Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

20310717 .. 20312942

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGAAAACAATCAGGCAAGAACCCAGGATTTGGAAAACGCAAAATACCCAACAAGTTCAACACGAGCAAGAACAGTCGTCGTCTTGAAGAAGAAAATGTTGCACACAGCCCCACGACTACTTCCTCAGGGGAACTACCAAACGAAGAATCTAACAGTGTGGTTTCCGAAGAAGAAATGGTTTATAAGGAGCCATCCATGTATGATAAATTGTTAATGACGCTGGGATCATCTAGGAAATCTGTTTCTGCTGCATATAAGATGAGAAAAAGACAAGAAGAAGGTATAAGTGACTCAGAAAATTCTGAAGATGATGGAACTGAATCTTCTAGTGACTCAGAGGATGCAGAAGATGATGAAGAAGGAGTTGATGATGAATTTCCTATGGAAGGAAAACACGAAGGCCCTGAAAAGGCAGGACTTGAGGAGCACAGTGAAGATTCTGAAAATGAGGATGACCAGGAGACCTCTGTCTTGGATGACCAGGAGACCTCTGACTCAGATGACCAAGAGAATCATGATTCAGATGCAAAACAGGACCTGCGAACCTGTTCTCAATCTGCTGTTGAACCATCAATGTGCTTGAGATGCATTTACATGAAATATCTTGTTCATTTGGCTTTTGCATTTTTATTAGTTCCTTTGATATACACTTGGGGCACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

223

Amino Acids

24.82

Weight (kDa)

4.35

Isoelectric Point (pI)

70.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	32
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	301, 377
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	32, 389, 412
AgsI	TTSAA	3 cut(s)	61, 89, 569
AjnI	CCWGG	3 cut(s)	25, 459, 483
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	458, 482
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	541
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	301, 377
Asp700I	GAANNNNTTC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	404, 538
AvaII	GGWCC	1 cut(s)	538
AxyI	CCTNAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	202, 308, 580
BciT130I	CCWGG	3 cut(s)	27, 461, 485
BcoDI	GTCTC	2 cut(s)	458, 482
BfaI	CTAG	2 cut(s)	234, 330
BfuAI	ACCTGC	1 cut(s)	549
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	27, 461, 485
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	404, 538
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	3 cut(s)	27, 461, 485
BmsI	GCATC	3 cut(s)	334, 517, 578
BoxI	GACNNNNGTC	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	443, 604
BsaI	GGTCTC	2 cut(s)	458, 482
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 389, 412
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	27, 461, 485
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	4 cut(s)	194, 349, 460, 484
BseLI	CCNNNNNNNGG	3 cut(s)	32, 389, 412
BseMII	CTCAG	4 cut(s)	141, 309, 351, 513
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	32, 389, 412
BsmAI	GTCTC	2 cut(s)	458, 482
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	2 cut(s)	458, 482
Bsp1286I	GDGCHC	2 cut(s)	432, 662
Bsp143I	GATC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	4 cut(s)	140, 308, 350, 512
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	235
BspTNI	GGTCTC	2 cut(s)	458, 482
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	3 cut(s)	27, 461, 485
Bst4CI	ACNGT	3 cut(s)	77, 158, 434
BstDEI	CTNAG	4 cut(s)	127, 295, 337, 499
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	4 cut(s)	194, 349, 460, 484
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	2 cut(s)	458, 482
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	3 cut(s)	27, 461, 485
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	25, 459, 483
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	194, 349, 460, 484
BtsIMutI	CAGTG	2 cut(s)	163, 439
BveI	ACCTGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	541
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	404, 538
CseI	GACGC	1 cut(s)	229
CviAII	CATG	3 cut(s)	199, 518, 598
CviJI	RGCY	4 cut(s)	111, 193, 405, 620
CviKI_1	RGCY	4 cut(s)	111, 193, 405, 620
DdeI	CTNAG	4 cut(s)	127, 295, 337, 499
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eco31I	GGTCTC	2 cut(s)	458, 482
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	2 cut(s)	404, 538
EcoRII	CCWGG	3 cut(s)	25, 459, 483
EcoT22I	ATGCAT	1 cut(s)	593
FaeI	CATG	3 cut(s)	202, 521, 601
FatI	CATG	3 cut(s)	198, 517, 597
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	4 cut(s)	181, 356, 467, 491
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	234, 330
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	202, 521, 601
HinfI	GANTC	8 cut(s)	149, 293, 323, 335, 440, 497, 514, 521
Hpy188I	TCNGA	8 cut(s)	169, 298, 307, 340, 445, 496, 502, 526
Hpy188III	TCNNGA	2 cut(s)	86, 518
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	4 cut(s)	275, 356, 383, 395
HpyCH4III	ACNGT	3 cut(s)	77, 158, 434
HpyCH4V	TGCA	6 cut(s)	104, 254, 347, 530, 591, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	4 cut(s)	127, 295, 337, 499
Hsp92II	CATG	3 cut(s)	202, 521, 601
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	190, 427
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	3 cut(s)	334, 517, 578
MaeI	CTAG	2 cut(s)	234, 330
MaeIII	GTNAC	2 cut(s)	290, 332
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	432, 662
MluCI	AATT	3 cut(s)	209, 301, 377
MlyI	GAGTC	3 cut(s)	287, 329, 491
MnlI	CCTC	6 cut(s)	136, 334, 418, 445, 478, 502
Mph1103I	ATGCAT	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	2 cut(s)	215, 667
MslI	CAYNNNNRTG	2 cut(s)	577, 596
MspR9I	CCNGG	3 cut(s)	27, 461, 485
MvaI	CCWGG	3 cut(s)	27, 461, 485
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	202, 521, 601
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	290, 332
NsiI	ATGCAT	1 cut(s)	593
PagI	TCATGA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	5 cut(s)	149, 323, 440, 514, 521
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	3 cut(s)	287, 329, 491
PpsI	GAGTC	3 cut(s)	287, 329, 491
PpuMI	RGGWCCY	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	25, 459, 483
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	25, 459, 483
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	404, 538
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	577, 596
SaqAI	TTAA	2 cut(s)	215, 667
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	404, 538
SchI	GAGTC	3 cut(s)	287, 329, 491
ScrFI	CCNGG	3 cut(s)	27, 461, 485
SduI	GDGCHC	2 cut(s)	432, 662
SetI	ASST	5 cut(s)	286, 470, 494, 543, 551
SfaNI	GCATC	3 cut(s)	334, 517, 578
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	2 cut(s)	577, 596
SmlI	CTYRAG	2 cut(s)	422, 583
SmoI	CTYRAG	2 cut(s)	422, 583
Sse9I	AATT	3 cut(s)	209, 301, 377
SspMI	CTAG	2 cut(s)	234, 330
StyD4I	CCNGG	3 cut(s)	25, 459, 483
TaaI	ACNGT	3 cut(s)	77, 158, 434
TasI	AATT	3 cut(s)	209, 301, 377
TfiI	GAWTC	5 cut(s)	149, 323, 440, 514, 521
Tru1I	TTAA	2 cut(s)	215, 667
Tru9I	TTAA	2 cut(s)	215, 667
TscAI	CASTG	2 cut(s)	163, 439
TseFI	GTSAC	2 cut(s)	290, 332
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	290, 332
TspDTI	ATGAA	4 cut(s)	372, 390, 602, 614
TspRI	CASTG	2 cut(s)	163, 439
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	538
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	2 cut(s)	301, 377
XmnI	GAANNNNTTC	1 cut(s)	550
XspI	CTAG	2 cut(s)	234, 330
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.