Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

3435360 .. 3435548

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTGAACCCAAATTTCAGATTCTTAAAAGGAGCATGGCCAATCAACTCACCGATGATCAGATCTAAGTTCAAGGAAGCCTTCAGCCTCTTCAACAAGGACGGCGATGGTTGTATCACTACCAAGGAGCTCGGGACTGTCATGAGGTCACTGGGGCCAGAACCCAACCCAGGACATGATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

62

Amino Acids

6.97

Weight (kDa)

9.03

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	23 - 52	1.9e-08	EF-hand domain
EF-hand_1	PF00036	23 - 51	1.4e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	7, 73, 94
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	38, 155
ApoI	RAATTY	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	2 cut(s)	57, 178
BglII	AGATCT	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	123, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	123, 169
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	40, 157
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	40, 157
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	57, 62, 178
BspANI	GGCC	2 cut(s)	40, 157
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	123, 169
BssMI	GATC	3 cut(s)	57, 62, 178
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	60, 65, 181
BstMBI	GATC	3 cut(s)	57, 62, 178
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	40, 157
BtgZI	GCGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	3 cut(s)	36, 142, 176
CviJI	RGCY	5 cut(s)	40, 80, 87, 130, 157
CviKI_1	RGCY	5 cut(s)	40, 80, 87, 130, 157
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	3 cut(s)	59, 64, 180
DpnII	GATC	3 cut(s)	57, 62, 178
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	39, 145, 179
FaiI	YATR	3 cut(s)	37, 143, 177
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	3 cut(s)	35, 141, 175
FbaI	TGATCA	2 cut(s)	57, 178
FriOI	GRGCYC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	40, 157
Hin1II	CATG	3 cut(s)	39, 145, 179
HinfI	GANTC	1 cut(s)	21
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	20, 62
Hpy188III	TCNNGA	2 cut(s)	133, 142
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	39, 145, 179
Ksp22I	TGATCA	2 cut(s)	57, 178
Kzo9I	GATC	3 cut(s)	57, 62, 178
LmnI	GCTCC	2 cut(s)	32, 127
LpnPI	CCDG	4 cut(s)	137, 156, 171, 183
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	3 cut(s)	59, 64, 180
MboI	GATC	3 cut(s)	57, 62, 178
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	40
MnlI	CCTC	2 cut(s)	98, 138
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	57, 62, 178
NlaIII	CATG	3 cut(s)	39, 145, 179
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	3 cut(s)	57, 62, 178
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	132, 149
Sse9I	AATT	1 cut(s)	13
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.