Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Reverse (-)

7398304 .. 7402395

Gene Structure 4092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1068200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGTGCAATGGATCAGAGCAGATAAAACCCAATTCTTCTCCAGCAGCATCTCTTATATCTGTTGACGAAAGTAGACTTTCCAATACAGCCATGAATCACTTGACAGTTGAAACTGAAGATGCTTTTGCCAGCTTACTTGAGCTTGCTGCAAACAATGACATTCAGAGCTTCAAACGATCGATTGAGCATGACCCTTCTGGCATTGATGAGATTAGTTTGTGGTATTGTCGTCAGAAGGGCTCAAAACAGATGGTTAATGAGCAGAGAACCCCTTTAATGGTTGCTGCTACATATGGTAGCATTGATGTCATGCAGCTAATTCTCTCTCTCTCTGATGCTGATGTGAACCAGGCCTGTGGGCGTGATAGGAGCACTGCTCTTCACTGTGCCGCCTCAGGTGGGGCTGAGAATGCCGTGGATTGTGTGAAGCTGCTTTTAGGAGCTGGTGCTGATCCTAATTCGGTTGATGCTAATGGTCATCATCCTAATGATGTTATAGTTGTTCCTCCTAGGCTACAAAATGTCAAATTAGCTCTAGAAGAACTACTTATGGTAAATGGTTCTGTTGGTGAACAAACTCTCACAGTGTCAACAAGAACTGTACATTCAAGTTCTCCTCCACTGTCAGCTTCCCCAGAAAATGGGTCTCCATCCGCTTTTGATTTTAATTGTTCCCCTACAAAGTCAAAGTTCTATAATTCTCTCTCTTCGGCATCAGAGAAGAAGGAATATCCTGTTGATCCCTCTCTTCCAGACATCAAGAACAGCATTTATTCAACTGATGAGTTCCGAATGTATTCATTCAAGGTGAGGCCTTGTTCACGTGCATACTCTCACGATTGGACTGAGTGCCCGTTTGTCCATCCAGGGGAAAATGCACGAAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTTCCTTGTCCTGATTTCAGAAAGGGGGCTTGCAGACGTGGAGATATGTGTGAGTATGCTCATGGGGTTTTTGAGTGCTGGCTACACCCAGCTCAGTATCGAACCCGACTTTGCAAGGATGGTATAAGCTGTGCAAGGAGAGTCTGCTTTTTTGCTCACACCACGGATGAACTCAGGCCATTATACGTTTCAACTGGTTCTGCTGTTCCTTCTCCTCGCTCGAGCACCTCTGGTGCTTTGGCCATGGATTTTGCTGCTGCAATGAGCCTCTTGCCTGGTTCTCCGTCATCGGTCAATGTCATGTCTCCTTCACCATTTACTCCACCCATGTCTCCATCTGCCAATGGCATGTCACACTCATCTCTGGCTTGGCCCCAACCTAATGTCCCGGCCTTGCATCTGCCAGGTAGCAATTTTCAGTCTAGTCGGTTGAGATCTTCTCTTTGTGCAAGAGATATGCCATCGGATGATTTTGATTTACTGCCGGAGTTTGATATGCAGCAACAACAGCTACTAAATGAATTATCTTGCCTATCGCAACCATCTCTGAGTAATAATTCACTGAACCGTAGTGGTCGAAGGACAACCCTAACCCCCTCAAATCTTGATGATCTCTTCTCTGCAGAGAGCTTATCACCCCGGTACTCTGATCAATCATTGCAATCGGGTGTTTTCTCCCCAACTCACAAATCAGCTGTTCTCAATCAATTTCAGCAGCAGCAGAGCATGCTTTCACCAATCCATACAAACTTTTCCCCAAAAGCTGTTGATCACGCTCTATTGCAGGCCTCTTACGGGGGCCCATCCTCTGGGAGGATGTCTCCACGGAATGTGGAACCTATCTCACCAATGGGCTCTCGAGTTTCAATGCTAGCTCAACGAGAGAAGCAACAACAGTTCCGTAGCCTTAGTTCACGGGAACTCGGCTCCAACTCTGCTTCCATCGTTGGTTCCTCTCCAAATTCTTGGTCAAAATGGGGATCCTCCAATGGAAAACCAGATTGGGCAGTTACTACAGATGAATTAGGTAAGCTCCGCAGATCATCTTCTTTTGAGCTTGGGAACAATGAAGAGGAGCCAGATCTTTCCTGGGTTCAGTCACTTGTTAAAGAATCTCCTACCGAAATCAAAGAGAAGCAAACACCAAGCTCAGGTGTTACGGCCGCTGGTTCCTCCAACGAAGGTTCAAATGCAAACTCCCAAAGGGAGTCTGTCGATCATGCTGTGTTAGGAGCATGGATTGACCAAATGCATCTGGATCTTGTGGCTCAGCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 zf-CCCH

Protein Analysis

732

Amino Acids

79.55

Weight (kDa)

5.91

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	82 - 156	3.9e-11	Ankyrin repeats (3 copies)
Ank	PF00023	124 - 156	1.2e-06	Ankyrin repeat
zf-CCCH_AtC3H23	PF25512	262 - 295	6e-21	AtC3H23-like, CCCH zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	641, 1724
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	4 cut(s)	390, 654, 1951, 2079
AclWI	GGATC	6 cut(s)	19, 446, 734, 1890, 1903, 2181
AcoI	YGGCCR	2 cut(s)	1155, 2076
AcsI	RAATTY	1 cut(s)	1876
AcuI	CTGAAG	1 cut(s)	135
AcvI	CACGTG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	603, 1559
AfiI	CCNNNNNNNGG	8 cut(s)	277, 399, 641, 868, 1710, 1724, 1728, 2066
AgsI	TTSAA	8 cut(s)	110, 172, 609, 777, 805, 1107, 1782, 2103
AjiI	CACGTC	1 cut(s)	953
AjnI	CCWGG	5 cut(s)	348, 865, 1189, 1318, 2003
AjuI	GAANNNNNNNTTGG	2 cut(s)	1900, 1932
Alw21I	GWGCWC	2 cut(s)	374, 1142
Alw26I	GTCTC	4 cut(s)	651, 1224, 1251, 1740
AlwI	GGATC	6 cut(s)	19, 446, 734, 1890, 1903, 2181
Ama87I	CYCGRG	2 cut(s)	1135, 1773
AoxI	GGCC	9 cut(s)	351, 812, 1091, 1155, 1286, 1305, 1701, 1714, 2076
ApaI	GGGCCC	1 cut(s)	1718
ApoI	RAATTY	1 cut(s)	1876
ArsI	GACNNNNNNTTYG	2 cut(s)	1868, 1900
Asp700I	GAANNNNTTC	1 cut(s)	796
AspA2I	CCTAGG	1 cut(s)	509
AspS9I	GGNCC	4 cut(s)	889, 1287, 1714, 1715
AsuC2I	CCSGG	2 cut(s)	1304, 1555
AsuHPI	GGTGA	6 cut(s)	581, 820, 1218, 1542, 1641, 1752
AsuNHI	GCTAGC	1 cut(s)	1786
AvaI	CYCGRG	2 cut(s)	1135, 1773
AvaII	GGWCC	1 cut(s)	889
AvrII	CCTAGG	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	394
BaeGI	GKGCMC	2 cut(s)	854, 1718
BalI	TGGCCA	1 cut(s)	1157
BamHI	GGATCC	1 cut(s)	1895
BanII	GRGCYC	3 cut(s)	242, 1718, 1772
BbrPI	CACGTG	1 cut(s)	824
Bbv12I	GWGCWC	2 cut(s)	374, 1142
BccI	CCATC	9 cut(s)	244, 658, 870, 1028, 1258, 1384, 1465, 1726, 1865
BceAI	ACGGC	2 cut(s)	398, 2091
BciT130I	CCWGG	5 cut(s)	350, 867, 1191, 1320, 2005
BclI	TGATCA	2 cut(s)	1564, 1684
BcnI	CCSGG	2 cut(s)	1304, 1555
BcoDI	GTCTC	4 cut(s)	651, 1224, 1251, 1740
BfaI	CTAG	4 cut(s)	510, 536, 1338, 1787
BfmI	CTRYAG	2 cut(s)	1536, 1929
BglII	AGATCT	2 cut(s)	1349, 1996
BlnI	CCTAGG	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	2184
Bme1390I	CCNGG	7 cut(s)	350, 867, 1191, 1304, 1320, 1555, 2005
Bme18I	GGWCC	1 cut(s)	889
BmeT110I	CYCGRG	2 cut(s)	1135, 1773
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	4 cut(s)	889, 1287, 1714, 1715
BmrFI	CCNGG	7 cut(s)	350, 867, 1191, 1304, 1320, 1555, 2005
BmsI	GCATC	7 cut(s)	56, 109, 325, 457, 722, 1321, 2176
BmtI	GCTAGC	1 cut(s)	1790
BplI	GAGNNNNNCTC	6 cut(s)	361, 393, 1339, 1371, 1720, 1752
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	2065
Bpu1102I	GCTNAGC	1 cut(s)	2184
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	1304, 1555
Bsa29I	ATCGAT	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	824
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	9 cut(s)	414, 509, 866, 893, 1077, 1158, 1553, 1739, 2004
Bsc4I	CCNNNNNNNGG	8 cut(s)	277, 399, 641, 868, 1710, 1724, 1728, 2066
Bse1I	ACTGG	1 cut(s)	1114
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	3 cut(s)	13, 1182, 1571
BseBI	CCWGG	5 cut(s)	350, 867, 1191, 1320, 2005
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	9 cut(s)	414, 509, 866, 893, 1077, 1158, 1553, 1739, 2004
BseGI	GGATG	8 cut(s)	481, 650, 862, 1039, 1087, 1387, 1718, 1737
BseLI	CCNNNNNNNGG	8 cut(s)	277, 399, 641, 868, 1710, 1724, 1728, 2066
BseMI	GCAATG	3 cut(s)	13, 1182, 1571
BseMII	CTCAG	7 cut(s)	396, 408, 837, 1022, 1102, 1454, 2079
BseNI	ACTGG	1 cut(s)	1114
BseRI	GAGGAG	3 cut(s)	606, 1119, 2003
BseSI	GKGCMC	2 cut(s)	854, 1718
BseX3I	CGGCCG	1 cut(s)	2076
BseYI	CCCAGC	1 cut(s)	1003
Bsh1285I	CGRYCG	2 cut(s)	179, 2079
BshFI	GGCC	9 cut(s)	353, 814, 1093, 1157, 1288, 1307, 1703, 1716, 2078
BshVI	ATCGAT	1 cut(s)	179
BsiEI	CGRYCG	2 cut(s)	179, 2079
BsiHKAI	GWGCWC	2 cut(s)	374, 1142
BsiHKCI	CYCGRG	2 cut(s)	1135, 1773
BsiSI	CCGG	3 cut(s)	1304, 1400, 1555
BslFI	GGGAC	2 cut(s)	902, 1286
BslI	CCNNNNNNNGG	8 cut(s)	277, 399, 641, 868, 1710, 1724, 1728, 2066
BsmAI	GTCTC	4 cut(s)	651, 1224, 1251, 1740
BsmFI	GGGAC	2 cut(s)	902, 1286
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	9 cut(s)	353, 814, 1093, 1157, 1288, 1307, 1703, 1716, 2078
Bso31I	GGTCTC	1 cut(s)	651
BsoBI	CYCGRG	2 cut(s)	1135, 1773
Bsp120I	GGGCCC	1 cut(s)	1714
Bsp1286I	GDGCHC	6 cut(s)	242, 374, 854, 1142, 1718, 1772
Bsp1407I	TGTACA	1 cut(s)	601
Bsp1720I	GCTNAGC	1 cut(s)	2184
Bsp19I	CCATGG	1 cut(s)	1158
BspACI	CCGC	4 cut(s)	390, 654, 1951, 2079
BspANI	GGCC	9 cut(s)	353, 814, 1093, 1157, 1288, 1307, 1703, 1716, 2078
BspCNI	CTCAG	7 cut(s)	397, 407, 838, 1021, 1101, 1455, 2078
BspDI	ATCGAT	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	1540
BspOI	GCTAGC	1 cut(s)	1790
BspPI	GGATC	6 cut(s)	19, 446, 734, 1890, 1903, 2181
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	651
BsrDI	GCAATG	3 cut(s)	13, 1182, 1571
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	1114
BssECI	CCNNGG	9 cut(s)	414, 509, 866, 893, 1077, 1158, 1553, 1739, 2004
BssT1I	CCWWGG	3 cut(s)	509, 893, 1158
Bst2UI	CCWGG	5 cut(s)	350, 867, 1191, 1320, 2005
Bst4CI	ACNGT	7 cut(s)	106, 386, 586, 601, 624, 1484, 1812
Bst6I	CTCTTC	5 cut(s)	384, 712, 753, 1535, 1980
BstAPI	GCANNNNNTGC	1 cut(s)	1642
BstAUI	TGTACA	1 cut(s)	601
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	7 cut(s)	130, 144, 946, 995, 1643, 1701, 1788
BstDEI	CTNAG	9 cut(s)	394, 405, 846, 1008, 1088, 1463, 1823, 2065, 2184
BstDSI	CCRYGG	4 cut(s)	414, 1077, 1158, 1739
BstENI	CCTNNNNNAGG	1 cut(s)	1726
BstF5I	GGATG	8 cut(s)	481, 650, 862, 1039, 1087, 1387, 1718, 1737
BstMAI	GTCTC	4 cut(s)	651, 1224, 1251, 1740
BstMCI	CGRYCG	2 cut(s)	179, 2079
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 1423, 1642
BstNI	CCWGG	5 cut(s)	350, 867, 1191, 1320, 2005
BstNSI	RCATGY	2 cut(s)	1267, 1645
BstSCI	CCNGG	7 cut(s)	348, 865, 1189, 1302, 1318, 1553, 2003
BstSFI	CTRYAG	2 cut(s)	1536, 1929
BstSLI	GKGCMC	2 cut(s)	854, 1718
BstX2I	RGATCY	4 cut(s)	1349, 1895, 1996, 2173
BstXI	CCANNNNNNTGG	2 cut(s)	356, 1881
BstYI	RGATCY	4 cut(s)	1349, 1895, 1996, 2173
BstZI	CGGCCG	1 cut(s)	2076
Bsu15I	ATCGAT	1 cut(s)	179
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	9 cut(s)	353, 814, 1093, 1157, 1288, 1307, 1703, 1716, 2078
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	4 cut(s)	414, 1077, 1158, 1739
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	8 cut(s)	481, 650, 862, 1039, 1087, 1387, 1718, 1737
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	5 cut(s)	372, 382, 591, 620, 1475
Cac8I	GCNNGC	7 cut(s)	130, 144, 946, 995, 1643, 1701, 1788
Cfr13I	GGNCC	4 cut(s)	889, 1287, 1714, 1715
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	602, 1558
CviQI	GTAC	2 cut(s)	602, 1558
DdeI	CTNAG	9 cut(s)	394, 405, 846, 1008, 1088, 1463, 1823, 2065, 2184
EaeI	YGGCCR	2 cut(s)	1155, 2076
EagI	CGGCCG	1 cut(s)	2076
Eam1104I	CTCTTC	5 cut(s)	384, 712, 753, 1535, 1980
EarI	CTCTTC	5 cut(s)	384, 712, 753, 1535, 1980
EclXI	CGGCCG	1 cut(s)	2076
Eco130I	CCWWGG	3 cut(s)	509, 893, 1158
Eco147I	AGGCCT	3 cut(s)	353, 814, 1703
Eco24I	GRGCYC	3 cut(s)	242, 1718, 1772
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	889
Eco52I	CGGCCG	1 cut(s)	2076
Eco57I	CTGAAG	1 cut(s)	135
Eco72I	CACGTG	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	394
Eco88I	CYCGRG	2 cut(s)	1135, 1773
EcoNI	CCTNNNNNAGG	1 cut(s)	1726
EcoO109I	RGGNCCY	2 cut(s)	889, 1714
EcoRII	CCWGG	5 cut(s)	348, 865, 1189, 1318, 2003
EcoT14I	CCWWGG	3 cut(s)	509, 893, 1158
EcoT22I	ATGCAT	1 cut(s)	2169
EcoT38I	GRGCYC	3 cut(s)	242, 1718, 1772
ErhI	CCWWGG	3 cut(s)	509, 893, 1158
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	902, 1286
FauNDI	CATATG	1 cut(s)	292
FbaI	TGATCA	2 cut(s)	1564, 1684
FblI	GTMKAC	1 cut(s)	73
FokI	GGATG	8 cut(s)	468, 637, 849, 1046, 1094, 1394, 1705, 1744
FriOI	GRGCYC	3 cut(s)	242, 1718, 1772
FspBI	CTAG	4 cut(s)	510, 536, 1338, 1787
GsaI	CCCAGC	1 cut(s)	1007
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	9 cut(s)	353, 814, 1093, 1157, 1288, 1307, 1703, 1716, 2078
HapII	CCGG	3 cut(s)	1304, 1400, 1555
HincII	GTYRAC	2 cut(s)	64, 591
HindII	GTYRAC	2 cut(s)	64, 591
HinfI	GANTC	4 cut(s)	94, 1056, 2027, 2123
HpaII	CCGG	3 cut(s)	1304, 1400, 1555
HphI	GGTGA	6 cut(s)	581, 820, 1218, 1542, 1641, 1752
Hpy166II	GTNNAC	7 cut(s)	64, 74, 346, 572, 591, 821, 1829
Hpy188III	TCNNGA	8 cut(s)	536, 752, 760, 836, 926, 1520, 1773, 2171
Hpy8I	GTNNAC	7 cut(s)	64, 74, 346, 572, 591, 821, 1829
HpyAV	CCTTC	8 cut(s)	204, 229, 718, 879, 1134, 1233, 1488, 2090
HpyCH4III	ACNGT	7 cut(s)	106, 386, 586, 601, 624, 1484, 1812
HpyCH4IV	ACGT	3 cut(s)	823, 952, 1101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 1423, 1642
HpyF3I	CTNAG	9 cut(s)	394, 405, 846, 1008, 1088, 1463, 1823, 2065, 2184
HpySE526I	ACGT	3 cut(s)	823, 952, 1101
KflI	GGGWCCC	1 cut(s)	889
Ksp22I	TGATCA	2 cut(s)	1564, 1684
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	6 cut(s)	369, 440, 1847, 1953, 1990, 2147
LweI	GCATC	7 cut(s)	56, 109, 325, 457, 722, 1321, 2176
MaeI	CTAG	4 cut(s)	510, 536, 1338, 1787
MaeII	ACGT	3 cut(s)	823, 952, 1101
MaeIII	GTNAC	4 cut(s)	1266, 1924, 2013, 2071
MflI	RGATCY	4 cut(s)	1349, 1895, 1996, 2173
MhlI	GDGCHC	6 cut(s)	242, 374, 854, 1142, 1718, 1772
MlsI	TGGCCA	1 cut(s)	1157
MluNI	TGGCCA	1 cut(s)	1157
MlyI	GAGTC	2 cut(s)	1065, 2132
MmeI	TCCRAC	2 cut(s)	1869, 2115
Mox20I	TGGCCA	1 cut(s)	1157
Mph1103I	ATGCAT	1 cut(s)	2169
MroXI	GAANNNNTTC	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	4 cut(s)	255, 275, 666, 2022
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	1157
MspA1I	CMGCKG	2 cut(s)	1610, 2081
MspI	CCGG	3 cut(s)	1304, 1400, 1555
MspR9I	CCNGG	7 cut(s)	350, 867, 1191, 1304, 1320, 1555, 2005
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	5 cut(s)	350, 867, 1191, 1320, 2005
MwoI	GCNNNNNNNGC	3 cut(s)	410, 1423, 1642
NciI	CCSGG	2 cut(s)	1304, 1555
NcoI	CCATGG	1 cut(s)	1158
NdeI	CATATG	1 cut(s)	292
NheI	GCTAGC	1 cut(s)	1786
NmeAIII	GCCGAG	1 cut(s)	1818
NmuCI	GTSAC	2 cut(s)	1266, 2013
NsiI	ATGCAT	1 cut(s)	2169
NspI	RCATGY	2 cut(s)	1267, 1645
PaeI	GCATGC	1 cut(s)	1645
PaeR7I	CTCGAG	2 cut(s)	1135, 1773
PceI	AGGCCT	3 cut(s)	353, 814, 1703
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	94, 2027
PflMI	CCANNNNNTGG	2 cut(s)	641, 1724
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	2 cut(s)	1064, 2131
PmaCI	CACGTG	1 cut(s)	824
PmlI	CACGTG	1 cut(s)	824
PpsI	GAGTC	2 cut(s)	1064, 2131
Ppu21I	YACGTR	1 cut(s)	824
PpuMI	RGGWCCY	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	889
Psp6I	CCWGG	5 cut(s)	348, 865, 1189, 1318, 2003
PspCI	CACGTG	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	1003
PspGI	CCWGG	5 cut(s)	348, 865, 1189, 1318, 2003
PspOMI	GGGCCC	1 cut(s)	1714
PspPI	GGNCC	4 cut(s)	889, 1287, 1714, 1715
PspPPI	RGGWCCY	1 cut(s)	889
PspXI	VCTCGAGB	1 cut(s)	1135
PsrI	GAACNNNNNNTAC	2 cut(s)	1810, 1842
PstI	CTGCAG	1 cut(s)	1540
PsuI	RGATCY	4 cut(s)	1349, 1895, 1996, 2173
PvuI	CGATCG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	1610
RsaI	GTAC	2 cut(s)	603, 1559
RsaNI	GTAC	2 cut(s)	602, 1558
RseI	CAYNNNNRTG	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	255, 275, 666, 2022
Sau96I	GGNCC	4 cut(s)	889, 1287, 1714, 1715
SchI	GAGTC	2 cut(s)	1065, 2132
ScrFI	CCNGG	7 cut(s)	350, 867, 1191, 1304, 1320, 1555, 2005
SduI	GDGCHC	6 cut(s)	242, 374, 854, 1142, 1718, 1772
SfaNI	GCATC	7 cut(s)	56, 109, 325, 457, 722, 1321, 2176
SfcI	CTRYAG	2 cut(s)	1536, 1929
Sfr274I	CTCGAG	2 cut(s)	1135, 1773
SinI	GGWCC	1 cut(s)	889
SlaI	CTCGAG	2 cut(s)	1135, 1773
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	137, 1135, 1773
SmoI	CTYRAG	3 cut(s)	137, 1135, 1773
SphI	GCATGC	1 cut(s)	1645
SseBI	AGGCCT	3 cut(s)	353, 814, 1703
SsiI	CCGC	4 cut(s)	390, 654, 1951, 2079
SspMI	CTAG	4 cut(s)	510, 536, 1338, 1787
StuI	AGGCCT	3 cut(s)	353, 814, 1703
StyD4I	CCNGG	7 cut(s)	348, 865, 1189, 1302, 1318, 1553, 2003
StyI	CCWWGG	3 cut(s)	509, 893, 1158
TaaI	ACNGT	7 cut(s)	106, 386, 586, 601, 624, 1484, 1812
TaiI	ACGT	3 cut(s)	826, 955, 1104
TaqI	TCGA	6 cut(s)	179, 1015, 1136, 1492, 1774, 2130
TaqII	GACCGA	1 cut(s)	1195
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	2 cut(s)	392, 2081
TfiI	GAWTC	2 cut(s)	94, 2027
Tru1I	TTAA	4 cut(s)	255, 275, 666, 2022
Tru9I	TTAA	4 cut(s)	255, 275, 666, 2022
TscAI	CASTG	5 cut(s)	379, 389, 591, 627, 1482
TseFI	GTSAC	2 cut(s)	1266, 2013
Tsp45I	GTSAC	2 cut(s)	1266, 2013
TspDTI	ATGAA	7 cut(s)	107, 789, 893, 1098, 1449, 1950, 1998
TspGWI	ACGGA	4 cut(s)	1094, 1188, 1756, 1805
TspRI	CASTG	5 cut(s)	379, 389, 591, 627, 1482
Van91I	CCANNNNNTGG	2 cut(s)	641, 1724
VpaK11BI	GGWCC	1 cut(s)	889
XagI	CCTNNNNNAGG	1 cut(s)	1726
XapI	RAATTY	1 cut(s)	1876
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	2 cut(s)	1267, 1645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2001
XhoI	CTCGAG	2 cut(s)	1135, 1773
XmaJI	CCTAGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	4 cut(s)	510, 536, 1338, 1787
Zsp2I	ATGCAT	1 cut(s)	2169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.