Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Forward (+)

15793525 .. 15795499

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G193800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCAGAGAAGACAGTCTCTGAACTCGCCGAAACCAACTCGGAAACCGCCGCCGCTGCCGAGGACATGGAACTAGAAGCCTCAGAGCCCGCCCCGGCCGAAAAACCCGATGAGGGCACTAACGGCGAGGCTGAGGCGAACGCGAAACGGCTCAGGGATGAGGAGGGGAGTGAAGGAAACGACGCCGTGGCGAAGAAGACGAAGGTGGAGAAGTCGCCGGAAGAGGAGCGGTTGGAGAAGTTGGGGGAAGGAAAAGAGTCGGGTCGGGTCAGCCTGGGCCCGAAGAGTTTCGGGTCGTCCGTGGAGATGTTTGACTACTTCTACAGGTTGCTTCATTATTGGCCGACTGATCTCAGTGTTAATAAGTATGAACATCTGGTTTTGCTGGACTTGCTTAAGAAGGGTCATGCAGAGCCTGATAAGAAGATCGGTGGAGGGGTCCAGGCTTTCCAAGTTCGAACCCATCCATTGTATAAAAGCAGGTGCTTCTTCCTCATTAGGGAAGATGAAACTGTTGATGATTTTAGTTTCAGGAAGTGTGTGGATCAGATACTTCCCTTGCCAGAGAACATGAAAGCACACTCCGACGCCAATAAAGCCTTAGGTGGGAAAGGTGGCCGGGGTGGCGGCGGTGGAAGAGGAGGTTGGCGTGGCCGTGGAAGGGGTAAGCCGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

227

Amino Acids

24.81

Weight (kDa)

5.7

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	471
Acc36I	ACCTGC	1 cut(s)	471
AccBSI	CCGCTC	1 cut(s)	229
AccII	CGCG	1 cut(s)	143
AciI	CCGC	7 cut(s)	48, 51, 54, 90, 229, 627, 630
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	4 cut(s)	96, 341, 616, 652
AcyI	GRCGYC	2 cut(s)	183, 588
AfiI	CCNNNNNNNGG	4 cut(s)	113, 499, 606, 661
AflII	CTTAAG	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	273, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	552
AlwNI	CAGNNNCTG	2 cut(s)	20, 416
AoxI	GGCC	5 cut(s)	96, 277, 341, 616, 652
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	277, 278, 439
AsuC2I	CCSGG	2 cut(s)	95, 620
AsuII	TTCGAA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	601
BaeGI	GKGCMC	2 cut(s)	119, 281
BanII	GRGCYC	2 cut(s)	90, 281
BbsI	GAAGAC	2 cut(s)	17, 203
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	4 cut(s)	139, 164, 170, 639
BciT130I	CCWGG	2 cut(s)	275, 443
BcnI	CCSGG	2 cut(s)	95, 620
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	624
BisI	GCNGC	4 cut(s)	51, 54, 57, 628
BlsI	GCNGC	4 cut(s)	52, 55, 58, 629
Bme1390I	CCNGG	4 cut(s)	95, 275, 443, 620
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	277, 278, 439
BmiI	GGNNCC	2 cut(s)	279, 440
BmrFI	CCNGG	4 cut(s)	95, 275, 443, 620
BpiI	GAAGAC	2 cut(s)	17, 203
Bpu10I	CCTNAGC	2 cut(s)	132, 152
Bpu14I	TTCGAA	1 cut(s)	457
BpuMI	CCSGG	2 cut(s)	95, 620
BsaHI	GRCGYC	2 cut(s)	183, 588
BsaJI	CCNNGG	7 cut(s)	60, 93, 186, 274, 300, 619, 655
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 499, 606, 661
Bse21I	CCTNAGG	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	275, 443
BseDI	CCNNGG	7 cut(s)	60, 93, 186, 274, 300, 619, 655
BseGI	GGATG	2 cut(s)	163, 463
BseLI	CCNNNNNNNGG	4 cut(s)	113, 499, 606, 661
BseMII	CTCAG	4 cut(s)	96, 123, 166, 367
BseRI	GAGGAG	3 cut(s)	176, 239, 654
BseSI	GKGCMC	2 cut(s)	119, 281
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	98, 279, 343, 618, 654
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	95, 218, 619
BslI	CCNNNNNNNGG	4 cut(s)	113, 499, 606, 661
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	5 cut(s)	98, 279, 343, 618, 654
Bsp119I	TTCGAA	1 cut(s)	457
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	90, 119, 281
Bsp143I	GATC	3 cut(s)	349, 426, 544
BspACI	CCGC	7 cut(s)	48, 51, 54, 90, 229, 627, 630
BspANI	GGCC	5 cut(s)	98, 279, 343, 618, 654
BspCNI	CTCAG	4 cut(s)	95, 124, 165, 366
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	279, 440
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	229
BssECI	CCNNGG	7 cut(s)	60, 93, 186, 274, 300, 619, 655
BssMI	GATC	3 cut(s)	349, 426, 544
BssNI	GRCGYC	2 cut(s)	183, 588
Bst2UI	CCWGG	2 cut(s)	275, 443
Bst4CI	ACNGT	2 cut(s)	16, 514
Bst6I	CTCTTC	3 cut(s)	216, 278, 631
BstACI	GRCGYC	2 cut(s)	183, 588
BstAFI	CTTAAG	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	5 cut(s)	82, 132, 152, 353, 601
BstDSI	CCRYGG	3 cut(s)	186, 300, 655
BstF5I	GGATG	2 cut(s)	163, 463
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	3 cut(s)	352, 429, 547
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	349, 426, 544
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 123, 391, 596, 624
BstNI	CCWGG	2 cut(s)	275, 443
BstSCI	CCNGG	4 cut(s)	93, 273, 441, 618
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	2 cut(s)	119, 281
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	17, 203
BstZI	CGGCCG	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	601
BsuRI	GGCC	5 cut(s)	98, 279, 343, 618, 654
BtgI	CCRYGG	3 cut(s)	186, 300, 655
BtsCI	GGATG	2 cut(s)	163, 463
BtsIMutI	CAGTG	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	2 cut(s)	20, 416
Cfr13I	GGNCC	3 cut(s)	277, 278, 439
CseI	GACGC	2 cut(s)	191, 596
CviAII	CATG	3 cut(s)	67, 407, 571
DdeI	CTNAG	5 cut(s)	82, 132, 152, 353, 601
DpnI	GATC	3 cut(s)	351, 428, 546
DpnII	GATC	3 cut(s)	349, 426, 544
EaeI	YGGCCR	4 cut(s)	96, 341, 616, 652
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	216, 278, 631
EarI	CTCTTC	3 cut(s)	216, 278, 631
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	90, 281
Eco47I	GGWCC	1 cut(s)	439
Eco52I	CGGCCG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	273, 441
EcoT38I	GRGCYC	2 cut(s)	90, 281
FaeI	CATG	3 cut(s)	70, 410, 574
FaiI	YATR	5 cut(s)	68, 369, 408, 474, 572
FatI	CATG	3 cut(s)	66, 406, 570
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	51, 54, 57, 628
FokI	GGATG	2 cut(s)	170, 450
FriOI	GRGCYC	2 cut(s)	90, 281
Fsp4HI	GCNGC	4 cut(s)	51, 54, 57, 628
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	51, 54, 57, 628
HaeIII	GGCC	5 cut(s)	98, 279, 343, 618, 654
HapII	CCGG	3 cut(s)	95, 218, 619
HgaI	GACGC	2 cut(s)	191, 596
Hin1I	GRCGYC	2 cut(s)	183, 588
Hin1II	CATG	3 cut(s)	70, 410, 574
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	95, 218, 619
Hpy188I	TCNGA	5 cut(s)	22, 43, 85, 549, 586
Hpy188III	TCNNGA	1 cut(s)	532
Hpy99I	CGWCG	2 cut(s)	185, 590
HpyAV	CCTTC	5 cut(s)	167, 196, 242, 394, 654
HpyCH4III	ACNGT	2 cut(s)	16, 514
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 123, 391, 596, 624
HpyF3I	CTNAG	5 cut(s)	82, 132, 152, 353, 601
Hsp92I	GRCGYC	2 cut(s)	183, 588
Hsp92II	CATG	3 cut(s)	70, 410, 574
Kzo9I	GATC	3 cut(s)	349, 426, 544
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	74
MalI	GATC	3 cut(s)	351, 428, 546
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	3 cut(s)	349, 426, 544
MboII	GAAGA	9 cut(s)	22, 205, 208, 233, 295, 436, 481, 515, 648
MhlI	GDGCHC	3 cut(s)	90, 119, 281
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	213, 609
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	2 cut(s)	360, 396
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	95, 218, 619
MspR9I	CCNGG	4 cut(s)	95, 275, 443, 620
MvaI	CCWGG	2 cut(s)	275, 443
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	5 cut(s)	56, 123, 391, 596, 624
NciI	CCSGG	2 cut(s)	95, 620
NdeII	GATC	3 cut(s)	349, 426, 544
NlaIII	CATG	3 cut(s)	70, 410, 574
NlaIV	GGNNCC	2 cut(s)	279, 440
NmeAIII	GCCGAG	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	52, 55, 58, 629
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	273, 441
PspGI	CCWGG	2 cut(s)	273, 441
PspN4I	GGNNCC	2 cut(s)	279, 440
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	3 cut(s)	277, 278, 439
PstNI	CAGNNNCTG	2 cut(s)	20, 416
SaqAI	TTAA	2 cut(s)	360, 396
SatI	GCNGC	4 cut(s)	51, 54, 57, 628
Sau3AI	GATC	3 cut(s)	349, 426, 544
Sau96I	GGNCC	3 cut(s)	277, 278, 439
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	4 cut(s)	95, 275, 443, 620
SduI	GDGCHC	3 cut(s)	90, 119, 281
SetI	ASST	6 cut(s)	207, 329, 485, 607, 616, 646
SfcI	CTRYAG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SsiI	CCGC	7 cut(s)	48, 51, 54, 90, 229, 627, 630
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	93, 273, 441, 618
TaaI	ACNGT	2 cut(s)	16, 514
TaqI	TCGA	1 cut(s)	457
TauI	GCSGC	3 cut(s)	53, 56, 630
Tru1I	TTAA	2 cut(s)	360, 396
Tru9I	TTAA	2 cut(s)	360, 396
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	323, 384, 522, 587
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.