Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Forward (+)

1638850 .. 1641007

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAGTTGCATTCCATGACATCAACTCGGCTGCTGGCCTCAAGAAATTGGACCAGTACTTGCTCACTCGCAGTTACATCACTGGCTATCAGGCTTCAAAGGATGATGTCACTGTGCATGCTGCTCTGTCCAAGCCTCCATCGGCTGAATACGTGAATGCGTCTCGGTGGTACAACCACATTGCTGCACTTCTTAGGATTTCGGGTGTTTCTGGAGAAGGTTGTGGTGTCAAAATTGAGGGATCTGCTCCCATCACAGCAGAAGCAGTTGCCACACCTCCAGCTGGTGATTCAAGGGCCTCTGCTGCTGAAGATGATGATGATAGTGATGTGGATCTCTTTGGTGAAGAGACTGAAGAGGAGAAGAAGGCTGCTGAAGAACGTGCAGCTGCTGTCAAGGCATCTACCAAAAAGAAAGAGTCTGGCAAGTCATCAGTTCTATTGGATGTTAAGCCATGGGATGATGAAACAGACATGAAAAAGCTTGAGGAGGCAGTAAGGAGCATTGAGGTTGAGGGCTTATTTTGGGGAGCATCTAAACTAGTACCTGTTGGGTATGGCATAAAGAAGTTGACAATTATGCTTACAATTGTTGATGACCTTGTTTCTGTGGACTCTCTGATTGAAGAACGTCTTACCGTGGAACCTATTAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAATAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 zf-CCCH

Protein Analysis

232

Amino Acids

25.04

Weight (kDa)

4.66

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	145 - 232	2.9e-31	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	250, 342
AcuI	CTGAAG	3 cut(s)	330, 375, 396
AfaI	GTAC	3 cut(s)	59, 173, 546
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	99, 294, 626, 688
AhlI	ACTAGT	1 cut(s)	541
AluBI	AGCT	4 cut(s)	284, 389, 484, 669
AluI	AGCT	4 cut(s)	284, 389, 484, 669
Alw26I	GTCTC	2 cut(s)	168, 344
AlwI	GGATC	2 cut(s)	250, 342
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	37, 297
ApeKI	GCWGC	7 cut(s)	32, 122, 185, 305, 371, 386, 389
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	2 cut(s)	52, 297
AsuHPI	GGTGA	2 cut(s)	299, 356
AvaII	GGWCC	1 cut(s)	52
BbvI	GCAGC	7 cut(s)	19, 109, 172, 292, 358, 376, 398
BccI	CCATC	2 cut(s)	148, 260
BcoDI	GTCTC	2 cut(s)	168, 344
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	1 cut(s)	542
BisI	GCNGC	7 cut(s)	33, 123, 186, 306, 372, 387, 390
BlsI	GCNGC	7 cut(s)	34, 124, 187, 307, 373, 388, 391
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	52, 297
BmiI	GGNNCC	1 cut(s)	645
BmsI	GCATC	2 cut(s)	410, 542
BpmI	CTGGAG	2 cut(s)	234, 264
BpuEI	CTTGAG	2 cut(s)	26, 506
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	455, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	55, 88
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	455, 639
BseGI	GGATG	3 cut(s)	109, 451, 466
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	55, 88
BseRI	GAGGAG	2 cut(s)	374, 503
BseXI	GCAGC	7 cut(s)	19, 109, 172, 292, 358, 376, 398
BsgI	GTGCAG	2 cut(s)	171, 405
BshFI	GGCC	2 cut(s)	39, 299
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	168, 344
BsmBI	CGTCTC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	11, 163
BsnI	GGCC	2 cut(s)	39, 299
Bsp143I	GATC	2 cut(s)	242, 334
Bsp19I	CCATGG	1 cut(s)	455
BspANI	GGCC	2 cut(s)	39, 299
BspLI	GGNNCC	1 cut(s)	645
BspPI	GGATC	2 cut(s)	250, 342
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	55, 88
BssECI	CCNNGG	2 cut(s)	455, 639
BssMI	GATC	2 cut(s)	242, 334
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	115, 640
Bst6I	CTCTTC	2 cut(s)	342, 351
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	37, 120
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	2 cut(s)	455, 639
BstF5I	GGATG	3 cut(s)	109, 451, 466
BstKTI	GATC	2 cut(s)	245, 337
BstMAI	GTCTC	2 cut(s)	168, 344
BstMBI	GATC	2 cut(s)	242, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 398
BstNSI	RCATGY	1 cut(s)	122
BstV1I	GCAGC	7 cut(s)	19, 109, 172, 292, 358, 376, 398
BstX2I	RGATCY	2 cut(s)	242, 334
BstYI	RGATCY	2 cut(s)	242, 334
BsuRI	GGCC	2 cut(s)	39, 299
BtgI	CCRYGG	2 cut(s)	455, 639
BtsCI	GGATG	3 cut(s)	109, 451, 466
BtsIMutI	CAGTG	2 cut(s)	81, 111
Cac8I	GCNNGC	2 cut(s)	37, 120
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	52, 297
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	58, 172, 545
CviAII	CATG	4 cut(s)	17, 119, 456, 475
CviQI	GTAC	3 cut(s)	58, 172, 545
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	244, 336
DpnII	GATC	2 cut(s)	242, 334
Eam1104I	CTCTTC	2 cut(s)	342, 351
EarI	CTCTTC	2 cut(s)	342, 351
Eco130I	CCWWGG	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	3 cut(s)	330, 375, 396
EcoO109I	RGGNCCY	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	4 cut(s)	20, 122, 459, 478
FaiI	YATR	9 cut(s)	18, 120, 457, 476, 558, 563, 581, 660, 697
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	4 cut(s)	16, 118, 455, 474
Fnu4HI	GCNGC	7 cut(s)	33, 123, 186, 306, 372, 387, 390
FokI	GGATG	3 cut(s)	116, 458, 473
Fsp4HI	GCNGC	7 cut(s)	33, 123, 186, 306, 372, 387, 390
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	7 cut(s)	33, 123, 186, 306, 372, 387, 390
GsuI	CTGGAG	2 cut(s)	234, 264
HaeIII	GGCC	2 cut(s)	39, 299
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	20, 122, 459, 478
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	290, 419, 614
HphI	GGTGA	2 cut(s)	299, 356
Hpy166II	GTNNAC	2 cut(s)	573, 613
Hpy188I	TCNGA	1 cut(s)	621
Hpy188III	TCNNGA	3 cut(s)	43, 213, 664
Hpy8I	GTNNAC	2 cut(s)	573, 613
HpyAV	CCTTC	3 cut(s)	212, 361, 694
HpyCH4III	ACNGT	2 cut(s)	115, 640
HpyCH4IV	ACGT	3 cut(s)	153, 382, 631
HpyCH4V	TGCA	4 cut(s)	11, 118, 188, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 398
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	3 cut(s)	153, 382, 631
Hsp92II	CATG	4 cut(s)	20, 122, 459, 478
Kzo9I	GATC	2 cut(s)	242, 334
LmnI	GCTCC	3 cut(s)	253, 501, 530
Lsp1109I	GCAGC	7 cut(s)	19, 109, 172, 292, 358, 376, 398
LweI	GCATC	2 cut(s)	410, 542
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	3 cut(s)	153, 382, 631
MaeIII	GTNAC	3 cut(s)	74, 109, 671
MalI	GATC	2 cut(s)	244, 336
MboI	GATC	2 cut(s)	242, 334
MboII	GAAGA	6 cut(s)	323, 359, 368, 376, 389, 638
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	2 cut(s)	242, 334
MluCI	AATT	4 cut(s)	47, 234, 576, 588
MlyI	GAGTC	2 cut(s)	428, 608
MseI	TTAA	2 cut(s)	450, 651
MspA1I	CMGCKG	2 cut(s)	284, 389
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	2 cut(s)	11, 163
MwoI	GCNNNNNNNGC	2 cut(s)	305, 398
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	242, 334
NlaIII	CATG	4 cut(s)	20, 122, 459, 478
NlaIV	GGNNCC	1 cut(s)	645
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	109, 671
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PctI	GAATGC	2 cut(s)	11, 163
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	7 cut(s)	34, 124, 187, 307, 373, 388, 391
PleI	GAGTC	2 cut(s)	427, 608
PpsI	GAGTC	2 cut(s)	427, 608
Ppu21I	YACGTR	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	2 cut(s)	52, 297
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	242, 334
PvuII	CAGCTG	2 cut(s)	284, 389
RsaI	GTAC	3 cut(s)	59, 173, 546
RsaNI	GTAC	3 cut(s)	58, 172, 545
SaqAI	TTAA	2 cut(s)	450, 651
SatI	GCNGC	7 cut(s)	33, 123, 186, 306, 372, 387, 390
Sau3AI	GATC	2 cut(s)	242, 334
Sau96I	GGNCC	2 cut(s)	52, 297
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	2 cut(s)	428, 608
SfaNI	GCATC	2 cut(s)	410, 542
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	41, 485
SmoI	CTYRAG	2 cut(s)	41, 485
SpeI	ACTAGT	1 cut(s)	541
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	4 cut(s)	47, 234, 576, 588
SspMI	CTAG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	115, 640
TaiI	ACGT	3 cut(s)	156, 385, 634
TasI	AATT	4 cut(s)	47, 234, 576, 588
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	450, 651
Tru9I	TTAA	2 cut(s)	450, 651
TscAI	CASTG	2 cut(s)	88, 118
TseFI	GTSAC	2 cut(s)	109, 671
TseI	GCWGC	7 cut(s)	32, 122, 185, 305, 371, 386, 389
Tsp45I	GTSAC	2 cut(s)	109, 671
TspDTI	ATGAA	3 cut(s)	480, 491, 669
TspRI	CASTG	2 cut(s)	88, 118
VpaK11BI	GGWCC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	651
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.