Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Reverse (-)

16819793 .. 16820446

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCAGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCATCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACGGCCGCACAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGATCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTTAGGGTATCTTCGAAAATTCGGAGGAGTGGATTCTAGTGGTGTTAAAGATTTGGGAGGGGGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCAATTGAAGAGACGGTATTGTCGATTCAGTTGCTTGGGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 zf-CCCH

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

9.63

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	14 - 104	3.8e-15	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	625
AatII	GACGTC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 466
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	253, 599
AcoI	YGGCCR	2 cut(s)	103, 189
AcsI	RAATTY	4 cut(s)	361, 395, 460, 527
AcyI	GRCGYC	2 cut(s)	138, 467
AfaI	GTAC	2 cut(s)	233, 408
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	82, 496, 614
AhdI	GACNNNNNGTC	1 cut(s)	91
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	4 cut(s)	37, 220, 383, 510
AluI	AGCT	4 cut(s)	37, 220, 383, 510
Alw26I	GTCTC	2 cut(s)	178, 611
AlwI	GGATC	2 cut(s)	253, 599
AoxI	GGCC	6 cut(s)	57, 103, 189, 252, 334, 342
ApeKI	GCWGC	2 cut(s)	34, 247
ApoI	RAATTY	4 cut(s)	361, 395, 460, 527
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	365, 434
AsuII	TTCGAA	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	45, 93
BanI	GGYRCC	2 cut(s)	231, 466
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	46, 259
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	204, 357
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	178, 611
BfaI	CTAG	2 cut(s)	372, 546
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	8 cut(s)	22, 25, 35, 106, 144, 156, 192, 248
BlsI	GCNGC	8 cut(s)	23, 26, 36, 107, 145, 157, 193, 249
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	45, 93
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
BmiI	GGNNCC	2 cut(s)	233, 468
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	511
Bpu14I	TTCGAA	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	138, 467
BsaJI	CCNNGG	2 cut(s)	100, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	100, 281
BseGI	GGATG	3 cut(s)	139, 147, 397
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	549, 601
BseX3I	CGGCCG	2 cut(s)	103, 189
BseXI	GCAGC	2 cut(s)	46, 259
Bsh1285I	CGRYCG	3 cut(s)	106, 192, 271
BshFI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BshNI	GGYRCC	2 cut(s)	231, 466
BsiEI	CGRYCG	3 cut(s)	106, 192, 271
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	178, 611
BsmBI	CGTCTC	2 cut(s)	178, 611
BsnI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
Bsp119I	TTCGAA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	210, 258, 604
BspANI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BspLI	GGNNCC	2 cut(s)	233, 468
BspPI	GGATC	2 cut(s)	253, 599
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	2 cut(s)	231, 466
BsrBI	CCGCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	100, 281
BssMI	GATC	3 cut(s)	210, 258, 604
BssNI	GRCGYC	2 cut(s)	138, 467
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	198, 231, 622
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	2 cut(s)	138, 467
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	483, 511
BstF5I	GGATG	3 cut(s)	139, 147, 397
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	3 cut(s)	213, 261, 607
BstMAI	GTCTC	2 cut(s)	178, 611
BstMBI	GATC	3 cut(s)	210, 258, 604
BstMCI	CGRYCG	3 cut(s)	106, 192, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	46, 259
BstV2I	GAAGAC	1 cut(s)	70
BstZI	CGGCCG	2 cut(s)	103, 189
BsuRI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BtsCI	GGATG	3 cut(s)	139, 147, 397
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
Csp6I	GTAC	2 cut(s)	232, 407
CviQI	GTAC	2 cut(s)	232, 407
DdeI	CTNAG	2 cut(s)	483, 511
DinI	GGCGCC	1 cut(s)	468
DpnI	GATC	3 cut(s)	212, 260, 606
DpnII	GATC	3 cut(s)	210, 258, 604
DrdI	GACNNNNNNGTC	1 cut(s)	625
DriI	GACNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	2 cut(s)	103, 189
EagI	CGGCCG	2 cut(s)	103, 189
Eam1104I	CTCTTC	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	609
EclXI	CGGCCG	2 cut(s)	103, 189
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	45, 93
Eco52I	CGGCCG	2 cut(s)	103, 189
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	178, 611
FaiI	YATR	2 cut(s)	302, 456
FauI	CCCGC	3 cut(s)	26, 39, 243
Fnu4HI	GCNGC	8 cut(s)	22, 25, 35, 106, 144, 156, 192, 248
FokI	GGATG	3 cut(s)	134, 146, 404
Fsp4HI	GCNGC	8 cut(s)	22, 25, 35, 106, 144, 156, 192, 248
FspBI	CTAG	2 cut(s)	372, 546
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	8 cut(s)	22, 25, 35, 106, 144, 156, 192, 248
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	2 cut(s)	138, 467
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	3 cut(s)	320, 542, 631
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	365, 434
Hpy188I	TCNGA	3 cut(s)	241, 263, 533
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	53, 56, 143
HpyCH4III	ACNGT	3 cut(s)	198, 231, 622
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	483, 511
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 467
HspAI	GCGC	1 cut(s)	467
KasI	GGCGCC	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	210, 258, 604
LmnI	GCTCC	2 cut(s)	225, 242
LpnPI	CCDG	6 cut(s)	28, 115, 280, 309, 414, 450
Lsp1109I	GCAGC	2 cut(s)	46, 259
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	372, 546
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	212, 260, 606
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	3 cut(s)	210, 258, 604
MboII	GAAGA	5 cut(s)	70, 508, 511, 512, 626
MfeI	CAATTG	1 cut(s)	609
MluCI	AATT	7 cut(s)	161, 308, 361, 395, 460, 527, 609
Mly113I	GGCGCC	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	2 cut(s)	477, 555
MspA1I	CMGCKG	2 cut(s)	37, 250
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	152
NarI	GGCGCC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	210, 258, 604
NlaIV	GGNNCC	2 cut(s)	233, 468
NmeAIII	GCCGAG	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	542, 631
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	8 cut(s)	23, 26, 36, 107, 145, 157, 193, 249
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	233, 468
PspPI	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
PsyI	GACNNNGTC	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	233, 408
RsaNI	GTAC	2 cut(s)	232, 407
SaqAI	TTAA	2 cut(s)	477, 555
SatI	GCNGC	8 cut(s)	22, 25, 35, 106, 144, 156, 192, 248
Sau3AI	GATC	3 cut(s)	210, 258, 604
Sau96I	GGNCC	6 cut(s)	45, 58, 93, 252, 334, 343
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	9 cut(s)	39, 141, 222, 355, 377, 385, 454, 512, 603
SfaNI	GCATC	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	523
SinI	GGWCC	2 cut(s)	45, 93
Sse9I	AATT	7 cut(s)	161, 308, 361, 395, 460, 527, 609
SspDI	GGCGCC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	372, 546
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	198, 231, 622
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	213, 257, 365, 523, 629
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	7 cut(s)	161, 308, 361, 395, 460, 527, 609
TauI	GCSGC	6 cut(s)	24, 27, 108, 146, 158, 194
TfiI	GAWTC	2 cut(s)	542, 631
Tru1I	TTAA	2 cut(s)	477, 555
Tru9I	TTAA	2 cut(s)	477, 555
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	34, 247
TspDTI	ATGAA	3 cut(s)	408, 503, 519
TspGWI	ACGGA	2 cut(s)	64, 424
TspRI	CASTG	1 cut(s)	203
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	45, 93
XapI	RAATTY	4 cut(s)	361, 395, 460, 527
XspI	CTAG	2 cut(s)	372, 546
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.