Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003620

Physical Location & Seq

Genomic Coordinates Reverse (-)

1636634 .. 1638668

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCGAAGAGAACAACGCACACGTACTCGAGCGAGGACGCAGCTCCAGATGGACCTGACTCTGATCTCTTCGTCTATTACTGCAAGCACTGTGGATCTCACCTCCTCATAACTGATACCCAGTTGCAGAAAATGCCCAAAAGGAAGACGGACAAAGCTTATGTGTTGGACAAGACCAAACACCTTGCAAGGCTCAACATTAGTGAGGGTGGAAAAGTTATACTCAAAAGGAGTGAAGGGAAATTAGAGAAGCAGTTTCGAATGAACTGTGTTGGTTGCGAACTCTTTGTCTTCTATCGCTCAGAAGAAGATTTGGAAGGTGCTTCTTTGATTTATGTTGTTGACGGTGCTCTTAGCACAGTTGCTGCTGAAACCAATCCACAGGATGCTCCTGTGCCACCCTGCATATCACAAATAGATGGAGGACTTGTTCAAGTGGCTATTGAAGTGGAAGATCGTGCACAACGCTCAGCAATCACAAGAGTAAATGCCGATGATGTTAGAGTTACTGTAGCTGCACCTGCAGCTCGAGGAGAAGCAAATAATGAACTCTTGGAATTTATGGGAAAAGTGTTGGGTCTCAGACTAAGCCAGATGACTCTTCAGAGAGGATGGAATAACAAATCGAAACTTCTTGTGGTTGAAGATTTGTCTGCTAGACAAGTATATGAGAAACTGCTGGAGGCTGTGCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 zf-CCCH

Protein Analysis

232

Amino Acids

25.72

Weight (kDa)

6.13

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STEEP1	PF25809	20 - 125	2.8e-34	STEEP1 domain
DUF167	PF02594	144 - 215	7.8e-18	Uncharacterised ACR, YggU family COG1872

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41900
fragaria_vesca	FvH4_7g01060
malus_domestica	MD03G1175400.v1.1 MD12G1068100.v1.1 MD14G1068200.v1.1
prunus_persica	Prupe.4G248900_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1 Prupe.7G065800_v2.0.a1
pyrus_communis	pycom03g13290 pycom11g16880 pycom12g06010
rosa_chinensis	RchiOBHm_Chr1g0316051 RchiOBHm_Chr3g0481371
rosa_laevigata	RLG00000023402 RLG00000030707
rosa_multiflora	Rmu_sc0000064.1_g000020 Rmu_sc0002014.1_g000008 Rmu_sc0002531.1_g000041
rosa_roxburghii	Rroxscaffold_6G00400470
rosa_rugosa	Rorug01G0008400 Rorug01G0008400 Rorug01G0008500 Rorug03G0191500 Rorug03G0191600
rosa_samantha	Rh1AG018800 Rh1BG012300 Rh1CG016100 Rh1DG012500 Rh3AG242500 Rh3BG277500 Rh3CG272500 Rh3DG269400
rosa_wichuraiana	Rw1G001200 Rw3G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	434, 446, 644
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	4 cut(s)	44, 158, 515, 527
AluI	AGCT	4 cut(s)	44, 158, 515, 527
Alw21I	GWGCWC	2 cut(s)	352, 463
Alw26I	GTCTC	1 cut(s)	584
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	2 cut(s)	28, 528
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	41, 365, 515, 524
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	259
AvaI	CYCGRG	2 cut(s)	28, 528
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	152, 283
Bbv12I	GWGCWC	2 cut(s)	352, 463
BbvI	GCAGC	4 cut(s)	53, 352, 502, 536
BccI	CCATC	3 cut(s)	44, 413, 606
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	2 cut(s)	510, 522
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	42, 366, 516, 525
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	4 cut(s)	43, 367, 517, 526
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	28, 528
BmgT120I	GGNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	152, 283
BpmI	CTGGAG	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	391, 617
BseMII	CTCAG	3 cut(s)	315, 483, 595
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	95, 546
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	53, 352, 502, 536
BsgI	GTGCAG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	352, 463
BsiHKCI	CYCGRG	2 cut(s)	28, 528
BsmAI	GTCTC	1 cut(s)	584
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	2 cut(s)	28, 528
Bsp119I	TTCGAA	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	352, 463
Bsp143I	GATC	3 cut(s)	64, 95, 454
Bsp1720I	GCTNAGC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	314, 482, 594
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	64, 95, 454
Bst4CI	ACNGT	5 cut(s)	92, 269, 347, 361, 511
Bst6I	CTCTTC	3 cut(s)	2, 74, 606
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	5 cut(s)	301, 353, 469, 581, 587
BstF5I	GGATG	2 cut(s)	391, 617
BstKTI	GATC	3 cut(s)	67, 98, 457
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	64, 95, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
BstSFI	CTRYAG	2 cut(s)	510, 522
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	53, 352, 502, 536
BstV2I	GAAGAC	2 cut(s)	152, 283
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	391, 617
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviJI	RGCY	8 cut(s)	44, 158, 193, 440, 515, 527, 591, 686
CviKI_1	RGCY	8 cut(s)	44, 158, 193, 440, 515, 527, 591, 686
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	5 cut(s)	301, 353, 469, 581, 587
DpnI	GATC	3 cut(s)	66, 97, 456
DpnII	GATC	3 cut(s)	64, 95, 454
Eam1104I	CTCTTC	3 cut(s)	2, 74, 606
EarI	CTCTTC	3 cut(s)	2, 74, 606
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	28, 528
FaiI	YATR	8 cut(s)	110, 162, 221, 336, 407, 563, 667, 669
Fnu4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FokI	GGATG	2 cut(s)	398, 624
Fsp4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	4 cut(s)	42, 366, 516, 525
GsuI	CTGGAG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	59, 598
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	343, 461
Hpy188I	TCNGA	4 cut(s)	64, 304, 584, 606
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	343, 461
HpyAV	CCTTC	2 cut(s)	230, 311
HpyCH4III	ACNGT	5 cut(s)	92, 269, 347, 361, 511
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	8 cut(s)	84, 127, 188, 405, 461, 518, 524, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
HpyF3I	CTNAG	5 cut(s)	301, 353, 469, 581, 587
HpySE526I	ACGT	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	64, 95, 454
LmnI	GCTCC	2 cut(s)	49, 394
LpnPI	CCDG	9 cut(s)	60, 69, 134, 368, 405, 415, 534, 605, 665
Lsp1109I	GCAGC	4 cut(s)	53, 352, 502, 536
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	66, 97, 456
MboI	GATC	3 cut(s)	64, 95, 454
MboII	GAAGA	9 cut(s)	19, 61, 157, 283, 317, 320, 464, 593, 656
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	352, 463
MluCI	AATT	2 cut(s)	242, 557
MlyI	GAGTC	2 cut(s)	53, 592
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	28, 113, 116, 199, 416, 524, 602, 676
MwoI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
NdeII	GATC	3 cut(s)	64, 95, 454
NspV	TTCGAA	1 cut(s)	259
PaeR7I	CTCGAG	2 cut(s)	28, 528
PaqCI	CACCTGC	1 cut(s)	529
PkrI	GCNGC	4 cut(s)	43, 367, 517, 526
PleI	GAGTC	2 cut(s)	53, 592
PpsI	GAGTC	2 cut(s)	53, 592
Ppu21I	YACGTR	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	2 cut(s)	28, 528
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	4 cut(s)	42, 366, 516, 525
Sau3AI	GATC	3 cut(s)	64, 95, 454
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	53, 592
SduI	GDGCHC	2 cut(s)	352, 463
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	510, 522
Sfr274I	CTCGAG	2 cut(s)	28, 528
SfuI	TTCGAA	1 cut(s)	259
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	2 cut(s)	28, 528
SmlI	CTYRAG	2 cut(s)	28, 528
SmoI	CTYRAG	2 cut(s)	28, 528
Sse9I	AATT	2 cut(s)	242, 557
SspMI	CTAG	1 cut(s)	657
TaaI	ACNGT	5 cut(s)	92, 269, 347, 361, 511
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	29, 259, 529, 626
TasI	AATT	2 cut(s)	242, 557
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	4 cut(s)	41, 365, 515, 524
TspDTI	ATGAA	2 cut(s)	278, 561
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	557
XhoI	CTCGAG	2 cut(s)	28, 528
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.