Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7994400.1

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 453

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7994400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

atgctctacacagagagagcacatttttaccacagatataagatccgcggaattcagaatttaatcgtctattcattgccggagagaaaggaattttaccctgaggttgttaatatggttgatggatcccacgacatggcatgcacggtgctcttttctccttttgatctcctccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

59

Amino Acids

7.11

Weight (kDa)

6.81

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	46, 48
AclWI	GGATC	3 cut(s)	37, 120, 133
AcsI	RAATTY	3 cut(s)	51, 58, 92
AfiI	CCNNNNNNNGG	1 cut(s)	136
Alw21I	GWGCWC	2 cut(s)	22, 153
AlwI	GGATC	3 cut(s)	37, 120, 133
ApoI	RAATTY	3 cut(s)	51, 58, 92
AxyI	CCTNAGG	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	125
Bbv12I	GWGCWC	2 cut(s)	22, 153
BccI	CCATC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	22, 153
BsiSI	CCGG	2 cut(s)	80, 175
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	22, 153
Bsp143I	GATC	3 cut(s)	42, 125, 166
BspACI	CCGC	2 cut(s)	46, 48
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	3 cut(s)	37, 120, 133
BsrDI	GCAATG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	42, 125, 166
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	45, 128, 169
BstMBI	GATC	3 cut(s)	42, 125, 166
BstNSI	RCATGY	1 cut(s)	144
BstUI	CGCG	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	42, 125
BstYI	RGATCY	2 cut(s)	42, 125
Bsu36I	CCTNAGG	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	142
Cfr42I	CCGCGG	1 cut(s)	49
CviAII	CATG	2 cut(s)	136, 141
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	44, 127, 168
DpnII	GATC	3 cut(s)	42, 125, 166
Eco81I	CCTNAGG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	139, 144
FaiI	YATR	4 cut(s)	39, 116, 137, 142
FatI	CATG	2 cut(s)	135, 140
HapII	CCGG	2 cut(s)	80, 175
Hin1II	CATG	2 cut(s)	139, 144
HpaII	CCGG	2 cut(s)	80, 175
Hpy188I	TCNGA	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	139, 144
KspI	CCGCGG	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	42, 125, 166
LpnPI	CCDG	2 cut(s)	93, 114
MalI	GATC	3 cut(s)	44, 127, 168
MboI	GATC	3 cut(s)	42, 125, 166
MflI	RGATCY	2 cut(s)	42, 125
MhlI	GDGCHC	2 cut(s)	22, 153
MluCI	AATT	3 cut(s)	51, 58, 92
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	62, 111
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	2 cut(s)	80, 175
MvnI	CGCG	1 cut(s)	48
NdeII	GATC	3 cut(s)	42, 125, 166
NlaIII	CATG	2 cut(s)	139, 144
NlaIV	GGNNCC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	42, 125
SacII	CCGCGG	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	62, 111
Sau3AI	GATC	3 cut(s)	42, 125, 166
SduI	GDGCHC	2 cut(s)	22, 153
SetI	ASST	1 cut(s)	108
Sfr303I	CCGCGG	1 cut(s)	49
SgeI	CNNG	7 cut(s)	59, 92, 113, 143, 148, 153, 157
SgrBI	CCGCGG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	3 cut(s)	51, 58, 92
SsiI	CCGC	2 cut(s)	46, 48
TaaI	ACNGT	1 cut(s)	148
TasI	AATT	3 cut(s)	51, 58, 92
Tru1I	TTAA	2 cut(s)	62, 111
Tru9I	TTAA	2 cut(s)	62, 111
TspDTI	ATGAA	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	3 cut(s)	51, 58, 92
XceI	RCATGY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.