaII | CCGG | 1 cut(s) | 677 |
| HphI | GGTGA | 1 cut(s) | 739 |
| Hpy166II | GTNNAC | 5 cut(s) | 348, 466, 632, 974, 1266 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 391, 939, 1104 |
| Hpy188III | TCNNGA | 6 cut(s) | 189, 658, 677, 980, 1228, 1296 |
| Hpy8I | GTNNAC | 5 cut(s) | 348, 466, 632, 974, 1266 |
| HpyAV | CCTTC | 4 cut(s) | 718, 976, 1025, 1229 |
| HpyCH4III | ACNGT | 5 cut(s) | 374, 558, 612, 707, 1195 |
| HpyCH4V | TGCA | 8 cut(s) | 43, 506, 523, 632, 806, 989, 1013, 1191 |
| HpyF3I | CTNAG | 7 cut(s) | 30, 351, 388, 576, 1059, 1128, 1149 |
| Kpn2I | TCCGGA | 1 cut(s) | 676 |
| KpnI | GGTACC | 1 cut(s) | 619 |
| Ksp22I | TGATCA | 1 cut(s) | 499 |
| Kzo9I | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| LmnI | GCTCC | 3 cut(s) | 109, 169, 357 |
| Lsp1109I | GCAGC | 1 cut(s) | 592 |
| LweI | GCATC | 4 cut(s) | 348, 510, 793, 820 |
| MaeI | CTAG | 3 cut(s) | 189, 285, 491 |
| MaeIII | GTNAC | 2 cut(s) | 514, 951 |
| MalI | GATC | 4 cut(s) | 180, 501, 1066, 1215 |
| MboI | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| MboII | GAAGA | 6 cut(s) | 399, 468, 749, 853, 1054, 1267 |
| MhlI | GDGCHC | 3 cut(s) | 174, 634, 1200 |
| MlsI | TGGCCA | 1 cut(s) | 243 |
| MluNI | TGGCCA | 1 cut(s) | 243 |
| Mox20I | TGGCCA | 1 cut(s) | 243 |
| MroI | TCCGGA | 1 cut(s) | 676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 927 |
| MscI | TGGCCA | 1 cut(s) | 243 |
| MseI | TTAA | 5 cut(s) | 21, 72, 162, 446, 1158 |
| MslI | CAYNNNNRTG | 3 cut(s) | 507, 825, 984 |
| Msp20I | TGGCCA | 1 cut(s) | 243 |
| MspA1I | CMGCKG | 2 cut(s) | 239, 796 |
| MspI | CCGG | 1 cut(s) | 677 |
| MspR9I | CCNGG | 3 cut(s) | 245, 251, 620 |
| Mva1269I | GAATGC | 1 cut(s) | 43 |
| MvaI | CCWGG | 3 cut(s) | 245, 251, 620 |
| NcoI | CCATGG | 1 cut(s) | 718 |
| NdeII | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| NlaIV | GGNNCC | 3 cut(s) | 202, 617, 1174 |
| NmuCI | GTSAC | 1 cut(s) | 951 |
| NspI | RCATGY | 1 cut(s) | 1191 |
| PaeI | GCATGC | 1 cut(s) | 1191 |
| PaeR7I | CTCGAG | 1 cut(s) | 1226 |
| PagI | TCATGA | 1 cut(s) | 979 |
| PctI | GAATGC | 1 cut(s) | 43 |
| PdmI | GAANNNNTTC | 1 cut(s) | 927 |
| PfeI | GAWTC | 4 cut(s) | 89, 809, 878, 1090 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 250 |
| PkrI | GCNGC | 1 cut(s) | 582 |
| PpuMI | RGGWCCY | 1 cut(s) | 247 |
| PshAI | GACNNNNGTC | 1 cut(s) | 593 |
| PshBI | ATTAAT | 2 cut(s) | 21, 72 |
| Psp5II | RGGWCCY | 1 cut(s) | 247 |
| Psp6I | CCWGG | 3 cut(s) | 243, 249, 618 |
| PspGI | CCWGG | 3 cut(s) | 243, 249, 618 |
| PspN4I | GGNNCC | 3 cut(s) | 202, 617, 1174 |
| PspPI | GGNCC | 2 cut(s) | 247, 1173 |
| PspPPI | RGGWCCY | 1 cut(s) | 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 250 |
| PvuII | CAGCTG | 1 cut(s) | 239 |
| RsaI | GTAC | 4 cut(s) | 300, 371, 617, 738 |
| RsaNI | GTAC | 4 cut(s) | 299, 370, 616, 737 |
| RseI | CAYNNNNRTG | 3 cut(s) | 507, 825, 984 |
| SalI | GTCGAC | 1 cut(s) | 464 |
| SaqAI | TTAA | 5 cut(s) | 21, 72, 162, 446, 1158 |
| SatI | GCNGC | 1 cut(s) | 581 |
| Sau3AI | GATC | 4 cut(s) | 178, 499, 1064, 1213 |
| Sau96I | GGNCC | 2 cut(s) | 247, 1173 |
| ScaI | AGTACT | 1 cut(s) | 300 |
| ScrFI | CCNGG | 3 cut(s) | 245, 251, 620 |
| SduI | GDGCHC | 3 cut(s) | 174, 634, 1200 |
| SfaNI | GCATC | 4 cut(s) | 348, 510, 793, 820 |
| SfcI | CTRYAG | 1 cut(s) | 640 |
| Sfr274I | CTCGAG | 1 cut(s) | 1226 |
| SinI | GGWCC | 2 cut(s) | 247, 1173 |
| SlaI | CTCGAG | 1 cut(s) | 1226 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 507, 825, 984 |
| SmlI | CTYRAG | 3 cut(s) | 131, 658, 1226 |
| SmoI | CTYRAG | 3 cut(s) | 131, 658, 1226 |
| SphI | GCATGC | 1 cut(s) | 1191 |
| SsiI | CCGC | 5 cut(s) | 565, 601, 781, 796, 1039 |
| SspI | AATATT | 2 cut(s) | 25, 845 |
| SspMI | CTAG | 3 cut(s) | 189, 285, 491 |
| StyD4I | CCNGG | 3 cut(s) | 243, 249, 618 |
| StyI | CCWWGG | 1 cut(s) | 718 |
| TaaI | ACNGT | 5 cut(s) | 374, 558, 612, 707, 1195 |
| TaqI | TCGA | 6 cut(s) | 181, 465, 812, 931, 1227, 1271 |
| TatI | WGTACW | 2 cut(s) | 298, 369 |
| TfiI | GAWTC | 4 cut(s) | 89, 809, 878, 1090 |
| Tru1I | TTAA | 5 cut(s) | 21, 72, 162, 446, 1158 |
| Tru9I | TTAA | 5 cut(s) | 21, 72, 162, 446, 1158 |
| TscAI | CASTG | 3 cut(s) | 379, 710, 1063 |
| TseFI | GTSAC | 1 cut(s) | 951 |
| TseI | GCWGC | 1 cut(s) | 580 |
| Tsp45I | GTSAC | 1 cut(s) | 951 |
| TspDTI | ATGAA | 6 cut(s) | 21, 319, 756, 968, 996, 1292 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 3 cut(s) | 379, 710, 1063 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 250 |
| VneI | GTGCAC | 1 cut(s) | 630 |
| VpaK11BI | GGWCC | 2 cut(s) | 247, 1173 |
| VspI | ATTAAT | 2 cut(s) | 21, 72 |
| XapI | RAATTY | 2 cut(s) | 1105, 1139 |
| XbaI | TCTAGA | 1 cut(s) | 188 |
| XceI | RCATGY | 1 cut(s) | 1191 |
| XhoI | CTCGAG | 1 cut(s) | 1226 |
| XmiI | GTMKAC | 1 cut(s) | 465 |
| XmnI | GAANNNNTTC | 1 cut(s) | 927 |
| XspI | CTAG | 3 cut(s) | 189, 285, 491 |
| ZrmI | AGTACT | 1 cut(s) | 300 |