Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

3434844 .. 3435239

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0024300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTTTTATATCCACCGCTGAGCTGCGTCATGTGGGAGAAGCTCGCTGATGAGGAAGTGGATGATGAGATGATTCGCAAGGTTGATGTTGATGCCTACTATGAAAGCATGGAAGCATGGAAACATGAAAAGTCAACTTTAGCACATTTTCCTACTTCGGCTAGGAGAAACCGAGCTAAACAAGGAAGGAGGGGCAGCAGACTGACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

70

Amino Acids

8.26

Weight (kDa)

7.89

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AluBI	AGCT	3 cut(s)	24, 43, 176
AluI	AGCT	3 cut(s)	24, 43, 176
ApeKI	GCWGC	2 cut(s)	24, 195
BbvI	GCAGC	2 cut(s)	11, 207
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	25, 196
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	2 cut(s)	26, 197
BmsI	GCATC	1 cut(s)	82
Bpu1102I	GCTNAGC	1 cut(s)	20
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	11, 207
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	11, 207
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	45
CseI	GACGC	1 cut(s)	16
CviAII	CATG	4 cut(s)	31, 109, 117, 125
CviJI	RGCY	4 cut(s)	24, 43, 161, 176
CviKI_1	RGCY	4 cut(s)	24, 43, 161, 176
DdeI	CTNAG	1 cut(s)	20
FaeI	CATG	4 cut(s)	34, 112, 120, 128
FaiI	YATR	6 cut(s)	10, 32, 102, 110, 118, 126
FatI	CATG	4 cut(s)	30, 108, 116, 124
Fnu4HI	GCNGC	2 cut(s)	25, 196
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	25, 196
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	25, 196
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	34, 112, 120, 128
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	34, 112, 120, 128
Lsp1109I	GCAGC	2 cut(s)	11, 207
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	162
MnlI	CCTC	2 cut(s)	46, 183
MspA1I	CMGCKG	1 cut(s)	19
NlaIII	CATG	4 cut(s)	34, 112, 120, 128
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	26, 197
SatI	GCNGC	2 cut(s)	25, 196
SetI	ASST	4 cut(s)	26, 45, 84, 178
SfaNI	GCATC	1 cut(s)	82
SgeI	CNNG	9 cut(s)	43, 56, 91, 121, 129, 137, 174, 185, 194
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	24, 195
TspDTI	ATGAA	2 cut(s)	117, 141
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.