Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Forward (+)

28994751 .. 28996608

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1200600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTAGAGAAACTCGCCGAAACCTCGGAGGCCACCGCCGCTGCTACCGCTGAAGGCGCTAAACACATGGACCTAGAAGCTTCAGAGCCTGCTGCCGCTCAAAATTCCGATGAGATTGAAGCCATTAATGGGGAGGTGGAGGCAAACTCGAAGCGGGTCAGGGACGAGGAGGGGAGTGAAGGAAACGATGCTAAGAAGACGAAGGTGGAGAAGTCGCCGGAGGAAGAACGGTTGGAGGAGAAGTTAGGGGAAGGGGAGAACTCGGGTCGGGTCAGCTTGGGTCCGAAGAGTTTTGGGTCTTCGGTGGAGATGTTCGATTACTTCTACAAATTCCTCCATTACTGGCCTACTGATCTCAATGTCAATAAGTATGAGCATCTGGTTTTGCTCGACTTGCTTAAGAAGGGTCATGCCGAGCCCGATAAGAAGATTGGTGGAGGGGTCAAGGCATTCCAAGTTCGGATCCATCCGTTGTATAAAAGTAGGTGCTTCTTCCTCATTAGGGAAGATGAAGTTGTTGATGATTTTAGCTTCAGGAAGTGTGTGGATCAGATACTTCCCTTGCCTGAGAACATGAAAGCAAACGCTGATGCGAATAAAGCCTTAGGTGGCAAGGGCGGCAGGGGTGGTGGCAGTGGTGGAAGAGGAGGCTGGCGTGGTCGTGGAAGGGGTAAAGCCGAGAAACTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

231

Amino Acids

25.22

Weight (kDa)

5.7

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	110 - 182	9.6e-26	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	6 cut(s)	36, 39, 48, 96, 154, 618
AclWI	GGATC	3 cut(s)	457, 470, 555
AcsI	RAATTY	2 cut(s)	103, 329
AcuI	CTGAAG	3 cut(s)	66, 72, 517
AfiI	CCNNNNNNNGG	2 cut(s)	129, 502
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	3 cut(s)	80, 276, 531
AluI	AGCT	3 cut(s)	80, 276, 531
AlwI	GGATC	3 cut(s)	457, 470, 555
AlwNI	CAGNNNCTG	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	2 cut(s)	30, 344
ApeKI	GCWGC	2 cut(s)	41, 92
ApoI	RAATTY	2 cut(s)	103, 329
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	70, 281
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	70, 281
AxyI	CCTNAGG	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	203, 291
BbvI	GCAGC	2 cut(s)	28, 79
BccI	CCATC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	5 cut(s)	39, 42, 93, 96, 619
BlsI	GCNGC	5 cut(s)	40, 43, 94, 97, 620
Bme18I	GGWCC	2 cut(s)	70, 281
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	70, 281
BmiI	GGNNCC	2 cut(s)	282, 464
BmsI	GCATC	3 cut(s)	178, 385, 580
BpiI	GAAGAC	2 cut(s)	203, 291
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 502
Bse1I	ACTGG	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	129, 502
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	3 cut(s)	182, 251, 660
BseXI	GCAGC	2 cut(s)	28, 79
BshFI	GGCC	2 cut(s)	32, 346
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	129, 502
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	32, 346
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	352, 462, 547
BspACI	CCGC	6 cut(s)	36, 39, 48, 96, 154, 618
BspANI	GGCC	2 cut(s)	32, 346
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	282, 464
BspPI	GGATC	3 cut(s)	457, 470, 555
BspTI	CTTAAG	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	352, 462, 547
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	2 cut(s)	281, 637
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	90, 653
BstDEI	CTNAG	3 cut(s)	192, 567, 604
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	355, 465, 550
BstMBI	GATC	3 cut(s)	352, 462, 547
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 394, 599, 618
BstV1I	GCAGC	2 cut(s)	28, 79
BstV2I	GAAGAC	2 cut(s)	203, 291
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	32, 346
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	90, 653
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	70, 281
CviAII	CATG	3 cut(s)	67, 410, 574
DdeI	CTNAG	3 cut(s)	192, 567, 604
DpnI	GATC	3 cut(s)	354, 464, 549
DpnII	GATC	3 cut(s)	352, 462, 547
Eam1104I	CTCTTC	2 cut(s)	281, 637
EarI	CTCTTC	2 cut(s)	281, 637
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	70, 281
Eco57I	CTGAAG	3 cut(s)	66, 72, 517
Eco81I	CCTNAGG	1 cut(s)	604
Eco88I	CYCGRG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	3 cut(s)	70, 413, 577
FaiI	YATR	5 cut(s)	68, 372, 411, 477, 575
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	66, 409, 573
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	39, 42, 93, 96, 619
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	5 cut(s)	39, 42, 93, 96, 619
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	5 cut(s)	39, 42, 93, 96, 619
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	32, 346
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	70, 413, 577
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	78
HpaII	CCGG	1 cut(s)	218
Hpy188I	TCNGA	6 cut(s)	28, 85, 109, 285, 462, 552
Hpy188III	TCNNGA	1 cut(s)	535
HpyAV	CCTTC	6 cut(s)	47, 173, 196, 245, 397, 660
HpyCH4III	ACNGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 394, 599, 618
HpyF3I	CTNAG	3 cut(s)	192, 567, 604
Hsp92II	CATG	3 cut(s)	70, 413, 577
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	352, 462, 547
LpnPI	CCDG	9 cut(s)	102, 145, 231, 328, 365, 520, 579, 607, 637
Lsp1109I	GCAGC	2 cut(s)	28, 79
LweI	GCATC	3 cut(s)	178, 385, 580
MaeI	CTAG	1 cut(s)	74
MalI	GATC	3 cut(s)	354, 464, 549
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	3 cut(s)	352, 462, 547
MboII	GAAGA	8 cut(s)	208, 236, 291, 298, 439, 484, 518, 654
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	103, 329
MmeI	TCCRAC	1 cut(s)	213
MseI	TTAA	2 cut(s)	126, 399
MspA1I	CMGCKG	2 cut(s)	41, 50
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	449
MwoI	GCNNNNNNNGC	6 cut(s)	38, 47, 56, 394, 599, 618
NdeII	GATC	3 cut(s)	352, 462, 547
NlaIII	CATG	3 cut(s)	70, 413, 577
NlaIV	GGNNCC	2 cut(s)	282, 464
NmeAIII	GCCGAG	1 cut(s)	439
PctI	GAATGC	1 cut(s)	449
PkrI	GCNGC	5 cut(s)	40, 43, 94, 97, 620
PshBI	ATTAAT	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	282, 464
PspPI	GGNCC	2 cut(s)	70, 281
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	126, 399
SatI	GCNGC	5 cut(s)	39, 42, 93, 96, 619
Sau3AI	GATC	3 cut(s)	352, 462, 547
Sau96I	GGNCC	2 cut(s)	70, 281
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	9 cut(s)	26, 75, 82, 138, 207, 278, 488, 533, 610
SfaNI	GCATC	3 cut(s)	178, 385, 580
SinI	GGWCC	2 cut(s)	70, 281
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	103, 329
SsiI	CCGC	6 cut(s)	36, 39, 48, 96, 154, 618
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	149, 315, 390
TasI	AATT	2 cut(s)	103, 329
TauI	GCSGC	3 cut(s)	41, 98, 621
Tru1I	TTAA	2 cut(s)	126, 399
Tru9I	TTAA	2 cut(s)	126, 399
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	2 cut(s)	41, 92
TspDTI	ATGAA	2 cut(s)	525, 590
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	70, 281
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	103, 329
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.