Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005811

Physical Location & Seq

Genomic Coordinates Reverse (-)

14202581 .. 14217857

Gene Structure 15277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG094400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGCCCAACAAGTTCCAGAAAGCTGGGAAAAGTCGCCGGGTTGAAGAAGAAAAGGTTGCGCCAGCTAGCCCCTCATCTACTTCATCAGGGGAACTGCCAGAGGAAGAATCCAATGGTGTGGCTTCCGAAGAAGAAGTAGTTTATAAAGAGCCATCAATGTATGACAAATTGTTGATGGCCCTAGGGTCATCTAGTAAAGCTGTTGCGGCTGCCTATAAGCAGAGAAAAAGACAAGAAGAAGGTAAAAGTGACTCGGACTCAGAAGAGGAGGAGGATGATGACGACGATGACGGAACTGAATCTTCTAGTGACTTGGAAGAAGTAGATGATGGTGAAGAAGGGGGTGACAATTTTCCAATGAAAGGAAAACTGAAAGATCCGGCAAGTGAAGATGCAAAAACTGAGGATGATCAGGACACCTCTGACATGGATGGCCGCAAGACCTCTGACTCAGATGACCAGGGGATGTCTGACTCAGATGCAGAACAGGACCTGGGAATCCATTCTCAATCTGCTATTGATGCATCAATATGCTTGAGTTCCTTTGGTGTACAGTTGGAGCACAAGTTAACAGAAGCAGAGGTTGAAAATCTGGCAAAAAAGAAATGGAGATATAAATGGGATGTGCCTGCTGCTGGAATGTCAAAGGGCAAATGGGCAGGAACGGGAGAGTGTTGCATAAAAGATGTTAATCCTGATTCTAGTTATGATCTGAAGCAAAAGTTGTATAAGCACTGGTTGGATGTATATAACACATCTGGACGCAAGGATTTTCATTTGTCCAGACAAAGATTGTTCTTCTCCCTCTTCAATAGTTATCGGGATATACTGCATTGCAACAAGAAACCCTTTTATCACAGAGGATCAGAAGAAGACTCAAGTGTCATGGATGCATATATTATGCATTGTCTGAACCATATCTTCAGAACTAGAGATCTTGTAATGAAGAATGATGCAAAAGTGGCCAAGCATCAGGAAAATGCTAAGAATGTAATTCTTACTGATGACAGTCTCCGTGATCATGGCTTTACTCGTCCTAAGGTGTTGATCCTACTGCCAATGGCGAGCATTGCACTTCGTGTTGTTAAGAGGATAATACAACTTACCCCGTCAGCTCACAAGGTTAATGTGGACCACATGGACCGATTTTCTAAAGAGTTCGGAAGTGAAGAGGTTCTTGACAACGAAGACGAAAGAGATATACTACCAGGTGACCAGAACTCTGGAAATGTAAAATCTCACAAGTCATCGAAACCTAGTGACTTCCAAGTACTTTTTGGTGGTAATAGCAAGGATGATTTCATGGTTGGCATCAAGTTCACAAAGAGGAGCATAAAGTTGTACAGTGATTTTTATTCCTCAGATATGATAGTTGCTTCTGCTGTTGGTTTGTTGAAAAAAATTGATGAGACTAAAATAAATAAGGAAAAGGATGTTGACTATCTTTCTTCTATAGAGGTTCTGATCATTGATCATGCAGATGTTATAACAATGCAGAACTGGGACTTTTTGAAGTCAGTTGTTGAGCAGTTAAACCATCAACCATCTAAGCAGCATGGAACTGATATCATGCGTATAAGGCCATGGTACCTAGATGGACATGCATCTTTTTATAGGCAAACTATACTTTTGAGTTATTATTCAAACCCAGATATAAACAATTTGTTTAACAAGCACTGCACAAATTACCGTGGGAAGGTGAAGTTGGTGCATGAGTATAAAGGAGTTCTTCCTAAAGTGGTACTTCAAGTACGCCAGATTTTTCAGCGGTTTGAGGGAGATGAAATAGTGAATATTGATGATGCTCGTTTTGAACATTTTGCTACTAAGGTCTTCCCCAAGATAAAAAACTCTGTTGAGGGTGGGATTATGATATTTATCAGCTCTTACTTTGAATATGTTCGAGTTCGTAATTTTTTGAAGTCACAGAATGCATCCTTCTGTCTGCTTCATGAATATGCGGAGCAAAAAGATATTTCCCGTGCACGGGTTTGGTTCTTTGAAGGAAAGCGGAAGATCATGCTCTATACAGAGAGAGCACATTTTTACCACAGATATAAGATCCGCGGAATTCAGAATTTAATCGTCTATTCGTTGCCGGAGAGAAAGGAATTTTACCCTGAGGTTGTTAATATGGTTGATGGATCCCATGACATGGCATGCACGGTGCTCTTTTCTCCTTTTGATCTCCTCCGGCTTGAGAGAATTGTGGGAACTGCTCCAGCCAAGAGAATGGTGTCATCAAAAATGAATTTATTTTCTTTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019843 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UTP25

Protein Analysis

756

Amino Acids

86.52

Weight (kDa)

5.8

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UTP25_NTPase-like	PF22916	273 - 567	2.4e-106	UTP25, NTP hydrolase-like domain
Utp25_C	PF06862	578 - 755	6.9e-63	Utp25, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17690
fragaria_vesca	FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640
malus_domestica	MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1
prunus_persica	Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1
pyrus_communis	pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650
rosa_chinensis	RchiOBHm_Chr4g0400251
rosa_laevigata	RLG00000009200
rosa_multiflora	Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345230
rosa_rugosa	Rorug04G0024200 Rorug04G0024300 Rorug04G0024400
rosa_samantha	Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400
rosa_wichuraiana	Rw4G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	144, 1487
AasI	GACNNNNNNGTC	1 cut(s)	881
Acc65I	GGTACC	1 cut(s)	1587
AccB1I	GGYRCC	1 cut(s)	1587
AccB7I	CCANNNNNTGG	1 cut(s)	2155
AccII	CGCG	1 cut(s)	2067
AciI	CCGC	7 cut(s)	206, 436, 1768, 1961, 2011, 2065, 2067
AclWI	GGATC	6 cut(s)	371, 871, 1042, 2056, 2139, 2152
AcoI	YGGCCR	2 cut(s)	433, 963
AcsI	RAATTY	4 cut(s)	2070, 2077, 2111, 2251
AcuI	CTGAAG	2 cut(s)	734, 907
AdeI	CACNNNGTG	1 cut(s)	1079
AfaI	GTAC	6 cut(s)	552, 1272, 1343, 1589, 1743, 1752
AfiI	CCNNNNNNNGG	6 cut(s)	362, 635, 1696, 1986, 1987, 2155
AjnI	CCWGG	3 cut(s)	459, 492, 1207
AjuI	GAANNNNNNNTTGG	2 cut(s)	1688, 1720
AluBI	AGCT	5 cut(s)	23, 65, 200, 1115, 1884
AluI	AGCT	5 cut(s)	23, 65, 200, 1115, 1884
Alw21I	GWGCWC	4 cut(s)	564, 1987, 2041, 2172
Alw26I	GTCTC	2 cut(s)	1016, 1403
Alw44I	GTGCAC	1 cut(s)	1983
AlwI	GGATC	6 cut(s)	371, 871, 1042, 2056, 2139, 2152
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	177, 433, 963, 1580
ApaLI	GTGCAC	1 cut(s)	1983
ApeKI	GCWGC	3 cut(s)	209, 632, 1552
ApoI	RAATTY	4 cut(s)	2070, 2077, 2111, 2251
Asp700I	GAANNNNTTC	3 cut(s)	502, 1173, 1899
Asp718I	GGTACC	1 cut(s)	1587
AspA2I	CCTAGG	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	4 cut(s)	178, 490, 1132, 1141
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	4 cut(s)	344, 356, 1223, 1711
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	3 cut(s)	490, 1132, 1141
AvrII	CCTAGG	1 cut(s)	181
AxyI	CCTNAGG	2 cut(s)	1038, 2121
BaeGI	GKGCMC	1 cut(s)	1987
BalI	TGGCCA	1 cut(s)	965
BamHI	GGATCC	1 cut(s)	2144
BanI	GGYRCC	1 cut(s)	1587
BbsI	GAAGAC	3 cut(s)	879, 1194, 1825
Bbv12I	GWGCWC	4 cut(s)	564, 1987, 2041, 2172
BbvI	GCAGC	3 cut(s)	196, 619, 1564
BccI	CCATC	8 cut(s)	160, 169, 323, 425, 1545, 1552, 1589, 2135
BciT130I	CCWGG	3 cut(s)	461, 494, 1209
BclI	TGATCA	4 cut(s)	409, 1018, 1464, 1471
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	1016, 1403
BfaI	CTAG	8 cut(s)	66, 182, 192, 306, 702, 930, 1257, 1592
BfmI	CTRYAG	1 cut(s)	1452
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	5 cut(s)	207, 210, 436, 633, 1553
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	5 cut(s)	208, 211, 437, 634, 1554
BmcAI	AGTACT	1 cut(s)	1272
Bme1390I	CCNGG	4 cut(s)	38, 461, 494, 1209
Bme18I	GGWCC	3 cut(s)	490, 1132, 1141
BmgT120I	GGNCC	4 cut(s)	178, 490, 1132, 1141
BmiI	GGNNCC	2 cut(s)	1589, 2146
BmrFI	CCNGG	4 cut(s)	38, 461, 494, 1209
BmrI	ACTGGG	1 cut(s)	1510
BmtI	GCTAGC	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	1510
BpiI	GAAGAC	3 cut(s)	879, 1194, 1825
BpmI	CTGGAG	1 cut(s)	2205
BpuEI	CTTGAG	3 cut(s)	556, 862, 2219
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	2 cut(s)	690, 1877
BsaJI	CCNNGG	6 cut(s)	181, 460, 493, 1583, 1690, 2065
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	6 cut(s)	362, 635, 1696, 1986, 1987, 2155
Bse1I	ACTGG	2 cut(s)	740, 1505
Bse21I	CCTNAGG	2 cut(s)	1038, 2121
Bse3DI	GCAATG	2 cut(s)	832, 1068
Bse8I	GATNNNNATC	2 cut(s)	690, 1877
BseBI	CCWGG	3 cut(s)	461, 494, 1209
BseDI	CCNNGG	6 cut(s)	181, 460, 493, 1583, 1690, 2065
BseJI	GATNNNNATC	2 cut(s)	690, 1877
BseLI	CCNNNNNNNGG	6 cut(s)	362, 635, 1696, 1986, 1987, 2155
BseMI	GCAATG	2 cut(s)	832, 1068
BseMII	CTCAG	6 cut(s)	273, 393, 465, 489, 1374, 2112
BseNI	ACTGG	2 cut(s)	740, 1505
BseRI	GAGGAG	4 cut(s)	281, 284, 1342, 2180
BseSI	GKGCMC	1 cut(s)	1987
BseXI	GCAGC	3 cut(s)	196, 619, 1564
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	1663
Bsh1236I	CGCG	1 cut(s)	2067
BshFI	GGCC	4 cut(s)	179, 435, 965, 1582
BshNI	GGYRCC	1 cut(s)	1587
BsiHKAI	GWGCWC	4 cut(s)	564, 1987, 2041, 2172
BsiSI	CCGG	4 cut(s)	37, 380, 2099, 2194
BslFI	GGGAC	1 cut(s)	1517
BslI	CCNNNNNNNGG	6 cut(s)	362, 635, 1696, 1986, 1987, 2155
BsmAI	GTCTC	2 cut(s)	1016, 1403
BsmFI	GGGAC	1 cut(s)	1517
BsmI	GAATGC	1 cut(s)	1936
BsnI	GGCC	4 cut(s)	179, 435, 965, 1582
Bsp1286I	GDGCHC	4 cut(s)	564, 1987, 2041, 2172
Bsp1407I	TGTACA	2 cut(s)	550, 1341
Bsp19I	CCATGG	1 cut(s)	1583
BspACI	CCGC	7 cut(s)	206, 436, 1768, 1961, 2011, 2065, 2067
BspANI	GGCC	4 cut(s)	179, 435, 965, 1582
BspCNI	CTCAG	6 cut(s)	272, 394, 464, 488, 1373, 2113
BspFNI	CGCG	1 cut(s)	2067
BspHI	TCATGA	1 cut(s)	1951
BspLI	GGNNCC	2 cut(s)	1589, 2146
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	6 cut(s)	371, 871, 1042, 2056, 2139, 2152
BspT107I	GGYRCC	1 cut(s)	1587
BsrDI	GCAATG	2 cut(s)	832, 1068
BsrGI	TGTACA	2 cut(s)	550, 1341
BsrI	ACTGG	2 cut(s)	740, 1505
BssECI	CCNNGG	6 cut(s)	181, 460, 493, 1583, 1690, 2065
BssT1I	CCWWGG	2 cut(s)	181, 1583
Bst2UI	CCWGG	3 cut(s)	461, 494, 1209
Bst4CI	ACNGT	5 cut(s)	555, 1010, 1346, 1691, 2167
Bst6I	CTCTTC	3 cut(s)	258, 812, 1164
BstAUI	TGTACA	2 cut(s)	550, 1341
BstC8I	GCNNGC	5 cut(s)	63, 67, 630, 1066, 2161
BstDSI	CCRYGG	3 cut(s)	1583, 1690, 2065
BstEII	GGTNACC	1 cut(s)	1211
BstFNI	CGCG	1 cut(s)	2067
BstHHI	GCGC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	1016, 1403
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 521, 962, 1070, 1579
BstNI	CCWGG	3 cut(s)	461, 494, 1209
BstNSI	RCATGY	2 cut(s)	1604, 2163
BstPI	GGTNACC	1 cut(s)	1211
BstSCI	CCNGG	4 cut(s)	36, 459, 492, 1207
BstSFI	CTRYAG	1 cut(s)	1452
BstSLI	GKGCMC	1 cut(s)	1987
BstUI	CGCG	1 cut(s)	2067
BstV1I	GCAGC	3 cut(s)	196, 619, 1564
BstV2I	GAAGAC	3 cut(s)	879, 1194, 1825
BstX2I	RGATCY	4 cut(s)	376, 934, 2061, 2144
BstXI	CCANNNNNNTGG	4 cut(s)	23, 118, 1223, 2233
BstYI	RGATCY	4 cut(s)	376, 934, 2061, 2144
Bsu36I	CCTNAGG	2 cut(s)	1038, 2121
BsuRI	GGCC	4 cut(s)	179, 435, 965, 1582
BtgI	CCRYGG	3 cut(s)	1583, 1690, 2065
BtsI	GCAGTG	1 cut(s)	1675
BtsIMutI	CAGTG	3 cut(s)	733, 1351, 1675
Cac8I	GCNNGC	5 cut(s)	63, 67, 630, 1066, 2161
CaiI	CAGNNNCTG	1 cut(s)	493
CciI	TCATGA	1 cut(s)	1951
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	4 cut(s)	178, 490, 1132, 1141
Cfr42I	CCGCGG	1 cut(s)	2068
CseI	GACGC	1 cut(s)	771
CsiI	ACCWGGT	1 cut(s)	1207
Csp6I	GTAC	6 cut(s)	551, 1271, 1342, 1588, 1742, 1751
CviQI	GTAC	6 cut(s)	551, 1271, 1342, 1588, 1742, 1751
DraIII	CACNNNGTG	1 cut(s)	1079
DrdI	GACNNNNNNGTC	1 cut(s)	881
DseDI	GACNNNNNNGTC	1 cut(s)	881
EaeI	YGGCCR	2 cut(s)	433, 963
Eam1104I	CTCTTC	3 cut(s)	258, 812, 1164
EarI	CTCTTC	3 cut(s)	258, 812, 1164
Eco130I	CCWWGG	2 cut(s)	181, 1583
Eco32I	GATATC	1 cut(s)	1567
Eco47I	GGWCC	3 cut(s)	490, 1132, 1141
Eco57I	CTGAAG	2 cut(s)	734, 907
Eco81I	CCTNAGG	2 cut(s)	1038, 2121
Eco91I	GGTNACC	1 cut(s)	1211
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	1211
EcoRI	GAATTC	1 cut(s)	2070
EcoRII	CCWGG	3 cut(s)	459, 492, 1207
EcoRV	GATATC	1 cut(s)	1567
EcoT14I	CCWWGG	2 cut(s)	181, 1583
EcoT22I	ATGCAT	5 cut(s)	526, 895, 906, 1606, 1936
ErhI	CCWWGG	2 cut(s)	181, 1583
FalI	AAGNNNNNCTT	8 cut(s)	833, 865, 1161, 1193, 1713, 1745, 1728, 1760
FaqI	GGGAC	1 cut(s)	1517
FbaI	TGATCA	4 cut(s)	409, 1018, 1464, 1471
Fnu4HI	GCNGC	5 cut(s)	207, 210, 436, 633, 1553
Fsp4HI	GCNGC	5 cut(s)	207, 210, 436, 633, 1553
FspBI	CTAG	8 cut(s)	66, 182, 192, 306, 702, 930, 1257, 1592
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	5 cut(s)	207, 210, 436, 633, 1553
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	2205
HaeIII	GGCC	4 cut(s)	179, 435, 965, 1582
HapII	CCGG	4 cut(s)	37, 380, 2099, 2194
HgaI	GACGC	1 cut(s)	771
HhaI	GCGC	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	570, 1438
HindII	GTYRAC	2 cut(s)	570, 1438
HinfI	GANTC	9 cut(s)	107, 251, 257, 299, 449, 473, 498, 698, 875
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	4 cut(s)	37, 380, 2099, 2194
HphI	GGTGA	4 cut(s)	344, 356, 1223, 1711
Hpy166II	GTNNAC	6 cut(s)	551, 570, 1132, 1320, 1438, 1985
Hpy8I	GTNNAC	6 cut(s)	551, 570, 1132, 1320, 1438, 1985
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	233, 332, 1690, 1948, 1997
HpyCH4III	ACNGT	5 cut(s)	555, 1010, 1346, 1691, 2167
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 521, 962, 1070, 1579
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	1591
Ksp22I	TGATCA	4 cut(s)	409, 1018, 1464, 1471
KspAI	GTTAAC	1 cut(s)	570
KspI	CCGCGG	1 cut(s)	2068
LmnI	GCTCC	4 cut(s)	559, 1329, 1963, 2224
Lsp1109I	GCAGC	3 cut(s)	196, 619, 1564
MabI	ACCWGGT	1 cut(s)	1207
MaeI	CTAG	8 cut(s)	66, 182, 192, 306, 702, 930, 1257, 1592
MaeIII	GTNAC	6 cut(s)	248, 308, 344, 1211, 1259, 1923
MflI	RGATCY	4 cut(s)	376, 934, 2061, 2144
MhlI	GDGCHC	4 cut(s)	564, 1987, 2041, 2172
MlsI	TGGCCA	1 cut(s)	965
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	5 cut(s)	245, 251, 443, 467, 869
MmeI	TCCRAC	2 cut(s)	537, 720
Mox20I	TGGCCA	1 cut(s)	965
Mph1103I	ATGCAT	5 cut(s)	526, 895, 906, 1606, 1936
MroXI	GAANNNNTTC	3 cut(s)	502, 1173, 1899
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	8 cut(s)	569, 690, 1086, 1125, 1532, 1668, 2081, 2130
MslI	CAYNNNNRTG	3 cut(s)	529, 1479, 1956
Msp20I	TGGCCA	1 cut(s)	965
MspA1I	CMGCKG	2 cut(s)	1768, 2067
MspI	CCGG	4 cut(s)	37, 380, 2099, 2194
MspR9I	CCNGG	4 cut(s)	38, 461, 494, 1209
Mva1269I	GAATGC	1 cut(s)	1936
MvaI	CCWGG	3 cut(s)	461, 494, 1209
MvnI	CGCG	1 cut(s)	2067
MwoI	GCNNNNNNNGC	5 cut(s)	206, 521, 962, 1070, 1579
NciI	CCSGG	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	1583
NheI	GCTAGC	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	1589, 2146
NmuCI	GTSAC	6 cut(s)	248, 308, 344, 1211, 1259, 1923
NsiI	ATGCAT	5 cut(s)	526, 895, 906, 1606, 1936
NspI	RCATGY	2 cut(s)	1604, 2163
PaeI	GCATGC	1 cut(s)	2163
PagI	TCATGA	1 cut(s)	1951
PctI	GAATGC	1 cut(s)	1936
PdmI	GAANNNNTTC	3 cut(s)	502, 1173, 1899
PfeI	GAWTC	4 cut(s)	107, 299, 498, 698
PflMI	CCANNNNNTGG	1 cut(s)	2155
PkrI	GCNGC	5 cut(s)	208, 211, 437, 634, 1554
PleI	GAGTC	5 cut(s)	245, 251, 443, 467, 869
PpsI	GAGTC	5 cut(s)	245, 251, 443, 467, 869
PpuMI	RGGWCCY	1 cut(s)	490
PsiI	TTATAA	2 cut(s)	144, 1487
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	459, 492, 1207
PspEI	GGTNACC	1 cut(s)	1211
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	3 cut(s)	459, 492, 1207
PspN4I	GGNNCC	2 cut(s)	1589, 2146
PspPI	GGNCC	4 cut(s)	178, 490, 1132, 1141
PspPPI	RGGWCCY	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	4 cut(s)	376, 934, 2061, 2144
RsaI	GTAC	6 cut(s)	552, 1272, 1343, 1589, 1743, 1752
RsaNI	GTAC	6 cut(s)	551, 1271, 1342, 1588, 1742, 1751
RseI	CAYNNNNRTG	3 cut(s)	529, 1479, 1956
SacII	CCGCGG	1 cut(s)	2068
SaqAI	TTAA	8 cut(s)	569, 690, 1086, 1125, 1532, 1668, 2081, 2130
SatI	GCNGC	5 cut(s)	207, 210, 436, 633, 1553
Sau96I	GGNCC	4 cut(s)	178, 490, 1132, 1141
ScaI	AGTACT	1 cut(s)	1272
SchI	GAGTC	5 cut(s)	245, 251, 443, 467, 869
ScrFI	CCNGG	4 cut(s)	38, 461, 494, 1209
SduI	GDGCHC	4 cut(s)	564, 1987, 2041, 2172
SexAI	ACCWGGT	1 cut(s)	1207
SfcI	CTRYAG	1 cut(s)	1452
Sfr303I	CCGCGG	1 cut(s)	2068
SgrBI	CCGCGG	1 cut(s)	2068
SinI	GGWCC	3 cut(s)	490, 1132, 1141
SmiMI	CAYNNNNRTG	3 cut(s)	529, 1479, 1956
SmlI	CTYRAG	3 cut(s)	535, 877, 2198
SmoI	CTYRAG	3 cut(s)	535, 877, 2198
SphI	GCATGC	1 cut(s)	2163
SsiI	CCGC	7 cut(s)	206, 436, 1768, 1961, 2011, 2065, 2067
SspI	AATATT	1 cut(s)	1795
SspMI	CTAG	8 cut(s)	66, 182, 192, 306, 702, 930, 1257, 1592
StyD4I	CCNGG	4 cut(s)	36, 459, 492, 1207
StyI	CCWWGG	2 cut(s)	181, 1583
TaaI	ACNGT	5 cut(s)	555, 1010, 1346, 1691, 2167
TaqI	TCGA	2 cut(s)	1250, 1903
TaqII	GACCGA	1 cut(s)	1158
TatI	WGTACW	3 cut(s)	550, 1270, 1341
TauI	GCSGC	2 cut(s)	209, 438
TfiI	GAWTC	4 cut(s)	107, 299, 498, 698
Tru1I	TTAA	8 cut(s)	569, 690, 1086, 1125, 1532, 1668, 2081, 2130
Tru9I	TTAA	8 cut(s)	569, 690, 1086, 1125, 1532, 1668, 2081, 2130
TscAI	CASTG	3 cut(s)	740, 1351, 1682
TseFI	GTSAC	6 cut(s)	248, 308, 344, 1211, 1259, 1923
TseI	GCWGC	3 cut(s)	209, 632, 1552
Tsp45I	GTSAC	6 cut(s)	248, 308, 344, 1211, 1259, 1923
TspDTI	ATGAA	9 cut(s)	72, 374, 764, 959, 1291, 1797, 1940, 1968, 2264
TspGWI	ACGGA	2 cut(s)	306, 1004
TspRI	CASTG	3 cut(s)	740, 1351, 1682
Van91I	CCANNNNNTGG	1 cut(s)	2155
VneI	GTGCAC	1 cut(s)	1983
VpaK11BI	GGWCC	3 cut(s)	490, 1132, 1141
XapI	RAATTY	4 cut(s)	2070, 2077, 2111, 2251
XceI	RCATGY	2 cut(s)	1604, 2163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1274
XmaJI	CCTAGG	1 cut(s)	181
XmnI	GAANNNNTTC	3 cut(s)	502, 1173, 1899
XspI	CTAG	8 cut(s)	66, 182, 192, 306, 702, 930, 1257, 1592
ZrmI	AGTACT	1 cut(s)	1272
Zsp2I	ATGCAT	5 cut(s)	526, 895, 906, 1606, 1936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.