Rorug03G0191600

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003620
Physical Location & Seq
Reverse (-)
16833435 .. 16835826
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0191600.1

Sequence Viewer

Length: 1047 bp
ATGCCTGAATTCCCTTCTAAATTCAGTGCCAAGTCTTTAGGCCTTGTTGAAACTCCAGGAGGCATGTTGGTGCCCACTGTAGTCATGATGCCAAAGCCATTAATAGAGCTGCCAAGTGTAAAGAAGAAAAGAGGCAAGCCTTTGGGCTCCAAAAACAAAACTCTTAAGTCGAAGAAAGTCTCTGCTGATGAGCGACTCTCCAGTATCTGGGGATTGAAGGAGAGAGTTTTGATCCGACAAGAGGAGGGAGGAATTCTTGTCTTCCAATTCAAGGATCAGGAGGAGAAGGATCGAGTGCTTAATAATGGACCTTGGTACTTTTGCAATTCCATGCTGCTGTTAGCAGACTATGACGGTATCAGAGGCCTTGAAGACACGCCGTTGCATCGTCTCGAGGTGTGTGTGGCGGTCAAACGCTTGCGTGTAGCCATACGCAATGCTAAAGCCCTAACCCTAATCGGGAATGCTTTGGGGAGGTATGAGAAGTGTCACGACATTTGCACGGGTTGTGGCTACTTTGGTCATGCTGAGGGAGGCTGCGACATAGTGCTGATAGAGGCTAAGACGGCGCTGGGGTTGGTGATGGAATCTGAGGTTGGGACTGGCTTGGGTCAGGAAACGGAGGAGGCACGACCAGGGTCTGGGGCTGTTGTGATTTTCTTGGCGGGAAACCATAATTTTGAATTAGGGTTTCCTGCTGCAACTTGTGGCAGTGGGCCAGAGGAGCTGCTGGACCTTGAGGCTTTGACTGGGCCGAGGAGATTAATTGGGTCTACTTTTGGGGAGCATGCTAGTGTGTTGGGTCTTCGAAAGCAGTGGGAGGATGATCATGTTCTGGATGGGAAGCATCTGAAAGCGATTGTCCCTGTGGAGGTGCAGCTAGAAGCGTTAGTGGATGTACCGGTTGCCTTTATTGAGAAAGTCTCGAAGAAGAAAGGTAGACCCTGTGGTTGGCTGAACAAACCTAAGCTTGCAGCAACAGATGATGGGAGACTGGCGGTGAAGGGGATGGATCATAGGTCCCCTTCCAGGAGGATTAGGTGTTGA

Protein Analysis

348

Amino Acids

38.0

Weight (kDa)

8.75

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 66 - 117 1.2e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccB7I CCANNNNNTGG 2 cut(s) 207, 641
AccI GTMKAC 2 cut(s) 773, 940
AciI CCGC 3 cut(s) 407, 665, 998
AclWI GGATC 4 cut(s) 226, 282, 297, 1020
AcsI RAATTY 3 cut(s) 8, 20, 252
AfaI GTAC 2 cut(s) 317, 900
AfiI CCNNNNNNNGG 8 cut(s) 207, 241, 271, 459, 641, 871, 951, 1029
AflII CTTAAG 1 cut(s) 164
AgeI ACCGGT 1 cut(s) 901
AgsI TTSAA 5 cut(s) 50, 217, 271, 371, 683
AjnI CCWGG 3 cut(s) 55, 634, 1028
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 4 cut(s) 109, 727, 880, 970
AluI AGCT 4 cut(s) 109, 727, 880, 970
Alw26I GTCTC 4 cut(s) 184, 395, 928, 985
AlwI GGATC 4 cut(s) 226, 282, 297, 1020
AlwNI CAGNNNCTG 2 cut(s) 207, 641
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 40, 364, 716, 752
ApeKI GCWGC 7 cut(s) 109, 334, 537, 698, 727, 877, 974
ApoI RAATTY 3 cut(s) 8, 20, 252
AseI ATTAAT 2 cut(s) 101, 764
AsiGI ACCGGT 1 cut(s) 901
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 5 cut(s) 308, 716, 733, 752, 1020
AsuHPI GGTGA 2 cut(s) 592, 1012
AsuII TTCGAA 1 cut(s) 808
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 3 cut(s) 308, 733, 1020
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 3 cut(s) 253, 378, 797
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 7 cut(s) 96, 321, 524, 685, 714, 889, 986
BccI CCATC 4 cut(s) 577, 833, 980, 1003
BceAI ACGGC 2 cut(s) 364, 582
BciT130I CCWGG 3 cut(s) 57, 636, 1030
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 4 cut(s) 184, 395, 928, 985
BfaI CTAG 2 cut(s) 792, 881
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 572
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 7 cut(s) 110, 335, 538, 699, 728, 878, 975
BlsI GCNGC 7 cut(s) 111, 336, 539, 700, 729, 879, 976
Bme1390I CCNGG 3 cut(s) 57, 636, 1030
Bme18I GGWCC 3 cut(s) 308, 733, 1020
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 308, 716, 733, 752, 1020
BmiI GGNNCC 3 cut(s) 72, 148, 1022
BmrFI CCNGG 3 cut(s) 57, 636, 1030
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 3 cut(s) 78, 394, 856
BmuI ACTGGG 1 cut(s) 759
BoxI GACNNNNGTC 1 cut(s) 637
BpiI GAAGAC 3 cut(s) 253, 378, 797
BplI GAGNNNNNCTC 4 cut(s) 182, 214, 908, 940
BpmI CTGGAG 2 cut(s) 39, 184
Bpu10I CCTNAGC 2 cut(s) 528, 966
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 3 cut(s) 311, 635, 755
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 8 cut(s) 207, 241, 271, 459, 641, 871, 951, 1029
Bse118I RCCGGY 1 cut(s) 901
Bse1I ACTGG 4 cut(s) 201, 607, 754, 999
Bse3DI GCAATG 1 cut(s) 442
BseBI CCWGG 3 cut(s) 57, 636, 1030
BseDI CCNNGG 3 cut(s) 311, 635, 755
BseGI GGATG 4 cut(s) 829, 844, 901, 1014
BseLI CCNNNNNNNGG 8 cut(s) 207, 241, 271, 459, 641, 871, 951, 1029
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 519, 582
BseNI ACTGG 4 cut(s) 201, 607, 754, 999
BseRI GAGGAG 5 cut(s) 257, 296, 638, 737, 772
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 7 cut(s) 96, 321, 524, 685, 714, 889, 986
BseYI CCCAGC 1 cut(s) 571
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 4 cut(s) 42, 366, 718, 754
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 1 cut(s) 901
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 902
BslFI GGGAC 3 cut(s) 613, 848, 1006
BslI CCNNNNNNNGG 8 cut(s) 207, 241, 271, 459, 641, 871, 951, 1029
BsmAI GTCTC 4 cut(s) 184, 395, 928, 985
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 3 cut(s) 613, 848, 1006
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 4 cut(s) 42, 366, 718, 754
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 75, 149
Bsp143I GATC 5 cut(s) 231, 274, 289, 826, 1012
BspACI CCGC 3 cut(s) 407, 665, 998
BspANI GGCC 4 cut(s) 42, 366, 718, 754
BspCNI CTCAG 2 cut(s) 520, 583
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 72, 148, 1022
BspPI GGATC 4 cut(s) 226, 282, 297, 1020
BspT104I TTCGAA 1 cut(s) 808
BspT107I GGYRCC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 901
BsrI ACTGG 4 cut(s) 201, 607, 754, 999
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 3 cut(s) 311, 635, 755
BssMI GATC 5 cut(s) 231, 274, 289, 826, 1012
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 57, 636, 1030
Bst4CI ACNGT 2 cut(s) 79, 356
BstAFI CTTAAG 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 4 cut(s) 137, 419, 789, 972
BstDEI CTNAG 4 cut(s) 528, 561, 591, 966
BstF5I GGATG 4 cut(s) 829, 844, 901, 1014
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 5 cut(s) 234, 277, 292, 829, 1015
BstMAI GTCTC 4 cut(s) 184, 395, 928, 985
BstMBI GATC 5 cut(s) 231, 274, 289, 826, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 566, 724
BstNI CCWGG 3 cut(s) 57, 636, 1030
BstNSI RCATGY 2 cut(s) 67, 791
BstPAI GACNNNNGTC 1 cut(s) 637
BstSCI CCNGG 3 cut(s) 55, 634, 1028
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 7 cut(s) 96, 321, 524, 685, 714, 889, 986
BstV2I GAAGAC 3 cut(s) 253, 378, 797
BsuRI GGCC 4 cut(s) 42, 366, 718, 754
BtsCI GGATG 4 cut(s) 829, 844, 901, 1014
BtsI GCAGTG 2 cut(s) 718, 821
BtsIMutI CAGTG 4 cut(s) 31, 75, 718, 821
Cac8I GCNNGC 4 cut(s) 137, 419, 789, 972
CaiI CAGNNNCTG 2 cut(s) 207, 641
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 901
Cfr13I GGNCC 5 cut(s) 308, 716, 733, 752, 1020
Csp6I GTAC 2 cut(s) 316, 899
CspAI ACCGGT 1 cut(s) 901
CviAII CATG 6 cut(s) 64, 85, 331, 524, 788, 830
CviQI GTAC 2 cut(s) 316, 899
DdeI CTNAG 4 cut(s) 528, 561, 591, 966
DpnI GATC 5 cut(s) 233, 276, 291, 828, 1014
DpnII GATC 5 cut(s) 231, 274, 289, 826, 1012
Eco130I CCWWGG 1 cut(s) 311
Eco147I AGGCCT 2 cut(s) 42, 366
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 308, 733, 1020
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRI GAATTC 2 cut(s) 8, 252
EcoRII CCWGG 3 cut(s) 55, 634, 1028
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 6 cut(s) 67, 88, 334, 527, 791, 833
FaqI GGGAC 3 cut(s) 613, 848, 1006
FatI CATG 6 cut(s) 63, 84, 330, 523, 787, 829
FauI CCCGC 1 cut(s) 658
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 2 cut(s) 773, 940
Fnu4HI GCNGC 7 cut(s) 110, 335, 538, 699, 728, 878, 975
FokI GGATG 4 cut(s) 836, 851, 908, 1021
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 7 cut(s) 110, 335, 538, 699, 728, 878, 975
FspBI CTAG 2 cut(s) 792, 881
GlaI GCGC 1 cut(s) 570
GluI GCNGC 7 cut(s) 110, 335, 538, 699, 728, 878, 975
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 2 cut(s) 39, 184
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 4 cut(s) 42, 366, 718, 754
HapII CCGG 1 cut(s) 902
HhaI GCGC 1 cut(s) 571
Hin1II CATG 6 cut(s) 67, 88, 334, 527, 791, 833
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 2 cut(s) 195, 587
HpaII CCGG 1 cut(s) 902
HphI GGTGA 2 cut(s) 592, 1012
Hpy166II GTNNAC 2 cut(s) 774, 941
Hpy188I TCNGA 4 cut(s) 236, 362, 592, 852
Hpy188III TCNNGA 8 cut(s) 85, 278, 392, 460, 491, 614, 836, 925
Hpy8I GTNNAC 2 cut(s) 774, 941
HpyAV CCTTC 5 cut(s) 24, 211, 280, 997, 1035
HpyCH4III ACNGT 2 cut(s) 79, 356
HpyCH4V TGCA 6 cut(s) 324, 385, 501, 701, 877, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 724
HpyF3I CTNAG 4 cut(s) 528, 561, 591, 966
Hsp92II CATG 6 cut(s) 67, 88, 334, 527, 791, 833
HspAI GCGC 1 cut(s) 569
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 231, 274, 289, 826, 1012
LmnI GCTCC 3 cut(s) 152, 724, 784
Lsp1109I GCAGC 7 cut(s) 96, 321, 524, 685, 714, 889, 986
LweI GCATC 3 cut(s) 78, 394, 856
MaeI CTAG 2 cut(s) 792, 881
MaeIII GTNAC 1 cut(s) 488
MalI GATC 5 cut(s) 233, 276, 291, 828, 1014
MboI GATC 5 cut(s) 231, 274, 289, 826, 1012
MboII GAAGA 7 cut(s) 136, 184, 253, 383, 797, 940, 943
MhlI GDGCHC 2 cut(s) 75, 149
MluCI AATT 8 cut(s) 8, 20, 252, 266, 325, 676, 683, 765
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 259
MseI TTAA 4 cut(s) 101, 165, 300, 764
MslI CAYNNNNRTG 2 cut(s) 68, 792
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 3 cut(s) 57, 636, 1030
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 3 cut(s) 57, 636, 1030
MwoI GCNNNNNNNGC 2 cut(s) 566, 724
NdeII GATC 5 cut(s) 231, 274, 289, 826, 1012
NlaIII CATG 6 cut(s) 67, 88, 334, 527, 791, 833
NlaIV GGNNCC 3 cut(s) 72, 148, 1022
NmeAIII GCCGAG 1 cut(s) 780
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 2 cut(s) 67, 791
NspV TTCGAA 1 cut(s) 808
PaeI GCATGC 1 cut(s) 791
PaeR7I CTCGAG 1 cut(s) 392
PagI TCATGA 1 cut(s) 84
PceI AGGCCT 2 cut(s) 42, 366
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 587
PflMI CCANNNNNTGG 2 cut(s) 207, 641
PfoI TCCNGGA 2 cut(s) 55, 1028
PinAI ACCGGT 1 cut(s) 901
PkrI GCNGC 7 cut(s) 111, 336, 539, 700, 729, 879, 976
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PpuMI RGGWCCY 1 cut(s) 1020
PshAI GACNNNNGTC 1 cut(s) 637
PshBI ATTAAT 2 cut(s) 101, 764
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 3 cut(s) 55, 634, 1028
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 3 cut(s) 55, 634, 1028
PspN4I GGNNCC 3 cut(s) 72, 148, 1022
PspPI GGNCC 5 cut(s) 308, 716, 733, 752, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PstNI CAGNNNCTG 2 cut(s) 207, 641
RsaI GTAC 2 cut(s) 317, 900
RsaNI GTAC 2 cut(s) 316, 899
RseI CAYNNNNRTG 2 cut(s) 68, 792
SaqAI TTAA 4 cut(s) 101, 165, 300, 764
SatI GCNGC 7 cut(s) 110, 335, 538, 699, 728, 878, 975
Sau3AI GATC 5 cut(s) 231, 274, 289, 826, 1012
Sau96I GGNCC 5 cut(s) 308, 716, 733, 752, 1020
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 3 cut(s) 57, 636, 1030
SduI GDGCHC 2 cut(s) 75, 149
SfaNI GCATC 3 cut(s) 78, 394, 856
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 3 cut(s) 308, 733, 1020
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 68, 792
SmlI CTYRAG 3 cut(s) 164, 392, 737
SmoI CTYRAG 3 cut(s) 164, 392, 737
SphI GCATGC 1 cut(s) 791
Sse9I AATT 8 cut(s) 8, 20, 252, 266, 325, 676, 683, 765
SseBI AGGCCT 2 cut(s) 42, 366
SsiI CCGC 3 cut(s) 407, 665, 998
SspMI CTAG 2 cut(s) 792, 881
StuI AGGCCT 2 cut(s) 42, 366
StyD4I CCNGG 3 cut(s) 55, 634, 1028
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 79, 356
TaqI TCGA 5 cut(s) 170, 292, 393, 808, 926
TasI AATT 8 cut(s) 8, 20, 252, 266, 325, 676, 683, 765
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 4 cut(s) 101, 165, 300, 764
Tru9I TTAA 4 cut(s) 101, 165, 300, 764
TscAI CASTG 4 cut(s) 31, 82, 718, 821
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 7 cut(s) 109, 334, 537, 698, 727, 877, 974
Tsp45I GTSAC 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 4 cut(s) 31, 82, 718, 821
Van91I CCANNNNNTGG 2 cut(s) 207, 641
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 308, 733, 1020
VspI ATTAAT 2 cut(s) 101, 764
XapI RAATTY 3 cut(s) 8, 20, 252
XceI RCATGY 2 cut(s) 67, 791
XhoI CTCGAG 1 cut(s) 392
XmiI GTMKAC 2 cut(s) 773, 940
XspI CTAG 2 cut(s) 792, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.