Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

3433163 .. 3433608

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCCATACTCGGTGCTATAAGCTGGCTTACTTTGGCGTATTGGGGATGGCCAATCAGTCAACATTTGGGAAGATGATTGGATACAGAATAGTCTCGGATCTGCTCAACACAGACTCTTTGTCTTGGGATATTGCAGTGGTTCATGCCTGCTTTGAACCCCATGTAGCCTCGCAAGTTCTATCGATTCCGCTTAGCAGCCGGTTTGGAAGAGATAGGCTTTCGTGGAAGCTTGACAAGAAGGGCTTTTTCTCTATTAAATCAGCTTATCAAGTTGCCTGTGACTTCTCATTGGGTAATCTATTTGCTTCTGCTTCTACTGGTGATCCGTATGGACCGTTATGGAAGGCGTTGTGGAAGGCCAAAGTGCCAAGTAAAGTAGCTATCTTTGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

9.51

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	2 cut(s)	108, 320
AcoI	YGGCCR	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	158
AhdI	GACNNNNNGTC	1 cut(s)	121
AluBI	AGCT	4 cut(s)	25, 232, 266, 383
AluI	AGCT	4 cut(s)	25, 232, 266, 383
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	108, 320
AoxI	GGCC	3 cut(s)	3, 51, 360
ApeKI	GCWGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	4, 335
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	335
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	4, 335
Bpu1102I	GCTNAGC	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	185
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	3 cut(s)	5, 53, 362
BshVI	ATCGAT	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	5, 53, 362
Bsp143I	GATC	2 cut(s)	100, 325
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	3 cut(s)	5, 53, 362
BspDI	ATCGAT	1 cut(s)	185
BspPI	GGATC	2 cut(s)	108, 320
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	201
BssMI	GATC	2 cut(s)	100, 325
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	27, 151
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	103, 328
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	100, 325
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	5, 53, 362
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	27, 151
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	4, 335
ClaI	ATCGAT	1 cut(s)	185
CviAII	CATG	2 cut(s)	146, 164
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	102, 327
DpnII	GATC	2 cut(s)	100, 325
DriI	GACNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	335
FaeI	CATG	2 cut(s)	149, 167
FaiI	YATR	6 cut(s)	9, 21, 147, 165, 333, 343
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	2 cut(s)	145, 163
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	5, 53, 362
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	2 cut(s)	149, 167
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	116, 187
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	3 cut(s)	235, 340, 352
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	149, 167
Kzo9I	GATC	2 cut(s)	100, 325
LpnPI	CCDG	5 cut(s)	11, 163, 215, 292, 306
Lsp1109I	GCAGC	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	102, 327
MboI	GATC	2 cut(s)	100, 325
MboII	GAAGA	2 cut(s)	85, 222
MflI	RGATCY	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	100, 325
NlaIII	CATG	2 cut(s)	149, 167
NmuCI	GTSAC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	4, 335
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	100, 325
Sau96I	GGNCC	2 cut(s)	4, 335
SchI	GAGTC	1 cut(s)	110
SetI	ASST	4 cut(s)	27, 234, 268, 385
SinI	GGWCC	1 cut(s)	335
SsiI	CCGC	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.