Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Reverse (-)

57389099 .. 57390544

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0441500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGAAGGTATTGCAGGTAGAAGTTTTTTCTGAAGAGAAGATTAAACCATCTTTCCCAACACCCTCTCACCTCAGAACCTTCAAGCTTTCCCTTCTTGATCAGCTCATACCAGCTCCCTATGCTCCCATTATTCTCTTTTATTATCCCATTACTACCATTACCACCACCAAAAGACTAGATGTGCTGAAGGCATCTTTATCCGAGGCCTTGACTGAGTTCTACCCCCTTGCCGGGAAGCTCAAAGATGATGAGCTATCTGTTCAGTGCAACGATGAAGGAGCTGCCTTCATCGAAGCCAGAGTTAAGTCCTTTTCCCTTCACGAGTTTCTCAGCCGTCCTGAACTTTTTGATTCGTTGCTGAACCAATTCCTCCCTGGAAATATTACTCATACGAGTAGTAGCAATTTTATTACAAACATCCAAGCAAATGTGTTCAAGTGCGGTGGCATTGCCATTGGCCTATGCATCTCACACAAGCTCCTTGATGGTGCTGCCTTGTGCACTTTCCTCAAGTCATGGACTGCTATTGGTCGTCGACTAGTATCAGGATCATCGGAGAAAGCAGCAGCACCGCGTATATCCCCCAACTTATTTGCTGCGGCTTCTTTGTTCCCCACAAATGGCGATCTGTGGCTTAGAGATTCCTCTCTTCACATGTGGGGCTCCTTGTTCATAAAAGGCAAGGAGTCTAGTGTCACAAAAAGATTTGTGTTTGATGCCTCGGCTATAGCCACCCTCAAGCTCAACACTCGAATGGCTCGAAAGAAACCACCCACGCGCGTTGAGGTGGTTACGGCTTTCTTGTGGCAGTGCTGCATGGCTGTCTCTAAAGAGAAACATGGTGTCCAAAGGCCTTCACTGCTGACACATATTGTGAACCTCCGCTCAAAACTACGGACTGCAATGGATGATTCCGATTCCGATTCTGATCTTGAGCACTCCACCGGAAACCTCATTTGGATGGCAGCCGCACGATCTTATATCGGAGATGTCGATGATGATGGTGATGATGAGGAGGAGGAGCAGCAGCAGAACTTGGTCTTGCCAGGCTTGGTGAGTGAGTTGAGTAATGCATTGTCGAAGATTGATGCTGATTTTGCCAAAGAAATCCGAGGGAAGCAAGGGAAGTCTCTATTGATTGATTCTCTGGAGGGAATCATGAACAGTGATGGGTTGGATTTAGATTATTATGGGTTTAGCAGTTGGTGCAAGTTTGGGTGGTACGAAGCTGCTGATTTTGGGTGGGGGAAGCCTGCATGGGTGAGCAGCATTGGTTCCAGTAGTGCTCCTCATTTCATGAATCTGATCATTTTGGTGGACACAAAGTCCGGTGACGGAATCGAAGCATGGGTCACCTTGGATCAGCATCAGATGGCTCTACTGGAAGGCAACTCCAACCTTCAGAAATTGGTTTCAGTGGATCCTAGTCCTTTGATCTTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

481

Amino Acids

53.05

Weight (kDa)

5.56

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 464	2.1e-70	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	885
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	3 cut(s)	574, 778, 780
AciI	CCGC	5 cut(s)	441, 572, 599, 883, 969
AclWI	GGATC	4 cut(s)	556, 1368, 1415, 1428
AcuI	CTGAAG	3 cut(s)	51, 206, 1385
AfaI	GTAC	1 cut(s)	1223
AfiI	CCNNNNNNNGG	3 cut(s)	230, 231, 620
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	2 cut(s)	82, 436
AhdI	GACNNNNNGTC	1 cut(s)	1324
AhlI	ACTAGT	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	373, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	940, 972
AluBI	AGCT	9 cut(s)	85, 103, 113, 238, 253, 281, 478, 742, 1229
AluI	AGCT	9 cut(s)	85, 103, 113, 238, 253, 281, 478, 742, 1229
Alw21I	GWGCWC	3 cut(s)	503, 939, 1288
Alw26I	GTCTC	2 cut(s)	829, 1134
Alw44I	GTGCAC	1 cut(s)	499
AlwI	GGATC	4 cut(s)	556, 1368, 1415, 1428
AoxI	GGCC	3 cut(s)	204, 457, 851
ApaLI	GTGCAC	1 cut(s)	499
ArsI	GACNNNNNNTTYG	2 cut(s)	1335, 1367
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	780
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	6 cut(s)	59, 1016, 1066, 1273, 1343, 1345
BaeGI	GKGCMC	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	1420
BanII	GRGCYC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	3 cut(s)	503, 939, 1288
BccI	CCATC	6 cut(s)	55, 479, 955, 995, 1163, 1366
BceAI	ACGGC	2 cut(s)	318, 810
BciT130I	CCWGG	2 cut(s)	375, 1047
BclI	TGATCA	2 cut(s)	97, 1305
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	829, 1134
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	4 cut(s)	176, 539, 690, 1425
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	4
Bme1390I	CCNGG	3 cut(s)	232, 375, 1047
BmeRI	GACNNNNNGTC	1 cut(s)	1324
BmiI	GGNNCC	3 cut(s)	664, 1276, 1422
BmrFI	CCNGG	3 cut(s)	232, 375, 1047
BmsI	GCATC	5 cut(s)	200, 474, 706, 1078, 1375
BpmI	CTGGAG	1 cut(s)	1169
BpuEI	CTTGAG	3 cut(s)	494, 722, 953
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	2 cut(s)	927, 1365
BsaJI	CCNNGG	5 cut(s)	201, 373, 720, 1111, 1356
BsaWI	WCCGGW	2 cut(s)	944, 1328
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 231, 620
Bse1I	ACTGG	2 cut(s)	1278, 1386
Bse3DI	GCAATG	2 cut(s)	447, 909
Bse8I	GATNNNNATC	2 cut(s)	927, 1365
BseBI	CCWGG	2 cut(s)	375, 1047
BseDI	CCNNGG	5 cut(s)	201, 373, 720, 1111, 1356
BseGI	GGATG	3 cut(s)	417, 913, 966
BseJI	GATNNNNATC	2 cut(s)	927, 1365
BseLI	CCNNNNNNNGG	3 cut(s)	230, 231, 620
BseMI	GCAATG	2 cut(s)	447, 909
BseMII	CTCAG	3 cut(s)	85, 204, 343
BseNI	ACTGG	2 cut(s)	1278, 1386
BseRI	GAGGAG	4 cut(s)	1028, 1031, 1034, 1278
BseSI	GKGCMC	1 cut(s)	503
Bsh1236I	CGCG	3 cut(s)	574, 778, 780
BshFI	GGCC	3 cut(s)	206, 459, 853
BsiHKAI	GWGCWC	3 cut(s)	503, 939, 1288
BsiSI	CCGG	3 cut(s)	231, 945, 1329
BslI	CCNNNNNNNGG	3 cut(s)	230, 231, 620
BsmAI	GTCTC	2 cut(s)	829, 1134
BsnI	GGCC	3 cut(s)	206, 459, 853
Bsp1286I	GDGCHC	4 cut(s)	503, 665, 939, 1288
Bsp143I	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
BspACI	CCGC	5 cut(s)	441, 572, 599, 883, 969
BspANI	GGCC	3 cut(s)	206, 459, 853
BspCNI	CTCAG	3 cut(s)	84, 205, 342
BspFNI	CGCG	3 cut(s)	574, 778, 780
BspHI	TCATGA	2 cut(s)	1158, 1296
BspLI	GGNNCC	3 cut(s)	664, 1276, 1422
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	4 cut(s)	556, 1368, 1415, 1428
BsrBI	CCGCTC	1 cut(s)	885
BsrDI	GCAATG	2 cut(s)	447, 909
BsrI	ACTGG	2 cut(s)	1278, 1386
BssECI	CCNNGG	5 cut(s)	201, 373, 720, 1111, 1356
BssMI	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	1356
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	375, 1047
Bst4CI	ACNGT	1 cut(s)	1166
Bst6I	CTCTTC	2 cut(s)	27, 654
BstAPI	GCANNNNNTGC	1 cut(s)	1206
BstC8I	GCNNGC	1 cut(s)	1254
BstDEI	CTNAG	4 cut(s)	71, 213, 329, 635
BstEII	GGTNACC	1 cut(s)	1351
BstF5I	GGATG	3 cut(s)	417, 913, 966
BstFNI	CGCG	3 cut(s)	574, 778, 780
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	9 cut(s)	100, 551, 628, 931, 977, 1308, 1363, 1423, 1437
BstMAI	GTCTC	2 cut(s)	829, 1134
BstMBI	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 859, 1097, 1206
BstNI	CCWGG	2 cut(s)	375, 1047
BstNSI	RCATGY	1 cut(s)	658
BstPI	GGTNACC	1 cut(s)	1351
BstSCI	CCNGG	3 cut(s)	230, 373, 1045
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	3 cut(s)	574, 778, 780
BstX2I	RGATCY	1 cut(s)	1420
BstYI	RGATCY	1 cut(s)	1420
BsuRI	GGCC	3 cut(s)	206, 459, 853
BtsCI	GGATG	3 cut(s)	417, 913, 966
BtsI	GCAGTG	2 cut(s)	815, 857
BtsIMutI	CAGTG	5 cut(s)	269, 815, 857, 1171, 1422
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	1254
CciI	TCATGA	2 cut(s)	1158, 1296
CfoI	GCGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	1222
CspCI	CAANNNNNGTGG	4 cut(s)	424, 459, 763, 798
CviAII	CATG	8 cut(s)	516, 655, 817, 839, 1159, 1257, 1297, 1347
CviQI	GTAC	1 cut(s)	1222
DdeI	CTNAG	4 cut(s)	71, 213, 329, 635
DpnI	GATC	9 cut(s)	99, 550, 627, 930, 976, 1307, 1362, 1422, 1436
DpnII	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
DriI	GACNNNNNGTC	1 cut(s)	1324
Eam1104I	CTCTTC	2 cut(s)	27, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	1324
EarI	CTCTTC	2 cut(s)	27, 654
Eco130I	CCWWGG	1 cut(s)	1356
Eco147I	AGGCCT	2 cut(s)	206, 853
Eco24I	GRGCYC	1 cut(s)	665
Eco57I	CTGAAG	3 cut(s)	51, 206, 1385
Eco91I	GGTNACC	1 cut(s)	1351
EcoO65I	GGTNACC	1 cut(s)	1351
EcoRII	CCWGG	2 cut(s)	373, 1045
EcoT14I	CCWWGG	1 cut(s)	1356
EcoT22I	ATGCAT	2 cut(s)	467, 1075
EcoT38I	GRGCYC	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	1356
FaeI	CATG	8 cut(s)	519, 658, 820, 842, 1162, 1260, 1300, 1350
FatI	CATG	8 cut(s)	515, 654, 816, 838, 1158, 1256, 1296, 1346
FbaI	TGATCA	2 cut(s)	97, 1305
FblI	GTMKAC	1 cut(s)	535
FokI	GGATG	3 cut(s)	404, 920, 973
FriOI	GRGCYC	1 cut(s)	665
FspBI	CTAG	4 cut(s)	176, 539, 690, 1425
GlaI	GCGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	3 cut(s)	206, 459, 853
HapII	CCGG	3 cut(s)	231, 945, 1329
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	8 cut(s)	519, 658, 820, 842, 1162, 1260, 1300, 1350
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	83
HpaII	CCGG	3 cut(s)	231, 945, 1329
HphI	GGTGA	6 cut(s)	59, 1016, 1066, 1273, 1343, 1345
Hpy166II	GTNNAC	4 cut(s)	501, 536, 877, 1318
Hpy188III	TCNNGA	8 cut(s)	95, 320, 338, 546, 932, 1148, 1159, 1297
Hpy8I	GTNNAC	4 cut(s)	501, 536, 877, 1318
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	9 cut(s)	88, 101, 181, 269, 295, 326, 864, 1379, 1409
HpyCH4III	ACNGT	1 cut(s)	1166
HpyCH4V	TGCA	9 cut(s)	13, 267, 465, 501, 816, 902, 1073, 1209, 1256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 859, 1097, 1206
HpyF3I	CTNAG	4 cut(s)	71, 213, 329, 635
Hsp92II	CATG	8 cut(s)	519, 658, 820, 842, 1162, 1260, 1300, 1350
HspAI	GCGC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	97, 1305
Kzo9I	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
LmnI	GCTCC	7 cut(s)	118, 127, 278, 483, 668, 1021, 1291
LweI	GCATC	5 cut(s)	200, 474, 706, 1078, 1375
MaeI	CTAG	4 cut(s)	176, 539, 690, 1425
MaeIII	GTNAC	4 cut(s)	694, 790, 1331, 1351
MalI	GATC	9 cut(s)	99, 550, 627, 930, 976, 1307, 1362, 1422, 1436
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
MboII	GAAGA	4 cut(s)	44, 49, 641, 1093
MflI	RGATCY	1 cut(s)	1420
MhlI	GDGCHC	4 cut(s)	503, 665, 939, 1288
MluCI	AATT	4 cut(s)	365, 403, 1406, 1441
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	1155, 1419
Mph1103I	ATGCAT	2 cut(s)	467, 1075
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	4 cut(s)	42, 303, 1439, 1444
MslI	CAYNNNNRTG	3 cut(s)	752, 959, 1313
MspI	CCGG	3 cut(s)	231, 945, 1329
MspR9I	CCNGG	3 cut(s)	232, 375, 1047
MvaI	CCWGG	2 cut(s)	375, 1047
MvnI	CGCG	3 cut(s)	574, 778, 780
MwoI	GCNNNNNNNGC	4 cut(s)	119, 859, 1097, 1206
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
NlaIII	CATG	8 cut(s)	519, 658, 820, 842, 1162, 1260, 1300, 1350
NlaIV	GGNNCC	3 cut(s)	664, 1276, 1422
NmeAIII	GCCGAG	1 cut(s)	701
NmuCI	GTSAC	3 cut(s)	694, 1331, 1351
NsiI	ATGCAT	2 cut(s)	467, 1075
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	2 cut(s)	1158, 1296
PceI	AGGCCT	2 cut(s)	206, 853
PciI	ACATGT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	2 cut(s)	757, 990
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	9 cut(s)	350, 641, 911, 917, 923, 1142, 1155, 1300, 1338
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	373, 1045
PspEI	GGTNACC	1 cut(s)	1351
PspGI	CCWGG	2 cut(s)	373, 1045
PspN4I	GGNNCC	3 cut(s)	664, 1276, 1422
PsuI	RGATCY	1 cut(s)	1420
RsaI	GTAC	1 cut(s)	1223
RsaNI	GTAC	1 cut(s)	1222
RseI	CAYNNNNRTG	3 cut(s)	752, 959, 1313
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	42, 303, 1439, 1444
Sau3AI	GATC	9 cut(s)	97, 548, 625, 928, 974, 1305, 1360, 1420, 1434
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	3 cut(s)	232, 375, 1047
SduI	GDGCHC	4 cut(s)	503, 665, 939, 1288
SfaNI	GCATC	5 cut(s)	200, 474, 706, 1078, 1375
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	3 cut(s)	752, 959, 1313
SmlI	CTYRAG	3 cut(s)	509, 737, 932
SmoI	CTYRAG	3 cut(s)	509, 737, 932
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	4 cut(s)	365, 403, 1406, 1441
SseBI	AGGCCT	2 cut(s)	206, 853
SsiI	CCGC	5 cut(s)	441, 572, 599, 883, 969
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	4 cut(s)	176, 539, 690, 1425
StuI	AGGCCT	2 cut(s)	206, 853
StyD4I	CCNGG	3 cut(s)	230, 373, 1045
StyI	CCWWGG	1 cut(s)	1356
TaaI	ACNGT	1 cut(s)	1166
TaqI	TCGA	7 cut(s)	291, 535, 751, 760, 993, 1079, 1341
TasI	AATT	4 cut(s)	365, 403, 1406, 1441
TauI	GCSGC	2 cut(s)	602, 971
TfiI	GAWTC	9 cut(s)	350, 641, 911, 917, 923, 1142, 1155, 1300, 1338
Tru1I	TTAA	4 cut(s)	42, 303, 1439, 1444
Tru9I	TTAA	4 cut(s)	42, 303, 1439, 1444
TscAI	CASTG	5 cut(s)	269, 815, 864, 1171, 1422
TseFI	GTSAC	3 cut(s)	694, 1331, 1351
Tsp45I	GTSAC	3 cut(s)	694, 1331, 1351
TspDTI	ATGAA	7 cut(s)	17, 277, 288, 661, 1175, 1285, 1313
TspGWI	ACGGA	2 cut(s)	910, 1350
TspRI	CASTG	5 cut(s)	269, 815, 864, 1171, 1422
VneI	GTGCAC	1 cut(s)	499
XceI	RCATGY	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	4 cut(s)	176, 539, 690, 1425
Zsp2I	ATGCAT	2 cut(s)	467, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.