Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Reverse (-)

64236027 .. 64238053

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAGAGACAACCGTCGCTGAAATCGCCGAGACCAACACCAACACCGCGGCGGCCGAGGACATGGACCTTGAAACCGCCCCAGCCCAAAACCCAGACGAGGCCCAGAACGGCGACGCAAACTCTAAGCGGGCCAGGGAAGAAGAAAAAGAAGAAGAGAGCGGCGGCGACGCGAAGAAGACGAAGGTGGAGGAGGAGAAGTCAGCGGAAGAGCAACGATTGGAGAAGTTAGGGGAAGGAGAGAGCGAGGCGGGTCGGGTCATCTTGGGTCCGAAGAGTTTCGGGTCGGCCGTTGAGATGTTCGACTATTTCTATAAGCTACTCCATTACTGGCCAACCGATCTTAATATTAATAAGTATGAATATCTGGTTTTGCTGGACTTGCTCAAGAAGGGTCACTCTGAGCCTGATAAAAAGATTGGTGGAGGAATCCAGGCTTTCCAAGTTCGGTTCCACCCATTGTATAGAAGTAGGTGCTACTTCCTTGTTAGAGAAGATGGAGCCAGTGATGATTTTAGTTTCAGGAAGTGTGTGGATCATATACTTCCCTTGCCAGAGAACATGAAAGCACACGCTGATGCCAACAAAGCCTTAGGCGGTGGCAAGGGTGGTGGGGGGAGAGGAAGCTGGCGTGGCCGTGGAAGGGGCAGATCAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

220

Amino Acids

24.41

Weight (kDa)

5.42

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	106 - 178	2.3e-25	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	2 cut(s)	50, 173
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	4 cut(s)	54, 288, 332, 634
AfiI	CCNNNNNNNGG	2 cut(s)	100, 643
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	134, 432
AluBI	AGCT	2 cut(s)	319, 627
AluI	AGCT	2 cut(s)	319, 627
Alw26I	GTCTC	2 cut(s)	2, 26
AlwI	GGATC	1 cut(s)	543
AoxI	GGCC	6 cut(s)	54, 102, 132, 288, 332, 634
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	4 cut(s)	67, 103, 132, 269
AvaII	GGWCC	2 cut(s)	67, 269
AxyI	CCTNAGG	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	185
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	3 cut(s)	127, 275, 621
BciT130I	CCWGG	2 cut(s)	136, 434
BcoDI	GTCTC	2 cut(s)	2, 26
BisI	GCNGC	4 cut(s)	51, 54, 163, 166
BlsI	GCNGC	4 cut(s)	52, 55, 164, 167
Bme1390I	CCNGG	2 cut(s)	136, 434
Bme18I	GGWCC	2 cut(s)	67, 269
BmgT120I	GGNCC	4 cut(s)	67, 103, 132, 269
BmiI	GGNNCC	3 cut(s)	270, 452, 502
BmrFI	CCNGG	2 cut(s)	136, 434
BmsI	GCATC	1 cut(s)	568
BoxI	GACNNNNGTC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	4 cut(s)	48, 57, 135, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 643
Bse1I	ACTGG	2 cut(s)	335, 504
Bse21I	CCTNAGG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	136, 434
BseDI	CCNNGG	4 cut(s)	48, 57, 135, 637
BseLI	CCNNNNNNNGG	2 cut(s)	100, 643
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	335, 504
BseRI	GAGGAG	2 cut(s)	206, 209
BseX3I	CGGCCG	2 cut(s)	54, 288
BseYI	CCCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	50, 173
Bsh1285I	CGRYCG	2 cut(s)	57, 291
BshFI	GGCC	6 cut(s)	56, 104, 134, 290, 334, 636
BsiEI	CGRYCG	2 cut(s)	57, 291
BslI	CCNNNNNNNGG	2 cut(s)	100, 643
BsmAI	GTCTC	2 cut(s)	2, 26
BsnI	GGCC	6 cut(s)	56, 104, 134, 290, 334, 636
Bso31I	GGTCTC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	340, 535, 650
BspANI	GGCC	6 cut(s)	56, 104, 134, 290, 334, 636
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	50, 173
BspLI	GGNNCC	3 cut(s)	270, 452, 502
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	335, 504
BssECI	CCNNGG	4 cut(s)	48, 57, 135, 637
BssMI	GATC	3 cut(s)	340, 535, 650
Bst2UI	CCWGG	2 cut(s)	136, 434
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	150, 204, 269
BstC8I	GCNNGC	2 cut(s)	132, 629
BstDEI	CTNAG	3 cut(s)	126, 402, 592
BstDSI	CCRYGG	2 cut(s)	48, 637
BstFNI	CGCG	2 cut(s)	50, 173
BstKTI	GATC	3 cut(s)	343, 538, 653
BstMAI	GTCTC	2 cut(s)	2, 26
BstMBI	GATC	3 cut(s)	340, 535, 650
BstMCI	CGRYCG	2 cut(s)	57, 291
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 382, 587, 633
BstNI	CCWGG	2 cut(s)	136, 434
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	134, 432
BstUI	CGCG	2 cut(s)	50, 173
BstV2I	GAAGAC	1 cut(s)	185
BstZI	CGGCCG	2 cut(s)	54, 288
Bsu36I	CCTNAGG	1 cut(s)	592
BsuRI	GGCC	6 cut(s)	56, 104, 134, 290, 334, 636
BtgI	CCRYGG	2 cut(s)	48, 637
BtsIMutI	CAGTG	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	132, 629
Cfr13I	GGNCC	4 cut(s)	67, 103, 132, 269
Cfr42I	CCGCGG	1 cut(s)	51
CseI	GACGC	2 cut(s)	125, 179
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	2 cut(s)	64, 562
DdeI	CTNAG	3 cut(s)	126, 402, 592
DpnI	GATC	3 cut(s)	342, 537, 652
DpnII	GATC	3 cut(s)	340, 535, 650
EaeI	YGGCCR	4 cut(s)	54, 288, 332, 634
EagI	CGGCCG	2 cut(s)	54, 288
Eam1104I	CTCTTC	3 cut(s)	150, 204, 269
EarI	CTCTTC	3 cut(s)	150, 204, 269
EclXI	CGGCCG	2 cut(s)	54, 288
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	67, 269
Eco52I	CGGCCG	2 cut(s)	54, 288
Eco81I	CCTNAGG	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	134, 432
FaeI	CATG	2 cut(s)	67, 565
FaiI	YATR	7 cut(s)	65, 315, 360, 465, 540, 542, 563
FatI	CATG	2 cut(s)	63, 561
FauI	CCCGC	2 cut(s)	123, 244
Fnu4HI	GCNGC	4 cut(s)	51, 54, 163, 166
Fsp4HI	GCNGC	4 cut(s)	51, 54, 163, 166
GluI	GCNGC	4 cut(s)	51, 54, 163, 166
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	6 cut(s)	56, 104, 134, 290, 334, 636
HgaI	GACGC	2 cut(s)	125, 179
Hin1II	CATG	2 cut(s)	67, 565
HinfI	GANTC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	273, 403
Hpy188III	TCNNGA	3 cut(s)	388, 523, 654
Hpy99I	CGWCG	3 cut(s)	20, 119, 173
HpyAV	CCTTC	4 cut(s)	178, 230, 385, 636
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 382, 587, 633
HpyF3I	CTNAG	3 cut(s)	126, 402, 592
Hsp92II	CATG	2 cut(s)	67, 565
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	340, 535, 650
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	500
LweI	GCATC	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	342, 537, 652
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	3 cut(s)	340, 535, 650
MboII	GAAGA	9 cut(s)	152, 155, 164, 167, 187, 190, 221, 286, 506
MlsI	TGGCCA	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	334
MnlI	CCTC	7 cut(s)	52, 94, 184, 187, 241, 419, 614
Mox20I	TGGCCA	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	334
MseI	TTAA	2 cut(s)	345, 351
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	50, 206
MspR9I	CCNGG	2 cut(s)	136, 434
MvaI	CCWGG	2 cut(s)	136, 434
MvnI	CGCG	2 cut(s)	50, 173
MwoI	GCNNNNNNNGC	4 cut(s)	26, 382, 587, 633
NdeII	GATC	3 cut(s)	340, 535, 650
NlaIII	CATG	2 cut(s)	67, 565
NlaIV	GGNNCC	3 cut(s)	270, 452, 502
NmeAIII	GCCGAG	2 cut(s)	55, 82
NmuCI	GTSAC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	52, 55, 164, 167
PshAI	GACNNNNGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	134, 432
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	134, 432
PspN4I	GGNNCC	3 cut(s)	270, 452, 502
PspPI	GGNCC	4 cut(s)	67, 103, 132, 269
RseI	CAYNNNNRTG	1 cut(s)	576
SacII	CCGCGG	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	345, 351
SatI	GCNGC	4 cut(s)	51, 54, 163, 166
Sau3AI	GATC	3 cut(s)	340, 535, 650
Sau96I	GGNCC	4 cut(s)	67, 103, 132, 269
ScrFI	CCNGG	2 cut(s)	136, 434
SetI	ASST	5 cut(s)	72, 189, 321, 476, 629
SfaNI	GCATC	1 cut(s)	568
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	2 cut(s)	67, 269
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	134, 432
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	303
TauI	GCSGC	4 cut(s)	53, 56, 165, 168
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	345, 351
Tru9I	TTAA	2 cut(s)	345, 351
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	375, 578
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	67, 269
VspI	ATTAAT	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.