Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004621.1

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Forward (+)

85681 .. 87518

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004621.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggcagaggcaaccgtcgctgaaatcgccgagaccgagaccgacaccaacaccgcggcggccgaggatatggacctcgaaaccgccccggcccaaaacccggacgaggcccagaacggcgacgcaaactctaagcgggccagggaagaagaagagagcggcggcgacggcgcggcgaagaagacgaaggtggaggaggagaagtcagcggaagagcaacgattggagaagttaggggaaggagagagcgaggcgggtcgggtcatcttgggtccgaagagtttcgggtcggccgttgagatgttcgactatttctataagctactccattactggccaaccgatcttaatattaataagtatgaatatctggttttgctggacttgctcaagaagggtcactctgagcctgataaaaagattggtggaggaatccaggctttccaagttcggttccacccattgtatagaagtagatgctacttccttgttagagaagatggagccagtgatgattttagtttcaggaagtgtgtggatcatatacttcccttgccagagaacatgaaagcacactctgatgccaacaaagccttaggcggtggcaagggtggtggggggagaggaagctggcgtggccgtggaaggggcaggtcaagaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

221

Amino Acids

24.37

Weight (kDa)

5.3

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	642
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	2 cut(s)	56, 173
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	4 cut(s)	60, 291, 335, 637
AfiI	CCNNNNNNNGG	3 cut(s)	100, 106, 646
AjnI	CCWGG	2 cut(s)	140, 435
AluBI	AGCT	2 cut(s)	322, 630
AluI	AGCT	2 cut(s)	322, 630
Alw26I	GTCTC	2 cut(s)	26, 32
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	7 cut(s)	60, 90, 108, 138, 291, 335, 637
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	5 cut(s)	73, 91, 109, 138, 272
AsuC2I	CCSGG	2 cut(s)	89, 101
AvaII	GGWCC	2 cut(s)	73, 272
AxyI	CCTNAGG	1 cut(s)	595
BalI	TGGCCA	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	4 cut(s)	133, 184, 278, 624
BciT130I	CCWGG	2 cut(s)	142, 437
BcnI	CCSGG	2 cut(s)	89, 101
BcoDI	GTCTC	2 cut(s)	26, 32
BfuAI	ACCTGC	1 cut(s)	642
BisI	GCNGC	5 cut(s)	57, 60, 160, 163, 174
BlsI	GCNGC	5 cut(s)	58, 61, 161, 164, 175
Bme1390I	CCNGG	4 cut(s)	89, 101, 142, 437
Bme18I	GGWCC	2 cut(s)	73, 272
BmgT120I	GGNCC	5 cut(s)	73, 91, 109, 138, 272
BmiI	GGNNCC	3 cut(s)	273, 455, 505
BmrFI	CCNGG	4 cut(s)	89, 101, 142, 437
BmsI	GCATC	2 cut(s)	467, 571
BpiI	GAAGAC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	89, 101
BsaI	GGTCTC	2 cut(s)	26, 32
BsaJI	CCNNGG	5 cut(s)	54, 63, 87, 141, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 106, 646
Bse1I	ACTGG	2 cut(s)	338, 507
Bse21I	CCTNAGG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	142, 437
BseDI	CCNNGG	5 cut(s)	54, 63, 87, 141, 640
BseLI	CCNNNNNNNGG	3 cut(s)	100, 106, 646
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	338, 507
BseRI	GAGGAG	2 cut(s)	209, 212
BseX3I	CGGCCG	2 cut(s)	60, 291
Bsh1236I	CGCG	2 cut(s)	56, 173
Bsh1285I	CGRYCG	2 cut(s)	63, 294
BshFI	GGCC	7 cut(s)	62, 92, 110, 140, 293, 337, 639
BsiEI	CGRYCG	2 cut(s)	63, 294
BsiSI	CCGG	2 cut(s)	89, 101
BslI	CCNNNNNNNGG	3 cut(s)	100, 106, 646
BsmAI	GTCTC	2 cut(s)	26, 32
BsnI	GGCC	7 cut(s)	62, 92, 110, 140, 293, 337, 639
Bso31I	GGTCTC	2 cut(s)	26, 32
Bsp143I	GATC	2 cut(s)	343, 538
BspANI	GGCC	7 cut(s)	62, 92, 110, 140, 293, 337, 639
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	56, 173
BspLI	GGNNCC	3 cut(s)	273, 455, 505
BspMI	ACCTGC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	546
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	2 cut(s)	26, 32
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	338, 507
BssECI	CCNNGG	5 cut(s)	54, 63, 87, 141, 640
BssMI	GATC	2 cut(s)	343, 538
Bst2UI	CCWGG	2 cut(s)	142, 437
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	147, 207, 272
BstC8I	GCNNGC	2 cut(s)	138, 632
BstDEI	CTNAG	3 cut(s)	132, 405, 595
BstDSI	CCRYGG	2 cut(s)	54, 640
BstFNI	CGCG	2 cut(s)	56, 173
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	346, 541
BstMAI	GTCTC	2 cut(s)	26, 32
BstMBI	GATC	2 cut(s)	343, 538
BstMCI	CGRYCG	2 cut(s)	63, 294
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 168, 385, 590, 636
BstNI	CCWGG	2 cut(s)	142, 437
BstSCI	CCNGG	4 cut(s)	87, 99, 140, 435
BstUI	CGCG	2 cut(s)	56, 173
BstV2I	GAAGAC	1 cut(s)	188
BstZI	CGGCCG	2 cut(s)	60, 291
Bsu36I	CCTNAGG	1 cut(s)	595
BsuRI	GGCC	7 cut(s)	62, 92, 110, 140, 293, 337, 639
BtgI	CCRYGG	2 cut(s)	54, 640
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	2 cut(s)	138, 632
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	5 cut(s)	73, 91, 109, 138, 272
Cfr42I	CCGCGG	1 cut(s)	57
CseI	GACGC	1 cut(s)	131
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviAII	CATG	1 cut(s)	565
DdeI	CTNAG	3 cut(s)	132, 405, 595
DpnI	GATC	2 cut(s)	345, 540
DpnII	GATC	2 cut(s)	343, 538
EaeI	YGGCCR	4 cut(s)	60, 291, 335, 637
EagI	CGGCCG	2 cut(s)	60, 291
Eam1104I	CTCTTC	3 cut(s)	147, 207, 272
EarI	CTCTTC	3 cut(s)	147, 207, 272
EclXI	CGGCCG	2 cut(s)	60, 291
Eco31I	GGTCTC	2 cut(s)	26, 32
Eco47I	GGWCC	2 cut(s)	73, 272
Eco52I	CGGCCG	2 cut(s)	60, 291
Eco81I	CCTNAGG	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	140, 435
FaeI	CATG	1 cut(s)	568
FaiI	YATR	7 cut(s)	71, 318, 363, 468, 543, 545, 566
FatI	CATG	1 cut(s)	564
FauI	CCCGC	2 cut(s)	129, 247
Fnu4HI	GCNGC	5 cut(s)	57, 60, 160, 163, 174
Fsp4HI	GCNGC	5 cut(s)	57, 60, 160, 163, 174
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	5 cut(s)	57, 60, 160, 163, 174
HaeIII	GGCC	7 cut(s)	62, 92, 110, 140, 293, 337, 639
HapII	CCGG	2 cut(s)	89, 101
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	89, 101
Hpy188I	TCNGA	3 cut(s)	276, 406, 580
Hpy188III	TCNNGA	3 cut(s)	391, 526, 657
Hpy99I	CGWCG	3 cut(s)	20, 125, 170
HpyAV	CCTTC	4 cut(s)	181, 233, 388, 639
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 168, 385, 590, 636
HpyF3I	CTNAG	3 cut(s)	132, 405, 595
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	171
KspI	CCGCGG	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	343, 538
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	503
LweI	GCATC	2 cut(s)	467, 571
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	345, 540
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	2 cut(s)	343, 538
MboII	GAAGA	8 cut(s)	158, 161, 164, 190, 193, 224, 289, 509
MlsI	TGGCCA	1 cut(s)	337
MluNI	TGGCCA	1 cut(s)	337
MnlI	CCTC	8 cut(s)	58, 86, 100, 187, 190, 244, 422, 617
Mox20I	TGGCCA	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	2 cut(s)	348, 354
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	2 cut(s)	56, 209
MspI	CCGG	2 cut(s)	89, 101
MspR9I	CCNGG	4 cut(s)	89, 101, 142, 437
MvaI	CCWGG	2 cut(s)	142, 437
MvnI	CGCG	2 cut(s)	56, 173
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 168, 385, 590, 636
NciI	CCSGG	2 cut(s)	89, 101
NdeII	GATC	2 cut(s)	343, 538
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	3 cut(s)	273, 455, 505
NmeAIII	GCCGAG	2 cut(s)	55, 88
NmuCI	GTSAC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 291
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	58, 61, 161, 164, 175
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	140, 435
PspGI	CCWGG	2 cut(s)	140, 435
PspN4I	GGNNCC	3 cut(s)	273, 455, 505
PspPI	GGNCC	5 cut(s)	73, 91, 109, 138, 272
RseI	CAYNNNNRTG	1 cut(s)	579
SacII	CCGCGG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	348, 354
SatI	GCNGC	5 cut(s)	57, 60, 160, 163, 174
Sau3AI	GATC	2 cut(s)	343, 538
Sau96I	GGNCC	5 cut(s)	73, 91, 109, 138, 272
ScrFI	CCNGG	4 cut(s)	89, 101, 142, 437
SetI	ASST	5 cut(s)	78, 192, 324, 632, 656
SfaNI	GCATC	2 cut(s)	467, 571
Sfr303I	CCGCGG	1 cut(s)	57
SgrBI	CCGCGG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	73, 272
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SspI	AATATT	1 cut(s)	352
StyD4I	CCNGG	4 cut(s)	87, 99, 140, 435
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	78, 306
TaqII	GACCGA	2 cut(s)	50, 56
TauI	GCSGC	5 cut(s)	59, 62, 162, 165, 176
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	348, 354
Tru9I	TTAA	2 cut(s)	348, 354
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	378, 581
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	73, 272
VspI	ATTAAT	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.