Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Forward (+)

14227793 .. 14228835

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATTGGACTGAATGCCATTTTGTGCATCCTAGTGAGAATGCAAGGAGAAGAGACCCGAGAAAGTTCCAGTATAGTTGTATGCCATGCTTGGATTTTCGCAAGGGGACATGTAGACGTGGAGATTTATTATAAAACTCGACTCTGCAAAGATGGCATAAGTTGCTTGCGTCAGGTTTGCTTCTTTGCCCACAAACCTGAGGAAATGCGACCCTTGTTTGTTTCTACTGGATCTGCCATGCCATCCCCTCATTCAGCAACCTCTGCTGATGTTTTCATGGACATGGCTGCAACTTTGAACGTGCTGCCTGGCTCGACCAAAGCTGTACCGGCCATGTCACCTCCTTTTACTCCTCCCATGTCTCTTCGTAATGGTATTTTCGACTATTCCATGGCATGGCCTCAACAACATATCCCCAGTTTATATCTACCAGGCAGCAATATTCAAGCAAGTCGTCTGAGCTCTTCTTTTAATGCAAATGATGTTCCTACCGAGGAGGTTAACATGTTGCATAATTTTGAAATGCAACAACAGCAATCATTTCATGATGGGTTTTCCTTCTCACATTCATACATCAGTGCTTCCTCAATGAGTCATCTTCACCATCGAGAAACCTTGACACCTTCAAATCTCAATGATGTTTTCACTTCCCATCTCTCATCCCCTCGATTTGCTGACCAACTTGCAAACTCATCTGCTTTCTCACCCTCAAAAATATCTGTTGTTCGCAATCAACTCCACCAGCAACAATCAATGTTATCTCCTATCAGAACAAATGTGTTCTCTCCAAGGATGGTTGACCAGAATCTCTTGCAAGTTCCATTTGGTTTTTCCTCACTGAGGATGATGTCACCTCGAAGCATGAAGCCTCTTTCTCCAATAGGCACTAGGGTCTCTACTCTTGCTCAGCACGAGAAGCAGAAGCCGCTATACAGCCCTAACTCATGTGATGTTGGATCCAATGGTGTTGGTTCCCCTGTGCCTATGTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 zf-CCCH

Protein Analysis

332

Amino Acids

36.64

Weight (kDa)

8.54

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	1 cut(s)	926
AclWI	GGATC	3 cut(s)	238, 951, 964
AcoI	YGGCCR	1 cut(s)	330
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	396, 840
AflIII	ACRYGT	2 cut(s)	109, 504
AgsI	TTSAA	4 cut(s)	298, 446, 521, 627
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	307, 430
AluBI	AGCT	2 cut(s)	323, 462
AluI	AGCT	2 cut(s)	323, 462
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	3 cut(s)	47, 366, 898
AlwI	GGATC	3 cut(s)	238, 951, 964
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	330, 398
ApeKI	GCWGC	3 cut(s)	287, 304, 435
AsuHPI	GGTGA	4 cut(s)	330, 593, 696, 843
AvaI	CYCGRG	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BauI	CACGAG	1 cut(s)	911
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	274, 291, 447
BccI	CCATC	6 cut(s)	146, 250, 542, 612, 660, 787
BciT130I	CCWGG	2 cut(s)	309, 432
BcoDI	GTCTC	3 cut(s)	47, 366, 898
BfaI	CTAG	2 cut(s)	32, 888
BisI	GCNGC	4 cut(s)	288, 305, 436, 926
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	4 cut(s)	289, 306, 437, 927
Bme1390I	CCNGG	2 cut(s)	309, 432
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	958, 973
BmrFI	CCNGG	2 cut(s)	309, 432
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	906
BsaI	GGTCTC	2 cut(s)	47, 898
BsaJI	CCNNGG	3 cut(s)	390, 492, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 840
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	69, 232, 417
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	309, 432
BseDI	CCNNGG	3 cut(s)	390, 492, 788
BseGI	GGATG	5 cut(s)	27, 242, 659, 798, 849
BseLI	CCNNNNNNNGG	2 cut(s)	396, 840
BseMII	CTCAG	4 cut(s)	189, 449, 830, 920
BseNI	ACTGG	3 cut(s)	69, 232, 417
BseRI	GAGGAG	2 cut(s)	342, 509
BseXI	GCAGC	3 cut(s)	274, 291, 447
BshFI	GGCC	2 cut(s)	332, 400
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	396, 840
BsmAI	GTCTC	3 cut(s)	47, 366, 898
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	19, 45
BsnI	GGCC	2 cut(s)	332, 400
Bso31I	GGTCTC	2 cut(s)	47, 898
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	2 cut(s)	230, 956
Bsp1720I	GCTNAGC	1 cut(s)	906
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	926
BspANI	GGCC	2 cut(s)	332, 400
BspCNI	CTCAG	4 cut(s)	190, 450, 831, 919
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	958, 973
BspPI	GGATC	3 cut(s)	238, 951, 964
BspQI	GCTCTTC	1 cut(s)	469
BspTNI	GGTCTC	2 cut(s)	47, 898
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	69, 232, 417
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	390, 492, 788
BssMI	GATC	2 cut(s)	230, 956
BssSI	CACGAG	1 cut(s)	911
BssT1I	CCWWGG	2 cut(s)	390, 788
Bst2BI	CACGAG	1 cut(s)	911
Bst2UI	CCWGG	2 cut(s)	309, 432
Bst6I	CTCTTC	3 cut(s)	45, 369, 469
BstAPI	GCANNNNNTGC	2 cut(s)	162, 263
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	198, 458, 839, 906
BstDSI	CCRYGG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	838
BstF5I	GGATG	5 cut(s)	27, 242, 659, 798, 849
BstKTI	GATC	2 cut(s)	233, 959
BstMAI	GTCTC	3 cut(s)	47, 366, 898
BstMBI	GATC	2 cut(s)	230, 956
BstMWI	GCNNNNNNNGC	7 cut(s)	153, 162, 263, 329, 532, 916, 925
BstNI	CCWGG	2 cut(s)	309, 432
BstNSI	RCATGY	2 cut(s)	113, 508
BstSCI	CCNGG	2 cut(s)	307, 430
BstV1I	GCAGC	3 cut(s)	274, 291, 447
BstX2I	RGATCY	2 cut(s)	230, 956
BstYI	RGATCY	2 cut(s)	230, 956
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	332, 400
BtgI	CCRYGG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	5 cut(s)	27, 242, 659, 798, 849
BtsIMutI	CAGTG	2 cut(s)	583, 836
Cac8I	GCNNGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	328
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	326
CviJI	RGCY	9 cut(s)	287, 312, 323, 332, 400, 462, 868, 925, 936
CviKI_1	RGCY	9 cut(s)	287, 312, 323, 332, 400, 462, 868, 925, 936
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	4 cut(s)	198, 458, 839, 906
DpnI	GATC	2 cut(s)	232, 958
DpnII	GATC	2 cut(s)	230, 956
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	45, 369, 469
EarI	CTCTTC	3 cut(s)	45, 369, 469
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	390, 788
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	2 cut(s)	47, 898
Eco53kI	GAGCTC	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	307, 430
EcoT14I	CCWWGG	2 cut(s)	390, 788
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	2 cut(s)	390, 788
FaqI	GGGAC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	288, 305, 436, 926
FokI	GGATG	5 cut(s)	14, 229, 646, 805, 856
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	288, 305, 436, 926
FspBI	CTAG	2 cut(s)	32, 888
GluI	GCNGC	4 cut(s)	288, 305, 436, 926
HaeIII	GGCC	2 cut(s)	332, 400
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	158
HincII	GTYRAC	2 cut(s)	502, 799
HindII	GTYRAC	2 cut(s)	502, 799
HinfI	GANTC	3 cut(s)	141, 592, 805
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	4 cut(s)	330, 593, 696, 843
Hpy166II	GTNNAC	3 cut(s)	115, 502, 799
Hpy188I	TCNGA	2 cut(s)	459, 770
Hpy188III	TCNNGA	2 cut(s)	545, 608
Hpy8I	GTNNAC	3 cut(s)	115, 502, 799
HpyAV	CCTTC	2 cut(s)	568, 633
HpyCH4IV	ACGT	2 cut(s)	117, 300
HpyCH4V	TGCA	9 cut(s)	27, 43, 147, 290, 476, 511, 526, 686, 814
HpyF10VI	GCNNNNNNNGC	7 cut(s)	153, 162, 263, 329, 532, 916, 925
HpyF3I	CTNAG	4 cut(s)	198, 458, 839, 906
HpySE526I	ACGT	2 cut(s)	117, 300
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	230, 956
LguI	GCTCTTC	1 cut(s)	469
Lsp1109I	GCAGC	3 cut(s)	274, 291, 447
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	32, 888
MaeII	ACGT	2 cut(s)	117, 300
MaeIII	GTNAC	2 cut(s)	336, 849
MalI	GATC	2 cut(s)	232, 958
MboI	GATC	2 cut(s)	230, 956
MboII	GAAGA	4 cut(s)	62, 356, 456, 590
MflI	RGATCY	2 cut(s)	230, 956
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	135, 601
MmeI	TCCRAC	1 cut(s)	934
MseI	TTAA	2 cut(s)	471, 501
MslI	CAYNNNNRTG	2 cut(s)	32, 281
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	309, 432
Mva1269I	GAATGC	2 cut(s)	19, 45
MvaI	CCWGG	2 cut(s)	309, 432
MwoI	GCNNNNNNNGC	7 cut(s)	153, 162, 263, 329, 532, 916, 925
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	2 cut(s)	230, 956
NlaIV	GGNNCC	2 cut(s)	958, 973
NmuCI	GTSAC	2 cut(s)	336, 849
NspI	RCATGY	2 cut(s)	113, 508
PagI	TCATGA	1 cut(s)	544
PciI	ACATGT	2 cut(s)	109, 504
PciSI	GCTCTTC	1 cut(s)	469
PctI	GAATGC	2 cut(s)	19, 45
PfeI	GAWTC	1 cut(s)	805
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	4 cut(s)	289, 306, 437, 927
PleI	GAGTC	2 cut(s)	135, 600
PpsI	GAGTC	2 cut(s)	135, 600
PscI	ACATGT	2 cut(s)	109, 504
PsiI	TTATAA	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	307, 430
PspGI	CCWGG	2 cut(s)	307, 430
PspN4I	GGNNCC	2 cut(s)	958, 973
PsuI	RGATCY	2 cut(s)	230, 956
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	2 cut(s)	32, 281
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	471, 501
SatI	GCNGC	4 cut(s)	288, 305, 436, 926
Sau3AI	GATC	2 cut(s)	230, 956
SchI	GAGTC	2 cut(s)	135, 601
ScrFI	CCNGG	2 cut(s)	309, 432
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	32, 281
Sse9I	AATT	1 cut(s)	514
SsiI	CCGC	1 cut(s)	926
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	32, 888
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	307, 430
StyI	CCWWGG	2 cut(s)	390, 788
TaiI	ACGT	2 cut(s)	120, 303
TaqI	TCGA	6 cut(s)	139, 314, 381, 607, 667, 856
TasI	AATT	1 cut(s)	514
TauI	GCSGC	1 cut(s)	928
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	2 cut(s)	471, 501
Tru9I	TTAA	2 cut(s)	471, 501
TscAI	CASTG	2 cut(s)	583, 843
TseFI	GTSAC	2 cut(s)	336, 849
TseI	GCWGC	3 cut(s)	287, 304, 435
Tsp45I	GTSAC	2 cut(s)	336, 849
TspDTI	ATGAA	4 cut(s)	265, 533, 558, 878
TspRI	CASTG	2 cut(s)	583, 843
Van91I	CCANNNNNTGG	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	838
XceI	RCATGY	2 cut(s)	113, 508
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	32, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.