zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41900 |
| fragaria_vesca | FvH4_7g01060 |
| malus_domestica | MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1 |
| prunus_persica | Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 |
| pyrus_communis | pycom03g13290 pycom11g16880 pycom12g06010 |
| rosa_chinensis | RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371 |
| rosa_laevigata | RLG00000023402 RLG00000030707 |
| rosa_multiflora | Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041 |
| rosa_roxburghii | Rroxscaffold_6G00400470 |
| rosa_rugosa | Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600 |
| rosa_samantha | Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400 |
| rosa_wichuraiana | Rw1G001200 Rw3G021670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 554, 1640 |
| AccI | GTMKAC | 1 cut(s) | 865 |
| AccII | CGCG | 1 cut(s) | 264 |
| AccIII | TCCGGA | 1 cut(s) | 849 |
| AciI | CCGC | 4 cut(s) | 198, 353, 1607, 1867 |
| AclWI | GGATC | 7 cut(s) | 359, 800, 813, 1806, 1819, 2008, 2097 |
| AcoI | YGGCCR | 1 cut(s) | 1405 |
| AcuI | CTGAAG | 3 cut(s) | 48, 1053, 1232 |
| AcvI | CACGTG | 1 cut(s) | 740 |
| AfaI | GTAC | 3 cut(s) | 746, 955, 1475 |
| AgsI | TTSAA | 9 cut(s) | 23, 85, 98, 404, 522, 693, 721, 1414, 2019 |
| AjiI | CACGTC | 1 cut(s) | 869 |
| AjnI | CCWGG | 3 cut(s) | 781, 1105, 1234 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1816, 1848 |
| Alw21I | GWGCWC | 2 cut(s) | 287, 1058 |
| Alw26I | GTCTC | 6 cut(s) | 505, 564, 625, 1024, 1140, 1656 |
| AlwI | GGATC | 7 cut(s) | 359, 800, 813, 1806, 1819, 2008, 2097 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1997 |
| Ama87I | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| Aor13HI | TCCGGA | 1 cut(s) | 849 |
| AoxI | GGCC | 5 cut(s) | 728, 1007, 1202, 1405, 1617 |
| AseI | ATTAAT | 1 cut(s) | 468 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspA2I | CCTAGG | 2 cut(s) | 422, 809 |
| AspLEI | GCGC | 1 cut(s) | 266 |
| AspS9I | GGNCC | 3 cut(s) | 103, 1203, 1630 |
| AsuC2I | CCSGG | 1 cut(s) | 1471 |
| AsuHPI | GGTGA | 7 cut(s) | 494, 736, 1134, 1458, 1557, 1595, 1668 |
| AsuNHI | GCTAGC | 1 cut(s) | 1702 |
| AvaI | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| AvaII | GGWCC | 2 cut(s) | 103, 1630 |
| AvrII | CCTAGG | 2 cut(s) | 422, 809 |
| AxyI | CCTNAGG | 1 cut(s) | 307 |
| BaeGI | GKGCMC | 1 cut(s) | 770 |
| BamHI | GGATCC | 2 cut(s) | 805, 1811 |
| BanII | GRGCYC | 2 cut(s) | 155, 1688 |
| BbrPI | CACGTG | 1 cut(s) | 740 |
| Bbv12I | GWGCWC | 2 cut(s) | 287, 1058 |
| BccI | CCATC | 9 cut(s) | 157, 571, 786, 944, 1123, 1174, 1381, 1642, 1675 |
| BciT130I | CCWGG | 3 cut(s) | 783, 1107, 1236 |
| BclI | TGATCA | 3 cut(s) | 1480, 1600, 2047 |
| BcnI | CCSGG | 1 cut(s) | 1471 |
| BcoDI | GTCTC | 6 cut(s) | 505, 564, 625, 1024, 1140, 1656 |
| BfaI | CTAG | 6 cut(s) | 423, 449, 810, 1196, 1254, 1703 |
| BfmI | CTRYAG | 3 cut(s) | 428, 993, 1845 |
| BglII | AGATCT | 2 cut(s) | 1265, 1912 |
| BlnI | CCTAGG | 2 cut(s) | 422, 809 |
| BlpI | GCTNAGC | 1 cut(s) | 2100 |
| Bme1390I | CCNGG | 4 cut(s) | 783, 1107, 1236, 1471 |
| Bme18I | GGWCC | 2 cut(s) | 103, 1630 |
| BmeT110I | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| BmgBI | CACGTC | 1 cut(s) | 869 |
| BmgT120I | GGNCC | 3 cut(s) | 103, 1203, 1630 |
| BmrFI | CCNGG | 4 cut(s) | 783, 1107, 1236, 1471 |
| BmsI | GCATC | 4 cut(s) | 238, 370, 1237, 2092 |
| BmtI | GCTAGC | 1 cut(s) | 1706 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 274, 306, 430, 462, 1636, 1668 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2100 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 1282 |
| BpuMI | CCSGG | 1 cut(s) | 1471 |
| Bsa29I | ATCGAT | 1 cut(s) | 92 |
| BsaAI | YACGTR | 1 cut(s) | 740 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaI | GGTCTC | 2 cut(s) | 505, 564 |
| BsaJI | CCNNGG | 6 cut(s) | 422, 782, 809, 1074, 1234, 1469 |
| BsaWI | WCCGGW | 1 cut(s) | 849 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 571, 601, 1326, 1356 |
| Bse118I | RCCGGY | 1 cut(s) | 1407 |
| Bse1I | ACTGG | 3 cut(s) | 1030, 2002, 2007 |
| Bse21I | CCTNAGG | 1 cut(s) | 307 |
| Bse3DI | GCAATG | 3 cut(s) | 1098, 1487, 1666 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseAI | TCCGGA | 1 cut(s) | 849 |
| BseBI | CCWGG | 3 cut(s) | 783, 1107, 1236 |
| BseCI | ATCGAT | 1 cut(s) | 92 |
| BseDI | CCNNGG | 6 cut(s) | 422, 782, 809, 1074, 1234, 1469 |
| BseGI | GGATG | 6 cut(s) | 337, 714, 778, 1373, 1634, 1653 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseMI | GCAATG | 3 cut(s) | 1098, 1487, 1666 |
| BseMII | CTCAG | 7 cut(s) | 309, 321, 753, 938, 1018, 1446, 1779 |
| BseNI | ACTGG | 3 cut(s) | 1030, 2002, 2007 |
| BseRI | GAGGAG | 4 cut(s) | 519, 522, 1035, 1919 |
| BseSI | GKGCMC | 1 cut(s) | 770 |
| BseYI | CCCAGC | 2 cut(s) | 919, 1219 |
| BsgI | GTGCAG | 1 cut(s) | 1877 |
| Bsh1236I | CGCG | 1 cut(s) | 264 |
| BshFI | GGCC | 5 cut(s) | 730, 1009, 1204, 1407, 1619 |
| BshVI | ATCGAT | 1 cut(s) | 92 |
| BsiHKAI | GWGCWC | 2 cut(s) | 287, 1058 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| BsiSI | CCGG | 3 cut(s) | 850, 1408, 1471 |
| BslFI | GGGAC | 4 cut(s) | 116, 1147, 1202, 1616 |
| BsmAI | GTCTC | 6 cut(s) | 505, 564, 625, 1024, 1140, 1656 |
| BsmFI | GGGAC | 4 cut(s) | 116, 1147, 1202, 1616 |
| BsmI | GAATGC | 1 cut(s) | 328 |
| BsnI | GGCC | 5 cut(s) | 730, 1009, 1204, 1407, 1619 |
| Bso31I | GGTCTC | 2 cut(s) | 505, 564 |
| BsoBI | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| Bsp1286I | GDGCHC | 5 cut(s) | 155, 287, 770, 1058, 1688 |
| Bsp13I | TCCGGA | 1 cut(s) | 849 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2100 |
| Bsp19I | CCATGG | 1 cut(s) | 1074 |
| BspACI | CCGC | 4 cut(s) | 198, 353, 1607, 1867 |
| BspANI | GGCC | 5 cut(s) | 730, 1009, 1204, 1407, 1619 |
| BspCNI | CTCAG | 7 cut(s) | 310, 320, 754, 937, 1017, 1447, 1778 |
| BspDI | ATCGAT | 1 cut(s) | 92 |
| BspEI | TCCGGA | 1 cut(s) | 849 |
| BspFNI | CGCG | 1 cut(s) | 264 |
| BspMAI | CTGCAG | 1 cut(s) | 997 |
| BspOI | GCTAGC | 1 cut(s) | 1706 |
| BspPI | GGATC | 7 cut(s) | 359, 800, 813, 1806, 1819, 2008, 2097 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BspTNI | GGTCTC | 2 cut(s) | 505, 564 |
| BsrDI | GCAATG | 3 cut(s) | 1098, 1487, 1666 |
| BsrFI | RCCGGY | 1 cut(s) | 1407 |
| BsrI | ACTGG | 3 cut(s) | 1030, 2002, 2007 |
| BssAI | RCCGGY | 1 cut(s) | 1407 |
| BssECI | CCNNGG | 6 cut(s) | 422, 782, 809, 1074, 1234, 1469 |
| BssT1I | CCWWGG | 3 cut(s) | 422, 809, 1074 |
| Bst2UI | CCWGG | 3 cut(s) | 783, 1107, 1236 |
| Bst4CI | ACNGT | 5 cut(s) | 19, 299, 499, 1400, 1728 |
| Bst6I | CTCTTC | 3 cut(s) | 297, 628, 1451 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1558 |
| BstBAI | YACGTR | 1 cut(s) | 740 |
| BstC8I | GCNNGC | 8 cut(s) | 43, 57, 796, 911, 1293, 1559, 1617, 1704 |
| BstDEI | CTNAG | 9 cut(s) | 307, 318, 762, 924, 1004, 1455, 1739, 1765, 2100 |
| BstDSI | CCRYGG | 1 cut(s) | 1074 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1642 |
| BstF5I | GGATG | 6 cut(s) | 337, 714, 778, 1373, 1634, 1653 |
| BstFNI | CGCG | 1 cut(s) | 264 |
| BstHHI | GCGC | 1 cut(s) | 266 |
| BstMAI | GTCTC | 6 cut(s) | 505, 564, 625, 1024, 1140, 1656 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 323, 359, 992, 1339, 1558 |
| BstNI | CCWGG | 3 cut(s) | 783, 1107, 1236 |
| BstNSI | RCATGY | 2 cut(s) | 1183, 1561 |
| BstSCI | CCNGG | 4 cut(s) | 781, 1105, 1234, 1469 |
| BstSFI | CTRYAG | 3 cut(s) | 428, 993, 1845 |
| BstSLI | GKGCMC | 1 cut(s) | 770 |
| BstUI | CGCG | 1 cut(s) | 264 |
| BstX2I | RGATCY | 6 cut(s) | 805, 1265, 1811, 1912, 2000, 2089 |
| BstYI | RGATCY | 6 cut(s) | 805, 1265, 1811, 1912, 2000, 2089 |
| Bsu15I | ATCGAT | 1 cut(s) | 92 |
| Bsu36I | CCTNAGG | 1 cut(s) | 307 |
| BsuRI | GGCC | 5 cut(s) | 730, 1009, 1204, 1407, 1619 |
| BsuTUI | ATCGAT | 1 cut(s) | 92 |
| BtgI | CCRYGG | 1 cut(s) | 1074 |
| BtrI | CACGTC | 1 cut(s) | 869 |
| BtsCI | GGATG | 6 cut(s) | 337, 714, 778, 1373, 1634, 1653 |
| BtsI | GCAGTG | 2 cut(s) | 285, 990 |
| BtsIMutI | CAGTG | 5 cut(s) | 285, 295, 990, 1995, 2014 |
| Cac8I | GCNNGC | 8 cut(s) | 43, 57, 796, 911, 1293, 1559, 1617, 1704 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1997 |
| CfoI | GCGC | 1 cut(s) | 266 |
| Cfr10I | RCCGGY | 1 cut(s) | 1407 |
| Cfr13I | GGNCC | 3 cut(s) | 103, 1203, 1630 |
| ClaI | ATCGAT | 1 cut(s) | 92 |
| CseI | GACGC | 1 cut(s) | 618 |
| Csp6I | GTAC | 3 cut(s) | 745, 954, 1474 |
| CviQI | GTAC | 3 cut(s) | 745, 954, 1474 |
| DdeI | CTNAG | 9 cut(s) | 307, 318, 762, 924, 1004, 1455, 1739, 1765, 2100 |
| EaeI | YGGCCR | 1 cut(s) | 1405 |
| Eam1104I | CTCTTC | 3 cut(s) | 297, 628, 1451 |
| EarI | CTCTTC | 3 cut(s) | 297, 628, 1451 |
| Eco130I | CCWWGG | 3 cut(s) | 422, 809, 1074 |
| Eco147I | AGGCCT | 2 cut(s) | 730, 1619 |
| Eco24I | GRGCYC | 2 cut(s) | 155, 1688 |
| Eco31I | GGTCTC | 2 cut(s) | 505, 564 |
| Eco47I | GGWCC | 2 cut(s) | 103, 1630 |
| Eco57I | CTGAAG | 3 cut(s) | 48, 1053, 1232 |
| Eco72I | CACGTG | 1 cut(s) | 740 |
| Eco81I | CCTNAGG | 1 cut(s) | 307 |
| Eco88I | CYCGRG | 3 cut(s) | 1051, 1689, 1981 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1642 |
| EcoO109I | RGGNCCY | 2 cut(s) | 103, 1630 |
| EcoRII | CCWGG | 3 cut(s) | 781, 1105, 1234 |
| EcoT14I | CCWWGG | 3 cut(s) | 422, 809, 1074 |
| EcoT22I | ATGCAT | 1 cut(s) | 2085 |
| EcoT38I | GRGCYC | 2 cut(s) | 155, 1688 |
| ErhI | CCWWGG | 3 cut(s) | 422, 809, 1074 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 444, 476 |
| FaqI | GGGAC | 4 cut(s) | 116, 1147, 1202, 1616 |
| FauI | CCCGC | 1 cut(s) | 1614 |
| FbaI | TGATCA | 3 cut(s) | 1480, 1600, 2047 |
| FblI | GTMKAC | 1 cut(s) | 865 |
| FokI | GGATG | 6 cut(s) | 344, 721, 765, 1360, 1621, 1660 |
| FriOI | GRGCYC | 2 cut(s) | 155, 1688 |
| FspBI | CTAG | 6 cut(s) | 423, 449, 810, 1196, 1254, 1703 |
| GlaI | GCGC | 1 cut(s) | 265 |
| GsaI | CCCAGC | 2 cut(s) | 923, 1223 |
| HaeIII | GGCC | 5 cut(s) | 730, 1009, 1204, 1407, 1619 |
| HapII | CCGG | 3 cut(s) | 850, 1408, 1471 |
| HgaI | GACGC | 1 cut(s) | 618 |
| HhaI | GCGC | 1 cut(s) | 266 |
| Hin6I | GCGC | 1 cut(s) | 264 |
| HinP1I | GCGC | 1 cut(s) | 264 |
| HincII | GTYRAC | 1 cut(s) | 655 |
| HindII | GTYRAC | 1 cut(s) | 655 |
| HinfI | GANTC | 3 cut(s) | 490, 1943, 2039 |
| HpaII | CCGG | 3 cut(s) | 850, 1408, 1471 |
| HphI | GGTGA | 7 cut(s) | 494, 736, 1134, 1458, 1557, 1595, 1668 |
| Hpy166II | GTNNAC | 5 cut(s) | 485, 655, 737, 866, 1745 |
| Hpy188I | TCNGA | 5 cut(s) | 147, 247, 634, 708, 1480 |
| Hpy188III | TCNNGA | 5 cut(s) | 449, 676, 850, 1436, 2087 |
| Hpy8I | GTNNAC | 5 cut(s) | 485, 655, 737, 866, 1745 |
| HpyAV | CCTTC | 7 cut(s) | 117, 142, 634, 669, 795, 847, 1149 |
| HpyCH4III | ACNGT | 5 cut(s) | 19, 299, 499, 1400, 1728 |
| HpyCH4IV | ACGT | 2 cut(s) | 739, 868 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 323, 359, 992, 1339, 1558 |
| HpyF3I | CTNAG | 9 cut(s) | 307, 318, 762, 924, 1004, 1455, 1739, 1765, 2100 |
| HpySE526I | ACGT | 2 cut(s) | 739, 868 |
| HspAI | GCGC | 1 cut(s) | 264 |
| KflI | GGGWCCC | 2 cut(s) | 103, 1630 |
| Kpn2I | TCCGGA | 1 cut(s) | 849 |
| Ksp22I | TGATCA | 3 cut(s) | 1480, 1600, 2047 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LmnI | GCTCC | 6 cut(s) | 282, 1347, 1763, 1869, 1906, 2063 |
| LweI | GCATC | 4 cut(s) | 238, 370, 1237, 2092 |
| MaeI | CTAG | 6 cut(s) | 423, 449, 810, 1196, 1254, 1703 |
| MaeII | ACGT | 2 cut(s) | 739, 868 |
| MaeIII | GTNAC | 4 cut(s) | 1182, 1840, 1929, 1987 |
| MflI | RGATCY | 6 cut(s) | 805, 1265, 1811, 1912, 2000, 2089 |
| MhlI | GDGCHC | 5 cut(s) | 155, 287, 770, 1058, 1688 |
| MluCI | AATT | 6 cut(s) | 370, 1387, 1538, 1569, 1792, 1853 |
| MmeI | TCCRAC | 3 cut(s) | 614, 1535, 1785 |
| Mph1103I | ATGCAT | 1 cut(s) | 2085 |
| MroI | TCCGGA | 1 cut(s) | 849 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MseI | TTAA | 6 cut(s) | 168, 188, 468, 1395, 1533, 1938 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MspA1I | CMGCKG | 1 cut(s) | 1526 |
| MspI | CCGG | 3 cut(s) | 850, 1408, 1471 |
| MspR9I | CCNGG | 4 cut(s) | 783, 1107, 1236, 1471 |
| Mva1269I | GAATGC | 1 cut(s) | 328 |
| MvaI | CCWGG | 3 cut(s) | 783, 1107, 1236 |
| MvnI | CGCG | 1 cut(s) | 264 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 323, 359, 992, 1339, 1558 |
| NciI | CCSGG | 1 cut(s) | 1471 |
| NcoI | CCATGG | 1 cut(s) | 1074 |
| NheI | GCTAGC | 1 cut(s) | 1702 |
| NmeAIII | GCCGAG | 1 cut(s) | 1734 |
| NmuCI | GTSAC | 2 cut(s) | 1182, 1929 |
| NsiI | ATGCAT | 1 cut(s) | 2085 |
| NspI | RCATGY | 2 cut(s) | 1183, 1561 |
| PaeI | GCATGC | 1 cut(s) | 1561 |
| PaeR7I | CTCGAG | 1 cut(s) | 1051 |
| PceI | AGGCCT | 2 cut(s) | 730, 1619 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PctI | GAATGC | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 3 cut(s) | 490, 1943, 2039 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 554, 1640 |
| PmaCI | CACGTG | 1 cut(s) | 740 |
| PmlI | CACGTG | 1 cut(s) | 740 |
| Ppu21I | YACGTR | 1 cut(s) | 740 |
| PpuMI | RGGWCCY | 2 cut(s) | 103, 1630 |
| PshBI | ATTAAT | 1 cut(s) | 468 |
| Psp5II | RGGWCCY | 2 cut(s) | 103, 1630 |
| Psp6I | CCWGG | 3 cut(s) | 781, 1105, 1234 |
| PspCI | CACGTG | 1 cut(s) | 740 |
| PspFI | CCCAGC | 2 cut(s) | 919, 1219 |
| PspGI | CCWGG | 3 cut(s) | 781, 1105, 1234 |
| PspPI | GGNCC | 3 cut(s) | 103, 1203, 1630 |
| PspPPI | RGGWCCY | 2 cut(s) | 103, 1630 |
| PspXI | VCTCGAGB | 1 cut(s) | 1051 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1726, 1758 |
| PstI | CTGCAG | 1 cut(s) | 997 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1997 |
| PsuI | RGATCY | 6 cut(s) | 805, 1265, 1811, 1912, 2000, 2089 |
| PvuII | CAGCTG | 1 cut(s) | 1526 |
| RsaI | GTAC | 3 cut(s) | 746, 955, 1475 |
| RsaNI | GTAC | 3 cut(s) | 745, 954, 1474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 6 cut(s) | 168, 188, 468, 1395, 1533, 1938 |
| Sau96I | GGNCC | 3 cut(s) | 103, 1203, 1630 |
| ScrFI | CCNGG | 4 cut(s) | 783, 1107, 1236, 1471 |
| SduI | GDGCHC | 5 cut(s) | 155, 287, 770, 1058, 1688 |
| SfaNI | GCATC | 4 cut(s) | 238, 370, 1237, 2092 |
| SfcI | CTRYAG | 3 cut(s) | 428, 993, 1845 |
| Sfr274I | CTCGAG | 1 cut(s) | 1051 |
| SinI | GGWCC | 2 cut(s) | 103, 1630 |
| SlaI | CTCGAG | 1 cut(s) | 1051 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 3 cut(s) | 50, 1051, 1261 |
| SmoI | CTYRAG | 3 cut(s) | 50, 1051, 1261 |
| SphI | GCATGC | 1 cut(s) | 1561 |
| Sse9I | AATT | 6 cut(s) | 370, 1387, 1538, 1569, 1792, 1853 |
| SseBI | AGGCCT | 2 cut(s) | 730, 1619 |
| SsiI | CCGC | 4 cut(s) | 198, 353, 1607, 1867 |
| SspMI | CTAG | 6 cut(s) | 423, 449, 810, 1196, 1254, 1703 |
| StuI | AGGCCT | 2 cut(s) | 730, 1619 |
| StyD4I | CCNGG | 4 cut(s) | 781, 1105, 1234, 1469 |
| StyI | CCWWGG | 3 cut(s) | 422, 809, 1074 |
| TaaI | ACNGT | 5 cut(s) | 19, 299, 499, 1400, 1728 |
| TaiI | ACGT | 2 cut(s) | 742, 871 |
| TaqI | TCGA | 5 cut(s) | 92, 599, 931, 1052, 1323 |
| TasI | AATT | 6 cut(s) | 370, 1387, 1538, 1569, 1792, 1853 |
| TauI | GCSGC | 2 cut(s) | 200, 356 |
| TfiI | GAWTC | 3 cut(s) | 490, 1943, 2039 |
| Tru1I | TTAA | 6 cut(s) | 168, 188, 468, 1395, 1533, 1938 |
| Tru9I | TTAA | 6 cut(s) | 168, 188, 468, 1395, 1533, 1938 |
| TscAI | CASTG | 5 cut(s) | 292, 302, 997, 2002, 2014 |
| TseFI | GTSAC | 2 cut(s) | 1182, 1929 |
| Tsp45I | GTSAC | 2 cut(s) | 1182, 1929 |
| TspDTI | ATGAA | 5 cut(s) | 17, 705, 809, 1562, 1866 |
| TspRI | CASTG | 5 cut(s) | 292, 302, 997, 2002, 2014 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 554, 1640 |
| VpaK11BI | GGWCC | 2 cut(s) | 103, 1630 |
| VspI | ATTAAT | 1 cut(s) | 468 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1642 |
| XbaI | TCTAGA | 1 cut(s) | 448 |
| XceI | RCATGY | 2 cut(s) | 1183, 1561 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1917 |
| XhoI | CTCGAG | 1 cut(s) | 1051 |
| XmaJI | CCTAGG | 2 cut(s) | 422, 809 |
| XmiI | GTMKAC | 1 cut(s) | 865 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 6 cut(s) | 423, 449, 810, 1196, 1254, 1703 |
| Zsp2I | ATGCAT | 1 cut(s) | 2085 |