Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Forward (+)

18722076 .. 18722717

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTATTTTGGAGTCTTTCATGGCATGGCCTAAAAAAAAATATCTCCAGTTTGCATCTCTCAGGCAGCAATCTTCAAGCAAGTCGTCTGAGATCTTATTTTAATGCAAATAATGTTCCTACCGAGGAGGTTAACATGTTGCATAATTTTGAAATGCAACACCAGCAACCACTTCACGATGGGTCTTCCATCTCATATTCATTCATCAGTGCTTCCTCAATGAGTCATCCTCATCGTCCAGAAACCTTGACGCCTTCAAATCTCAATGATCTTTTCATGTCCCAGGTCTCATCCCCTCGATTTGCTGAACAACTTGCATACTCACCTGCTTTCTCAACCTCGAAAATATCTGGTGTTCGTAATCAACTCCAGCAGCAGCAAACCATGTTATCTCCTTCCAGAACAAATGTGTCCTCTCCAAGGACGGTTGACCAGAATCTCCTGCAAGCTTCATTTGGTCATTCCTCATCGAGGATGAAGTCACCTCAAAGCATAAAGCCTCTTTCTCCAGTAGGCACTAGGGTTTCCACTCTTGCTCAGCACAAGAAGCAGAAGCCGCTATACAACCCCAACTCATGTGATGTTGGATCCAATGGTGTTGGTTCCCCTGTACCTTCTATATCAAAATGGGAGTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 zf-CCCH

Protein Analysis

214

Amino Acids

23.54

Weight (kDa)

9.94

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	582, 595
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	420, 471
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	77, 152, 258
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	582, 595
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	3 cut(s)	66, 373, 376
ArsI	GACNNNNNNTTYG	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	315, 474
BamHI	GGATCC	1 cut(s)	587
BarI	GAAGNNNNNNTAC	2 cut(s)	545, 577
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	78, 385, 388
BccI	CCATC	2 cut(s)	173, 197
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	519, 640
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	4 cut(s)	67, 374, 377, 557
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	4 cut(s)	68, 375, 378, 558
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	589, 604
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	3 cut(s)	31, 353, 492
Bpu1102I	GCTNAGC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	123, 282, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 471
Bse1I	ACTGG	2 cut(s)	48, 509
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	123, 282, 419
BseGI	GGATG	3 cut(s)	226, 290, 480
BseLI	CCNNNNNNNGG	2 cut(s)	420, 471
BseMII	CTCAG	3 cut(s)	75, 80, 551
BseNI	ACTGG	2 cut(s)	48, 509
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	78, 385, 388
BshFI	GGCC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	420, 471
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	30
Bso31I	GGTCTC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	92, 268, 587
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	74, 81, 550
BspLI	GGNNCC	2 cut(s)	589, 604
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	582, 595
BspTNI	GGTCTC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	48, 509
BssECI	CCNNGG	3 cut(s)	123, 282, 419
BssMI	GATC	3 cut(s)	92, 268, 587
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	61, 89, 537
BstENI	CCTNNNNNAGG	2 cut(s)	418, 469
BstF5I	GGATG	3 cut(s)	226, 290, 480
BstKTI	GATC	3 cut(s)	95, 271, 590
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	92, 268, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 547, 556
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	78, 385, 388
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	92, 587
BstYI	RGATCY	2 cut(s)	92, 587
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	226, 290, 480
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	447
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	6 cut(s)	21, 26, 136, 277, 385, 576
CviJI	RGCY	4 cut(s)	30, 449, 499, 556
CviKI_1	RGCY	4 cut(s)	30, 449, 499, 556
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	3 cut(s)	61, 89, 537
DpnI	GATC	3 cut(s)	94, 270, 589
DpnII	GATC	3 cut(s)	92, 268, 587
Eco130I	CCWWGG	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	2 cut(s)	418, 469
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	6 cut(s)	24, 29, 139, 280, 388, 579
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	6 cut(s)	20, 25, 135, 276, 384, 575
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	4 cut(s)	67, 374, 377, 557
FokI	GGATG	3 cut(s)	213, 277, 487
Fsp4HI	GCNGC	4 cut(s)	67, 374, 377, 557
FspBI	CTAG	2 cut(s)	519, 640
GluI	GCNGC	4 cut(s)	67, 374, 377, 557
GsuI	CTGGAG	3 cut(s)	31, 353, 492
HaeIII	GGCC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	6 cut(s)	24, 29, 139, 280, 388, 579
HincII	GTYRAC	2 cut(s)	133, 430
HindII	GTYRAC	2 cut(s)	133, 430
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	4 cut(s)	13, 223, 436, 632
HpaI	GTTAAC	1 cut(s)	133
HphI	GGTGA	2 cut(s)	315, 474
Hpy166II	GTNNAC	3 cut(s)	133, 430, 636
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	176, 239, 399
Hpy8I	GTNNAC	3 cut(s)	133, 430, 636
HpyAV	CCTTC	3 cut(s)	264, 405, 624
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	6 cut(s)	55, 107, 142, 157, 317, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 547, 556
HpyF3I	CTNAG	3 cut(s)	61, 89, 537
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	6 cut(s)	24, 29, 139, 280, 388, 579
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	92, 268, 587
Lsp1109I	GCAGC	3 cut(s)	78, 385, 388
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	519, 640
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	3 cut(s)	94, 270, 589
MboI	GATC	3 cut(s)	92, 268, 587
MboII	GAAGA	2 cut(s)	65, 177
MflI	RGATCY	2 cut(s)	92, 587
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	22, 232, 641
MmeI	TCCRAC	1 cut(s)	565
MseI	TTAA	2 cut(s)	102, 132
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	163, 547, 556
NdeII	GATC	3 cut(s)	92, 268, 587
NlaIII	CATG	6 cut(s)	24, 29, 139, 280, 388, 579
NlaIV	GGNNCC	2 cut(s)	589, 604
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	334
PciI	ACATGT	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	68, 375, 378, 558
PleI	GAGTC	3 cut(s)	21, 231, 640
PpsI	GAGTC	3 cut(s)	21, 231, 640
PscI	ACATGT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	589, 604
PsuI	RGATCY	2 cut(s)	92, 587
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	102, 132
SatI	GCNGC	4 cut(s)	67, 374, 377, 557
Sau3AI	GATC	3 cut(s)	92, 268, 587
SchI	GAGTC	3 cut(s)	22, 232, 641
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	9 cut(s)	132, 248, 288, 328, 341, 451, 487, 616, 641
SfaNI	GCATC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	2 cut(s)	519, 640
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	298, 341, 470
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	102, 132
Tru9I	TTAA	2 cut(s)	102, 132
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	3 cut(s)	66, 373, 376
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	6 cut(s)	9, 189, 193, 265, 441, 491
TspRI	CASTG	1 cut(s)	214
XagI	CCTNNNNNAGG	2 cut(s)	418, 469
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	2 cut(s)	519, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.