U3 small nucleolar RNA-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17690 |
| fragaria_vesca | FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 FvH4_4g07640 |
| malus_domestica | MD03G1036400.v1.1 MD13G1251100.v1.1 MD13G1251200.v1.1 |
| prunus_persica | Prupe.1G079600_v2.0.a1 Prupe.1G079600_v2.0.a1 |
| pyrus_communis | pycom03g02780 pycom13g21610 pycom13g22640 pycom13g22650 |
| rosa_chinensis | RchiOBHm_Chr4g0400251 |
| rosa_laevigata | RLG00000009200 |
| rosa_multiflora | Rmu_co7994400.1_g000001 Rmu_sc0003908.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00345230 |
| rosa_rugosa | Rorug04G0024200 Rorug04G0024300 Rorug04G0024400 |
| rosa_samantha | Rh4AG099900 Rh4AG100300 Rh4BG097500 Rh4CG109100 Rh4DG094400 |
| rosa_wichuraiana | Rw4G008260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 186, 1508 |
| Acc65I | GGTACC | 1 cut(s) | 1608 |
| AccB1I | GGYRCC | 1 cut(s) | 1608 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 32, 2173 |
| AccI | GTMKAC | 2 cut(s) | 1268, 1458 |
| AccII | CGCG | 1 cut(s) | 899 |
| AciI | CCGC | 3 cut(s) | 1774, 1789, 2032 |
| AclWI | GGATC | 2 cut(s) | 1170, 1203 |
| AcsI | RAATTY | 7 cut(s) | 377, 1014, 1221, 1933, 2091, 2098, 2132 |
| AcuI | CTGAAG | 5 cut(s) | 189, 755, 928, 1116, 1209 |
| AdeI | CACNNNGTG | 1 cut(s) | 1100 |
| AfaI | GTAC | 7 cut(s) | 507, 573, 749, 1293, 1364, 1610, 1764 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 32, 389, 656, 722, 1635, 1717, 2173 |
| AjnI | CCWGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1709, 1741 |
| AluBI | AGCT | 5 cut(s) | 17, 492, 837, 1123, 1136 |
| AluI | AGCT | 5 cut(s) | 17, 492, 837, 1123, 1136 |
| Alw21I | GWGCWC | 4 cut(s) | 494, 1158, 2008, 2190 |
| Alw26I | GTCTC | 1 cut(s) | 458 |
| Alw44I | GTGCAC | 1 cut(s) | 2004 |
| AlwI | GGATC | 2 cut(s) | 1170, 1203 |
| Ama87I | CYCGRG | 1 cut(s) | 499 |
| ApaLI | GTGCAC | 1 cut(s) | 2004 |
| ApeKI | GCWGC | 3 cut(s) | 248, 251, 1573 |
| ApoI | RAATTY | 7 cut(s) | 377, 1014, 1221, 1933, 2091, 2098, 2132 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1853, 1920 |
| Asp718I | GGTACC | 1 cut(s) | 1608 |
| AsuHPI | GGTGA | 4 cut(s) | 1244, 1292, 1732, 2266 |
| AvaI | CYCGRG | 1 cut(s) | 499 |
| AxyI | CCTNAGG | 3 cut(s) | 127, 1059, 2142 |
| BaeGI | GKGCMC | 2 cut(s) | 585, 2008 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1592, 1625 |
| BanI | GGYRCC | 1 cut(s) | 1608 |
| BanII | GRGCYC | 1 cut(s) | 494 |
| BauI | CACGAG | 1 cut(s) | 2001 |
| BbsI | GAAGAC | 3 cut(s) | 177, 900, 934 |
| Bbv12I | GWGCWC | 4 cut(s) | 494, 1158, 2008, 2190 |
| BbvI | GCAGC | 3 cut(s) | 235, 238, 1585 |
| BccI | CCATC | 5 cut(s) | 202, 308, 410, 538, 1610 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1145, 1179 |
| BciT130I | CCWGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| BclI | TGATCA | 3 cut(s) | 1039, 1068, 1492 |
| BcoDI | GTCTC | 1 cut(s) | 458 |
| BfaI | CTAG | 5 cut(s) | 224, 234, 330, 804, 1173 |
| BfmI | CTRYAG | 1 cut(s) | 1633 |
| BglII | AGATCT | 1 cut(s) | 955 |
| BisI | GCNGC | 3 cut(s) | 249, 252, 1574 |
| BlsI | GCNGC | 3 cut(s) | 250, 253, 1575 |
| BmcAI | AGTACT | 1 cut(s) | 1293 |
| Bme1390I | CCNGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| BmeT110I | CYCGRG | 1 cut(s) | 499 |
| BmiI | GGNNCC | 2 cut(s) | 1610, 2238 |
| BmrFI | CCNGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| BpiI | GAAGAC | 3 cut(s) | 177, 900, 934 |
| BpmI | CTGGAG | 3 cut(s) | 482, 801, 2223 |
| BpuEI | CTTGAG | 3 cut(s) | 107, 577, 2237 |
| Bsa29I | ATCGAT | 1 cut(s) | 1165 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1624, 1898 |
| BsaI | GGTCTC | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 4 cut(s) | 514, 906, 1228, 1711 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 32, 389, 656, 722, 1635, 1717, 2173 |
| Bse1I | ACTGG | 2 cut(s) | 761, 1526 |
| Bse21I | CCTNAGG | 3 cut(s) | 127, 1059, 2142 |
| Bse3DI | GCAATG | 2 cut(s) | 853, 1089 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1624, 1898 |
| BseBI | CCWGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| BseCI | ATCGAT | 1 cut(s) | 1165 |
| BseDI | CCNNGG | 4 cut(s) | 514, 906, 1228, 1711 |
| BseJI | GATNNNNATC | 2 cut(s) | 1624, 1898 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 32, 389, 656, 722, 1635, 1717, 2173 |
| BseMI | GCAATG | 2 cut(s) | 853, 1089 |
| BseMII | CTCAG | 8 cut(s) | 32, 141, 309, 351, 441, 1395, 2043, 2133 |
| BseNI | ACTGG | 2 cut(s) | 761, 1526 |
| BseRI | GAGGAG | 2 cut(s) | 106, 1363 |
| BseSI | GKGCMC | 2 cut(s) | 585, 2008 |
| BseXI | GCAGC | 3 cut(s) | 235, 238, 1585 |
| Bsh1236I | CGCG | 1 cut(s) | 899 |
| BshNI | GGYRCC | 1 cut(s) | 1608 |
| BshVI | ATCGAT | 1 cut(s) | 1165 |
| BsiHKAI | GWGCWC | 4 cut(s) | 494, 1158, 2008, 2190 |
| BsiHKCI | CYCGRG | 1 cut(s) | 499 |
| BslFI | GGGAC | 1 cut(s) | 331 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 32, 389, 656, 722, 1635, 1717, 2173 |
| BsmAI | GTCTC | 1 cut(s) | 458 |
| BsmFI | GGGAC | 1 cut(s) | 331 |
| Bso31I | GGTCTC | 1 cut(s) | 458 |
| BsoBI | CYCGRG | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 5 cut(s) | 494, 585, 1158, 2008, 2190 |
| Bsp1407I | TGTACA | 4 cut(s) | 505, 571, 747, 1362 |
| Bsp19I | CCATGG | 2 cut(s) | 906, 1711 |
| BspACI | CCGC | 3 cut(s) | 1774, 1789, 2032 |
| BspCNI | CTCAG | 8 cut(s) | 31, 140, 308, 350, 442, 1394, 2044, 2134 |
| BspDI | ATCGAT | 1 cut(s) | 1165 |
| BspFNI | CGCG | 1 cut(s) | 899 |
| BspHI | TCATGA | 2 cut(s) | 1198, 1972 |
| BspLI | GGNNCC | 2 cut(s) | 1610, 2238 |
| BspPI | GGATC | 2 cut(s) | 1170, 1203 |
| BspT107I | GGYRCC | 1 cut(s) | 1608 |
| BspTNI | GGTCTC | 1 cut(s) | 458 |
| BsrDI | GCAATG | 2 cut(s) | 853, 1089 |
| BsrGI | TGTACA | 4 cut(s) | 505, 571, 747, 1362 |
| BsrI | ACTGG | 2 cut(s) | 761, 1526 |
| BssECI | CCNNGG | 4 cut(s) | 514, 906, 1228, 1711 |
| BssSI | CACGAG | 1 cut(s) | 2001 |
| BssT1I | CCWWGG | 2 cut(s) | 906, 1711 |
| Bst2BI | CACGAG | 1 cut(s) | 2001 |
| Bst2UI | CCWGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| Bst4CI | ACNGT | 5 cut(s) | 158, 1367, 1605, 1682, 2185 |
| Bst6I | CTCTTC | 4 cut(s) | 339, 833, 1185, 1405 |
| BstAUI | TGTACA | 4 cut(s) | 505, 571, 747, 1362 |
| BstC8I | GCNNGC | 3 cut(s) | 651, 1087, 2179 |
| BstDSI | CCRYGG | 2 cut(s) | 906, 1711 |
| BstEII | GGTNACC | 1 cut(s) | 1232 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 387, 1633 |
| BstFNI | CGCG | 1 cut(s) | 899 |
| BstMAI | GTCTC | 1 cut(s) | 458 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 542, 911, 1091, 1120 |
| BstNI | CCWGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| BstNSI | RCATGY | 1 cut(s) | 2181 |
| BstPI | GGTNACC | 1 cut(s) | 1232 |
| BstSCI | CCNGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| BstSFI | CTRYAG | 1 cut(s) | 1633 |
| BstSLI | GKGCMC | 2 cut(s) | 585, 2008 |
| BstUI | CGCG | 1 cut(s) | 899 |
| BstV1I | GCAGC | 3 cut(s) | 235, 238, 1585 |
| BstV2I | GAAGAC | 3 cut(s) | 177, 900, 934 |
| BstX2I | RGATCY | 1 cut(s) | 955 |
| BstYI | RGATCY | 1 cut(s) | 955 |
| Bsu15I | ATCGAT | 1 cut(s) | 1165 |
| Bsu36I | CCTNAGG | 3 cut(s) | 127, 1059, 2142 |
| BsuTUI | ATCGAT | 1 cut(s) | 1165 |
| BtgI | CCRYGG | 2 cut(s) | 906, 1711 |
| BtsI | GCAGTG | 1 cut(s) | 2114 |
| BtsIMutI | CAGTG | 5 cut(s) | 754, 1372, 1610, 2049, 2114 |
| Cac8I | GCNNGC | 3 cut(s) | 651, 1087, 2179 |
| CciI | TCATGA | 2 cut(s) | 1198, 1972 |
| ClaI | ATCGAT | 1 cut(s) | 1165 |
| CseI | GACGC | 3 cut(s) | 229, 905, 980 |
| CsiI | ACCWGGT | 1 cut(s) | 1276 |
| Csp6I | GTAC | 7 cut(s) | 506, 572, 748, 1292, 1363, 1609, 1763 |
| CviQI | GTAC | 7 cut(s) | 506, 572, 748, 1292, 1363, 1609, 1763 |
| DraI | TTTAAA | 1 cut(s) | 1533 |
| DraIII | CACNNNGTG | 1 cut(s) | 1100 |
| Eam1104I | CTCTTC | 4 cut(s) | 339, 833, 1185, 1405 |
| EarI | CTCTTC | 4 cut(s) | 339, 833, 1185, 1405 |
| EciI | GGCGGA | 1 cut(s) | 1763 |
| Ecl136II | GAGCTC | 1 cut(s) | 492 |
| Eco130I | CCWWGG | 2 cut(s) | 906, 1711 |
| Eco24I | GRGCYC | 1 cut(s) | 494 |
| Eco31I | GGTCTC | 1 cut(s) | 458 |
| Eco53kI | GAGCTC | 1 cut(s) | 492 |
| Eco57I | CTGAAG | 5 cut(s) | 189, 755, 928, 1116, 1209 |
| Eco81I | CCTNAGG | 3 cut(s) | 127, 1059, 2142 |
| Eco88I | CYCGRG | 1 cut(s) | 499 |
| Eco91I | GGTNACC | 1 cut(s) | 1232 |
| EcoICRI | GAGCTC | 1 cut(s) | 492 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 387, 1633 |
| EcoO65I | GGTNACC | 1 cut(s) | 1232 |
| EcoRI | GAATTC | 1 cut(s) | 2091 |
| EcoRII | CCWGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| EcoT14I | CCWWGG | 2 cut(s) | 906, 1711 |
| EcoT22I | ATGCAT | 3 cut(s) | 916, 927, 1627 |
| EcoT38I | GRGCYC | 1 cut(s) | 494 |
| ErhI | CCWWGG | 2 cut(s) | 906, 1711 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1304, 1336, 1734, 1766, 1749, 1781 |
| FaqI | GGGAC | 1 cut(s) | 331 |
| FbaI | TGATCA | 3 cut(s) | 1039, 1068, 1492 |
| FblI | GTMKAC | 2 cut(s) | 1268, 1458 |
| Fnu4HI | GCNGC | 3 cut(s) | 249, 252, 1574 |
| FriOI | GRGCYC | 1 cut(s) | 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 249, 252, 1574 |
| FspBI | CTAG | 5 cut(s) | 224, 234, 330, 804, 1173 |
| GluI | GCNGC | 3 cut(s) | 249, 252, 1574 |
| GsuI | CTGGAG | 3 cut(s) | 482, 801, 2223 |
| HgaI | GACGC | 3 cut(s) | 229, 905, 980 |
| HincII | GTYRAC | 2 cut(s) | 591, 1459 |
| HindII | GTYRAC | 2 cut(s) | 591, 1459 |
| HpaI | GTTAAC | 1 cut(s) | 591 |
| HphI | GGTGA | 4 cut(s) | 1244, 1292, 1732, 2266 |
| Hpy166II | GTNNAC | 7 cut(s) | 506, 574, 591, 1269, 1341, 1459, 2006 |
| Hpy8I | GTNNAC | 7 cut(s) | 506, 574, 591, 1269, 1341, 1459, 2006 |
| Hpy99I | CGWCG | 1 cut(s) | 84 |
| HpyAV | CCTTC | 9 cut(s) | 275, 356, 1140, 1639, 1711, 1843, 1969, 2018, 2219 |
| HpyCH4III | ACNGT | 5 cut(s) | 158, 1367, 1605, 1682, 2185 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 542, 911, 1091, 1120 |
| KpnI | GGTACC | 1 cut(s) | 1612 |
| Ksp22I | TGATCA | 3 cut(s) | 1039, 1068, 1492 |
| KspAI | GTTAAC | 1 cut(s) | 591 |
| LmnI | GCTCC | 3 cut(s) | 1153, 1350, 2242 |
| Lsp1109I | GCAGC | 3 cut(s) | 235, 238, 1585 |
| MabI | ACCWGGT | 1 cut(s) | 1276 |
| MaeI | CTAG | 5 cut(s) | 224, 234, 330, 804, 1173 |
| MaeIII | GTNAC | 5 cut(s) | 290, 332, 1232, 1280, 2254 |
| MfeI | CAATTG | 2 cut(s) | 1080, 1550 |
| MflI | RGATCY | 1 cut(s) | 955 |
| MhlI | GDGCHC | 5 cut(s) | 494, 585, 1158, 2008, 2190 |
| MlyI | GAGTC | 3 cut(s) | 287, 329, 491 |
| MmeI | TCCRAC | 1 cut(s) | 741 |
| Mph1103I | ATGCAT | 3 cut(s) | 916, 927, 1627 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1853, 1920 |
| MseI | TTAA | 8 cut(s) | 215, 287, 590, 1107, 1146, 1532, 2102, 2151 |
| MslI | CAYNNNNRTG | 5 cut(s) | 550, 1203, 1500, 1818, 1977 |
| MspA1I | CMGCKG | 1 cut(s) | 1789 |
| MspR9I | CCNGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| MunI | CAATTG | 2 cut(s) | 1080, 1550 |
| MvaI | CCWGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| MvnI | CGCG | 1 cut(s) | 899 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 542, 911, 1091, 1120 |
| NcoI | CCATGG | 2 cut(s) | 906, 1711 |
| NlaIV | GGNNCC | 2 cut(s) | 1610, 2238 |
| NmuCI | GTSAC | 5 cut(s) | 290, 332, 1232, 1280, 2254 |
| NsiI | ATGCAT | 3 cut(s) | 916, 927, 1627 |
| NspI | RCATGY | 1 cut(s) | 2181 |
| PaeI | GCATGC | 1 cut(s) | 2181 |
| PagI | TCATGA | 2 cut(s) | 1198, 1972 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1853, 1920 |
| PfeI | GAWTC | 7 cut(s) | 149, 323, 519, 934, 1802, 1871, 2083 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 32, 2173 |
| PkrI | GCNGC | 3 cut(s) | 250, 253, 1575 |
| PleI | GAGTC | 3 cut(s) | 287, 329, 491 |
| PpsI | GAGTC | 3 cut(s) | 287, 329, 491 |
| PsiI | TTATAA | 2 cut(s) | 186, 1508 |
| Psp124BI | GAGCTC | 1 cut(s) | 494 |
| Psp6I | CCWGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| PspEI | GGTNACC | 1 cut(s) | 1232 |
| PspGI | CCWGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| PspN4I | GGNNCC | 2 cut(s) | 1610, 2238 |
| PsuI | RGATCY | 1 cut(s) | 955 |
| RsaI | GTAC | 7 cut(s) | 507, 573, 749, 1293, 1364, 1610, 1764 |
| RsaNI | GTAC | 7 cut(s) | 506, 572, 748, 1292, 1363, 1609, 1763 |
| RseI | CAYNNNNRTG | 5 cut(s) | 550, 1203, 1500, 1818, 1977 |
| SacI | GAGCTC | 1 cut(s) | 494 |
| SalI | GTCGAC | 1 cut(s) | 1457 |
| SaqAI | TTAA | 8 cut(s) | 215, 287, 590, 1107, 1146, 1532, 2102, 2151 |
| SatI | GCNGC | 3 cut(s) | 249, 252, 1574 |
| ScaI | AGTACT | 1 cut(s) | 1293 |
| SchI | GAGTC | 3 cut(s) | 287, 329, 491 |
| ScrFI | CCNGG | 6 cut(s) | 485, 515, 1230, 1238, 1278, 1613 |
| SduI | GDGCHC | 5 cut(s) | 494, 585, 1158, 2008, 2190 |
| SexAI | ACCWGGT | 1 cut(s) | 1276 |
| SfcI | CTRYAG | 1 cut(s) | 1633 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 550, 1203, 1500, 1818, 1977 |
| SmlI | CTYRAG | 3 cut(s) | 86, 556, 2216 |
| SmoI | CTYRAG | 3 cut(s) | 86, 556, 2216 |
| SphI | GCATGC | 1 cut(s) | 2181 |
| SsiI | CCGC | 3 cut(s) | 1774, 1789, 2032 |
| SspI | AATATT | 1 cut(s) | 1838 |
| SspMI | CTAG | 5 cut(s) | 224, 234, 330, 804, 1173 |
| SstI | GAGCTC | 1 cut(s) | 494 |
| StyD4I | CCNGG | 6 cut(s) | 483, 513, 1228, 1236, 1276, 1611 |
| StyI | CCWWGG | 2 cut(s) | 906, 1711 |
| TaaI | ACNGT | 5 cut(s) | 158, 1367, 1605, 1682, 2185 |
| TaqI | TCGA | 3 cut(s) | 1165, 1458, 1924 |
| TatI | WGTACW | 6 cut(s) | 505, 571, 747, 1291, 1362, 1762 |
| TfiI | GAWTC | 7 cut(s) | 149, 323, 519, 934, 1802, 1871, 2083 |
| Tru1I | TTAA | 8 cut(s) | 215, 287, 590, 1107, 1146, 1532, 2102, 2151 |
| Tru9I | TTAA | 8 cut(s) | 215, 287, 590, 1107, 1146, 1532, 2102, 2151 |
| TscAI | CASTG | 5 cut(s) | 761, 1372, 1610, 2056, 2121 |
| TseFI | GTSAC | 5 cut(s) | 290, 332, 1232, 1280, 2254 |
| TseI | GCWGC | 3 cut(s) | 248, 251, 1573 |
| Tsp45I | GTSAC | 5 cut(s) | 290, 332, 1232, 1280, 2254 |
| TspGWI | ACGGA | 3 cut(s) | 317, 1260, 1593 |
| TspRI | CASTG | 5 cut(s) | 761, 1372, 1610, 2056, 2121 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 32, 2173 |
| VneI | GTGCAC | 1 cut(s) | 2004 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 387, 1633 |
| XapI | RAATTY | 7 cut(s) | 377, 1014, 1221, 1933, 2091, 2098, 2132 |
| XbaI | TCTAGA | 2 cut(s) | 803, 1172 |
| XceI | RCATGY | 1 cut(s) | 2181 |
| XmiI | GTMKAC | 2 cut(s) | 1268, 1458 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1853, 1920 |
| XspI | CTAG | 5 cut(s) | 224, 234, 330, 804, 1173 |
| ZrmI | AGTACT | 1 cut(s) | 1293 |
| Zsp2I | ATGCAT | 3 cut(s) | 916, 927, 1627 |