Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

17919570 .. 17933803

Gene Structure 14234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGGGAAGCAATCAGGCCAGAACCCAGGATGGAGAAAACGCAAAATGCCCAACCAGTTCCAGAAAGGTGAGAAAAATCGCCGGGTTGAAGAAGAAAAGGTTGCGGTGGCTAGCCCCTCATCTACTTCATCAGGGGAACTGCCAGAGGAAGAATCCAATGGTGTGGCTTCCGAAGAAGAAATAGTTTATAAAGAGCCATCAATGTATGACAAATTGTTGATGGCGCTAGGGTCATCTAGTAAAGCTGTTGCGGCTGCCTATAAGCAGAGAAAAAGACAAGAAGAAGGTAAAAGTGACTCTGACTCAGAAGAGGAGGAGGAGGAGGAGGATGACGATGACGACAGAACTGAATCTTCTAGTGACTTGGAAGAAGTAGATGATGGTCAAGAAGGAGGTGACGATAAATTTCCAATGAAAGGAAAATTGAAAGATCCTGCAAGTGAAGATGCAAAAACTGAGGATGATCAGGACACCTCTGACATGGATGACCGCGAGACCTCTGACTCGGATGACCAGGGGATGTCCGACTCAGATGCAGAACAGGACCTGGGAATCCATTCTCAATCTGCTATTGATGCATCAATATGCTTGAGTTCCTTTGGTGTACAGTTGGAGCACAAGTTAACAGAAGCAGAGGTTGAAAATCTGGCAAAAAAGAAATGGAGATATAAATGGGATGTGCCTGCTGCTGGAATGTCAAAGGGCAAATGGGCAGGAACGGGAGAGTGTTGCATAAAAGATGTTAATCCCGATTCTAGTTATGATCTGAAGCAAAAGTTGTATAAGCACTGGTTGGATGTATATAACACATCTGGACGCAAGGATTTTCATTCATCCAGACAAAGATTGTTCTTCTCCCTCTTCAATAGTTATCGGGATATACTGCATTGCAACAAGAAACCCTTTTATCATAGAGGATCAGAAGAAGACTCAAGTGTCATGGATGCATATATTATGCATTGTCTGAACCATGTCTTCAGAACTAGAGATCTTGTAATGAAGAATGATGCAAAAGTGGCCAAGCATCAGGAAAATGCTAAGAATGTAATTCTTACTGATGATAGTCTCCGTGATCATGGCTTTACTCGTCCTAAGGTGTTGATCCTACTGCCAATGGCGAGCATTGCACTTCGTGTTGTTAAGAGGATAATACAACTTACCCCTTCAGCTCACAAGGTTAATGTGGACCACATGGACCGATTTTCTAAAGAGTTCGGAAGTGAAGAGGTTCTTGACAATGAGGACGAAAGAGATATACCACCAGGTGACCAGAACTCTGGAAATGTAAAACCTCACAAGTCATCGAAACCTAGTGACTTCCAAGTACTTTTTGGTGGCAATAGCAAGGATGATTTCATGGTTGGCATCAAGTTCACGAAGAGGAGCATAAAGTTGTACAGTGATTTTTATTCCTCAGATATGATAGTTGCTTCTGCTGTTGGTTTGTTGAAAAAAATTGATGAGGCTAAAATAAATAAGGAAAAGGATGTCGACTATCTTTCTTCTATAGAGGTTCTGATCATTGATCATGCAGATGTTATAACAATGCAGAACTGGGACTTTTTGAAGTCAGTTGTTGAGCAGTTAAACCATCAACCATCTAAGCAGCATGGAACTGATATCATGCGTATAAGGCCATGGTACCTGGATGGACATGCATCTTTTTATAGGCAAACTATACTCTTGAGTTATTATTCAAACCCAGATATAAACAATTTGTTTAACAAGCACTGCACAAATTACCGTGGGAAGGTAAAGTTGGTGCATGAATATAAAGGAGTTCTTCCTAAAGTGGTACTTCAAGTACGCCAGATTTTTCAGCGGTTTGAGGGAGATGAAATAGTGAATATTGATGATGCTCGTTTTGAACATTTTGCTACTAAGGTCTTCCCCAAGATAAAAAACTCTGTTGAGGGCGGGATTATGATATTTATCAGCTCTTACTTTGAATATGTTCAAGTTCGTAATTTTTTGAAGTCACAGAATGCGTCCTTCTGTCTGCTTCATGAATATGCAGAGCAAAAAGATATTTCCCGTGCACGGGTTTGGTTCTTTGAAGGAAAGCGGAAGATCATGCTCTACACAGAGAGAGCACATTTTTACCACAGATATAAGATCCGCGGAATTCAGAATTTAATCGTCTATTCATTGCCGGAGAGAAAGGAATTTTACCCTGAGGTTGTTAATATGGTTGATGGATCCCACGACATGGCATGCACGGTGCTCTTTTCTCCTTTTGATCTCCTCCGGCTTGAGAGAATTGTGGGAACTGCTCCAGCAAAGAGAATGGTGTCATCGAAAATGAATTTATTTTCTTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

774

Amino Acids

88.85

Weight (kDa)

5.76

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP25_NTPase-like	PF22916	291 - 585	7.3e-107	UTP25, NTP hydrolase-like domain
Utp25_C	PF06862	596 - 773	3.1e-62	Utp25, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	189, 1541
AasI	GACNNNNNNGTC	1 cut(s)	935
Acc65I	GGTACC	1 cut(s)	1641
AccB1I	GGYRCC	1 cut(s)	1641
AccB7I	CCANNNNNTGG	1 cut(s)	2209
AccI	GTMKAC	1 cut(s)	1491
AccII	CGCG	2 cut(s)	492, 2121
AciI	CCGC	8 cut(s)	104, 251, 490, 1822, 1917, 2065, 2119, 2121
AclWI	GGATC	6 cut(s)	425, 925, 1096, 2110, 2193, 2206
AcoI	YGGCCR	1 cut(s)	1017
AcsI	RAATTY	5 cut(s)	404, 2124, 2131, 2165, 2305
AcuI	CTGAAG	3 cut(s)	788, 961, 1149
AdeI	CACNNNGTG	2 cut(s)	1133, 1265
AfaI	GTAC	6 cut(s)	606, 1326, 1397, 1643, 1797, 1806
AfiI	CCNNNNNNNGG	6 cut(s)	416, 689, 1750, 2040, 2041, 2209
AjnI	CCWGG	5 cut(s)	25, 513, 546, 1261, 1644
AjuI	GAANNNNNNNTTGG	2 cut(s)	1742, 1774
AluBI	AGCT	3 cut(s)	245, 1169, 1938
AluI	AGCT	3 cut(s)	245, 1169, 1938
Alw21I	GWGCWC	4 cut(s)	618, 2041, 2095, 2226
Alw26I	GTCTC	2 cut(s)	488, 1070
Alw44I	GTGCAC	1 cut(s)	2037
AlwI	GGATC	6 cut(s)	425, 925, 1096, 2110, 2193, 2206
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	3 cut(s)	16, 1017, 1634
ApaLI	GTGCAC	1 cut(s)	2037
ApeKI	GCWGC	3 cut(s)	254, 686, 1606
ApoI	RAATTY	5 cut(s)	404, 2124, 2131, 2165, 2305
Asp700I	GAANNNNTTC	3 cut(s)	556, 1227, 1953
Asp718I	GGTACC	1 cut(s)	1641
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	544, 1186, 1195
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	80, 407, 1277
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	3 cut(s)	544, 1186, 1195
AxyI	CCTNAGG	2 cut(s)	1092, 2175
BaeGI	GKGCMC	1 cut(s)	2041
BalI	TGGCCA	1 cut(s)	1019
BamHI	GGATCC	1 cut(s)	2198
BanI	GGYRCC	1 cut(s)	1641
BbsI	GAAGAC	3 cut(s)	933, 967, 1879
Bbv12I	GWGCWC	4 cut(s)	618, 2041, 2095, 2226
BbvI	GCAGC	3 cut(s)	241, 673, 1618
BccI	CCATC	8 cut(s)	24, 205, 214, 374, 1599, 1606, 1643, 2189
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	5 cut(s)	27, 515, 548, 1263, 1646
BclI	TGATCA	4 cut(s)	463, 1072, 1518, 1525
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	488, 1070
BfaI	CTAG	7 cut(s)	111, 227, 237, 357, 756, 984, 1311
BfmI	CTRYAG	1 cut(s)	1506
BfoI	RGCGCY	1 cut(s)	227
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	4 cut(s)	252, 255, 687, 1607
BlsI	GCNGC	4 cut(s)	253, 256, 688, 1608
BmcAI	AGTACT	1 cut(s)	1326
Bme1390I	CCNGG	6 cut(s)	27, 83, 515, 548, 1263, 1646
Bme18I	GGWCC	3 cut(s)	544, 1186, 1195
BmgT120I	GGNCC	3 cut(s)	544, 1186, 1195
BmiI	GGNNCC	2 cut(s)	1643, 2200
BmrFI	CCNGG	6 cut(s)	27, 83, 515, 548, 1263, 1646
BmrI	ACTGGG	1 cut(s)	1564
BmtI	GCTAGC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	1564
BpiI	GAAGAC	3 cut(s)	933, 967, 1879
BpmI	CTGGAG	1 cut(s)	2259
BpuEI	CTTGAG	4 cut(s)	610, 916, 1705, 2273
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	744, 1931
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	6 cut(s)	25, 514, 547, 1637, 1744, 2119
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	6 cut(s)	416, 689, 1750, 2040, 2041, 2209
Bse1I	ACTGG	3 cut(s)	55, 794, 1559
Bse21I	CCTNAGG	2 cut(s)	1092, 2175
Bse3DI	GCAATG	3 cut(s)	886, 1122, 2147
Bse8I	GATNNNNATC	2 cut(s)	744, 1931
BseBI	CCWGG	5 cut(s)	27, 515, 548, 1263, 1646
BseDI	CCNNGG	6 cut(s)	25, 514, 547, 1637, 1744, 2119
BseJI	GATNNNNATC	2 cut(s)	744, 1931
BseLI	CCNNNNNNNGG	6 cut(s)	416, 689, 1750, 2040, 2041, 2209
BseMI	GCAATG	3 cut(s)	886, 1122, 2147
BseMII	CTCAG	5 cut(s)	318, 447, 543, 1428, 2166
BseNI	ACTGG	3 cut(s)	55, 794, 1559
BseRI	GAGGAG	7 cut(s)	326, 329, 332, 335, 338, 1396, 2234
BseSI	GKGCMC	1 cut(s)	2041
BseXI	GCAGC	3 cut(s)	241, 673, 1618
BsgI	GTGCAG	1 cut(s)	1717
Bsh1236I	CGCG	2 cut(s)	492, 2121
BshFI	GGCC	3 cut(s)	18, 1019, 1636
BshNI	GGYRCC	1 cut(s)	1641
BsiHKAI	GWGCWC	4 cut(s)	618, 2041, 2095, 2226
BsiSI	CCGG	3 cut(s)	82, 2153, 2248
BslFI	GGGAC	1 cut(s)	1571
BslI	CCNNNNNNNGG	6 cut(s)	416, 689, 1750, 2040, 2041, 2209
BsmAI	GTCTC	2 cut(s)	488, 1070
BsmFI	GGGAC	1 cut(s)	1571
BsmI	GAATGC	1 cut(s)	1990
BsnI	GGCC	3 cut(s)	18, 1019, 1636
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	4 cut(s)	618, 2041, 2095, 2226
Bsp1407I	TGTACA	2 cut(s)	604, 1395
Bsp19I	CCATGG	1 cut(s)	1637
BspACI	CCGC	8 cut(s)	104, 251, 490, 1822, 1917, 2065, 2119, 2121
BspANI	GGCC	3 cut(s)	18, 1019, 1636
BspCNI	CTCAG	5 cut(s)	317, 448, 542, 1427, 2167
BspFNI	CGCG	2 cut(s)	492, 2121
BspHI	TCATGA	1 cut(s)	2005
BspLI	GGNNCC	2 cut(s)	1643, 2200
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	6 cut(s)	425, 925, 1096, 2110, 2193, 2206
BspT107I	GGYRCC	1 cut(s)	1641
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	3 cut(s)	886, 1122, 2147
BsrGI	TGTACA	2 cut(s)	604, 1395
BsrI	ACTGG	3 cut(s)	55, 794, 1559
BssECI	CCNNGG	6 cut(s)	25, 514, 547, 1637, 1744, 2119
BssT1I	CCWWGG	1 cut(s)	1637
Bst2UI	CCWGG	5 cut(s)	27, 515, 548, 1263, 1646
Bst4CI	ACNGT	4 cut(s)	609, 1400, 1745, 2221
Bst6I	CTCTTC	4 cut(s)	303, 866, 1218, 1373
BstAUI	TGTACA	2 cut(s)	604, 1395
BstC8I	GCNNGC	4 cut(s)	112, 684, 1120, 2215
BstDEI	CTNAG	9 cut(s)	304, 456, 529, 1038, 1092, 1414, 1602, 1881, 2175
BstDSI	CCRYGG	3 cut(s)	1637, 1744, 2119
BstEII	GGTNACC	1 cut(s)	1265
BstFNI	CGCG	2 cut(s)	492, 2121
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	488, 1070
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 575, 1016, 1124, 1633
BstNI	CCWGG	5 cut(s)	27, 515, 548, 1263, 1646
BstNSI	RCATGY	2 cut(s)	1658, 2217
BstPI	GGTNACC	1 cut(s)	1265
BstSCI	CCNGG	6 cut(s)	25, 81, 513, 546, 1261, 1644
BstSFI	CTRYAG	1 cut(s)	1506
BstSLI	GKGCMC	1 cut(s)	2041
BstUI	CGCG	2 cut(s)	492, 2121
BstV1I	GCAGC	3 cut(s)	241, 673, 1618
BstV2I	GAAGAC	3 cut(s)	933, 967, 1879
BstX2I	RGATCY	4 cut(s)	430, 988, 2115, 2198
BstXI	CCANNNNNNTGG	2 cut(s)	163, 1277
BstYI	RGATCY	4 cut(s)	430, 988, 2115, 2198
Bsu36I	CCTNAGG	2 cut(s)	1092, 2175
BsuRI	GGCC	3 cut(s)	18, 1019, 1636
BtgI	CCRYGG	3 cut(s)	1637, 1744, 2119
BtsI	GCAGTG	1 cut(s)	1729
BtsIMutI	CAGTG	3 cut(s)	787, 1405, 1729
Cac8I	GCNNGC	4 cut(s)	112, 684, 1120, 2215
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	2005
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	544, 1186, 1195
Cfr42I	CCGCGG	1 cut(s)	2122
CseI	GACGC	2 cut(s)	825, 1977
CsiI	ACCWGGT	1 cut(s)	1261
Csp6I	GTAC	6 cut(s)	605, 1325, 1396, 1642, 1796, 1805
CviQI	GTAC	6 cut(s)	605, 1325, 1396, 1642, 1796, 1805
DdeI	CTNAG	9 cut(s)	304, 456, 529, 1038, 1092, 1414, 1602, 1881, 2175
DraIII	CACNNNGTG	2 cut(s)	1133, 1265
DrdI	GACNNNNNNGTC	1 cut(s)	935
DseDI	GACNNNNNNGTC	1 cut(s)	935
EaeI	YGGCCR	1 cut(s)	1017
Eam1104I	CTCTTC	4 cut(s)	303, 866, 1218, 1373
EarI	CTCTTC	4 cut(s)	303, 866, 1218, 1373
Eco130I	CCWWGG	1 cut(s)	1637
Eco31I	GGTCTC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	1621
Eco47I	GGWCC	3 cut(s)	544, 1186, 1195
Eco57I	CTGAAG	3 cut(s)	788, 961, 1149
Eco81I	CCTNAGG	2 cut(s)	1092, 2175
Eco91I	GGTNACC	1 cut(s)	1265
EcoO109I	RGGNCCY	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	1265
EcoRI	GAATTC	1 cut(s)	2124
EcoRII	CCWGG	5 cut(s)	25, 513, 546, 1261, 1644
EcoRV	GATATC	1 cut(s)	1621
EcoT14I	CCWWGG	1 cut(s)	1637
EcoT22I	ATGCAT	4 cut(s)	580, 949, 960, 1660
ErhI	CCWWGG	1 cut(s)	1637
FalI	AAGNNNNNCTT	8 cut(s)	887, 919, 1215, 1247, 1767, 1799, 1782, 1814
FaqI	GGGAC	1 cut(s)	1571
FauI	CCCGC	1 cut(s)	1910
FbaI	TGATCA	4 cut(s)	463, 1072, 1518, 1525
FblI	GTMKAC	1 cut(s)	1491
Fnu4HI	GCNGC	4 cut(s)	252, 255, 687, 1607
Fsp4HI	GCNGC	4 cut(s)	252, 255, 687, 1607
FspBI	CTAG	7 cut(s)	111, 227, 237, 357, 756, 984, 1311
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	4 cut(s)	252, 255, 687, 1607
GsuI	CTGGAG	1 cut(s)	2259
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	18, 1019, 1636
HapII	CCGG	3 cut(s)	82, 2153, 2248
HgaI	GACGC	2 cut(s)	825, 1977
HhaI	GCGC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	624, 1492
HindII	GTYRAC	2 cut(s)	624, 1492
HinfI	GANTC	9 cut(s)	152, 296, 302, 350, 503, 527, 552, 752, 929
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	3 cut(s)	82, 2153, 2248
HphI	GGTGA	3 cut(s)	80, 407, 1277
Hpy166II	GTNNAC	6 cut(s)	605, 624, 1186, 1374, 1492, 2039
Hpy8I	GTNNAC	6 cut(s)	605, 624, 1186, 1374, 1492, 2039
HpyAV	CCTTC	6 cut(s)	278, 383, 1173, 1744, 2002, 2051
HpyCH4III	ACNGT	4 cut(s)	609, 1400, 1745, 2221
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 575, 1016, 1124, 1633
HpyF3I	CTNAG	9 cut(s)	304, 456, 529, 1038, 1092, 1414, 1602, 1881, 2175
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	1645
Ksp22I	TGATCA	4 cut(s)	463, 1072, 1518, 1525
KspAI	GTTAAC	1 cut(s)	624
KspI	CCGCGG	1 cut(s)	2122
LmnI	GCTCC	3 cut(s)	613, 1383, 2278
Lsp1109I	GCAGC	3 cut(s)	241, 673, 1618
MabI	ACCWGGT	1 cut(s)	1261
MaeI	CTAG	7 cut(s)	111, 227, 237, 357, 756, 984, 1311
MaeIII	GTNAC	6 cut(s)	293, 359, 395, 1265, 1313, 1977
MflI	RGATCY	4 cut(s)	430, 988, 2115, 2198
MhlI	GDGCHC	4 cut(s)	618, 2041, 2095, 2226
MlsI	TGGCCA	1 cut(s)	1019
MluNI	TGGCCA	1 cut(s)	1019
MlyI	GAGTC	5 cut(s)	290, 296, 497, 521, 923
MmeI	TCCRAC	3 cut(s)	549, 591, 774
Mox20I	TGGCCA	1 cut(s)	1019
Mph1103I	ATGCAT	4 cut(s)	580, 949, 960, 1660
MroXI	GAANNNNTTC	3 cut(s)	556, 1227, 1953
MscI	TGGCCA	1 cut(s)	1019
MseI	TTAA	8 cut(s)	623, 744, 1140, 1179, 1586, 1722, 2135, 2184
MslI	CAYNNNNRTG	3 cut(s)	583, 1533, 2010
Msp20I	TGGCCA	1 cut(s)	1019
MspA1I	CMGCKG	2 cut(s)	1822, 2121
MspI	CCGG	3 cut(s)	82, 2153, 2248
MspR9I	CCNGG	6 cut(s)	27, 83, 515, 548, 1263, 1646
Mva1269I	GAATGC	1 cut(s)	1990
MvaI	CCWGG	5 cut(s)	27, 515, 548, 1263, 1646
MvnI	CGCG	2 cut(s)	492, 2121
MwoI	GCNNNNNNNGC	5 cut(s)	251, 575, 1016, 1124, 1633
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	1637
NheI	GCTAGC	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	1643, 2200
NmuCI	GTSAC	6 cut(s)	293, 359, 395, 1265, 1313, 1977
NsiI	ATGCAT	4 cut(s)	580, 949, 960, 1660
NspI	RCATGY	2 cut(s)	1658, 2217
PaeI	GCATGC	1 cut(s)	2217
PagI	TCATGA	1 cut(s)	2005
PctI	GAATGC	1 cut(s)	1990
PdmI	GAANNNNTTC	3 cut(s)	556, 1227, 1953
PfeI	GAWTC	4 cut(s)	152, 350, 552, 752
PflMI	CCANNNNNTGG	1 cut(s)	2209
PkrI	GCNGC	4 cut(s)	253, 256, 688, 1608
PleI	GAGTC	5 cut(s)	290, 296, 497, 521, 923
PpsI	GAGTC	5 cut(s)	290, 296, 497, 521, 923
PpuMI	RGGWCCY	1 cut(s)	544
PsiI	TTATAA	2 cut(s)	189, 1541
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	5 cut(s)	25, 513, 546, 1261, 1644
PspEI	GGTNACC	1 cut(s)	1265
PspGI	CCWGG	5 cut(s)	25, 513, 546, 1261, 1644
PspN4I	GGNNCC	2 cut(s)	1643, 2200
PspPI	GGNCC	3 cut(s)	544, 1186, 1195
PspPPI	RGGWCCY	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	4 cut(s)	430, 988, 2115, 2198
RsaI	GTAC	6 cut(s)	606, 1326, 1397, 1643, 1797, 1806
RsaNI	GTAC	6 cut(s)	605, 1325, 1396, 1642, 1796, 1805
RseI	CAYNNNNRTG	3 cut(s)	583, 1533, 2010
SacII	CCGCGG	1 cut(s)	2122
SalI	GTCGAC	1 cut(s)	1490
SaqAI	TTAA	8 cut(s)	623, 744, 1140, 1179, 1586, 1722, 2135, 2184
SatI	GCNGC	4 cut(s)	252, 255, 687, 1607
Sau96I	GGNCC	3 cut(s)	544, 1186, 1195
ScaI	AGTACT	1 cut(s)	1326
SchI	GAGTC	5 cut(s)	290, 296, 497, 521, 923
ScrFI	CCNGG	6 cut(s)	27, 83, 515, 548, 1263, 1646
SduI	GDGCHC	4 cut(s)	618, 2041, 2095, 2226
SexAI	ACCWGGT	1 cut(s)	1261
SfcI	CTRYAG	1 cut(s)	1506
Sfr303I	CCGCGG	1 cut(s)	2122
SgrBI	CCGCGG	1 cut(s)	2122
SinI	GGWCC	3 cut(s)	544, 1186, 1195
SmiMI	CAYNNNNRTG	3 cut(s)	583, 1533, 2010
SmlI	CTYRAG	4 cut(s)	589, 931, 1684, 2252
SmoI	CTYRAG	4 cut(s)	589, 931, 1684, 2252
SphI	GCATGC	1 cut(s)	2217
SsiI	CCGC	8 cut(s)	104, 251, 490, 1822, 1917, 2065, 2119, 2121
SspI	AATATT	1 cut(s)	1849
SspMI	CTAG	7 cut(s)	111, 227, 237, 357, 756, 984, 1311
StyD4I	CCNGG	6 cut(s)	25, 81, 513, 546, 1261, 1644
StyI	CCWWGG	1 cut(s)	1637
TaaI	ACNGT	4 cut(s)	609, 1400, 1745, 2221
TaqI	TCGA	3 cut(s)	1304, 1491, 2297
TaqII	GACCGA	1 cut(s)	1212
TatI	WGTACW	3 cut(s)	604, 1324, 1395
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	4 cut(s)	152, 350, 552, 752
Tru1I	TTAA	8 cut(s)	623, 744, 1140, 1179, 1586, 1722, 2135, 2184
Tru9I	TTAA	8 cut(s)	623, 744, 1140, 1179, 1586, 1722, 2135, 2184
TscAI	CASTG	3 cut(s)	794, 1405, 1736
TseFI	GTSAC	6 cut(s)	293, 359, 395, 1265, 1313, 1977
TseI	GCWGC	3 cut(s)	254, 686, 1606
Tsp45I	GTSAC	6 cut(s)	293, 359, 395, 1265, 1313, 1977
TspGWI	ACGGA	1 cut(s)	1058
TspRI	CASTG	3 cut(s)	794, 1405, 1736
Van91I	CCANNNNNTGG	1 cut(s)	2209
VneI	GTGCAC	1 cut(s)	2037
VpaK11BI	GGWCC	3 cut(s)	544, 1186, 1195
XapI	RAATTY	5 cut(s)	404, 2124, 2131, 2165, 2305
XceI	RCATGY	2 cut(s)	1658, 2217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1328
XmiI	GTMKAC	1 cut(s)	1491
XmnI	GAANNNNTTC	3 cut(s)	556, 1227, 1953
XspI	CTAG	7 cut(s)	111, 227, 237, 357, 756, 984, 1311
ZrmI	AGTACT	1 cut(s)	1326
Zsp2I	ATGCAT	4 cut(s)	580, 949, 960, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.