Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Forward (+)

2708542 .. 2710476

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAGAGGCAACCGTCGCTGAGACCAACACCAACACCGCGGCGGCCGAGGACATGGACCTCGAAACCGCCCCGGCCCAAAACCCAGACGAGGCCCAGAACGGCGACGCAAACTCTAAGCGGGCCAGGGAGGAAGAAGAAGAAGAGAGCGGCGGCGACGCGAAGAAGACGAAGGTGGTGGAGGAGAAGTCAGCGGAAGAGCAACGGTTGGAGAAGTTAGGGGAAGGAGAGAGCGAGGCGGGTCGGGTCATCTTGGGTCCGAAGAGTTTCGGGTCGGCCGTTGAGATGTTTGACTATTTCTATAAGCTACTCCATTACTGGCCAACTGATCTTAATATTAATAAGTATGAATATCTGGTTTTGCTGGACTTGCTCAAGAAGGGTCACTCTGAGCCTGATAAAAAGATTGGTGGAGGAATCCAGGCTTTCCAAGTTCGGTTCCACCCATTGTATAGAAGTAGGTGCTACTTCCTTGTTAGAGAAGATGGAGCCAGTGATGATTTTAGTTTCAGGAAGTGTGTGGATCATATACTTCCTTTGCCAGAGAACATGAAAGCACACGCTGATGCCAACAAAGCCTTAGGCGGTGGCAAGGGTGGTGGGGGGAGAGGAAGCTGGCGTGGCCGTGGAAGGGGCAGGTCAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

216

Amino Acids

23.91

Weight (kDa)

5.52

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3223	PF11523	102 - 174	2.2e-25	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	2 cut(s)	41, 161
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	4 cut(s)	45, 276, 320, 622
AfiI	CCNNNNNNNGG	2 cut(s)	91, 631
AjnI	CCWGG	2 cut(s)	125, 420
AluBI	AGCT	2 cut(s)	307, 615
AluI	AGCT	2 cut(s)	307, 615
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	7 cut(s)	45, 75, 93, 123, 276, 320, 622
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	5 cut(s)	58, 76, 94, 123, 257
AsuC2I	CCSGG	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	58, 257
AxyI	CCTNAGG	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	173
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	3 cut(s)	118, 263, 609
BciT130I	CCWGG	2 cut(s)	127, 422
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	627
BisI	GCNGC	4 cut(s)	42, 45, 151, 154
BlsI	GCNGC	4 cut(s)	43, 46, 152, 155
Bme1390I	CCNGG	3 cut(s)	74, 127, 422
Bme18I	GGWCC	2 cut(s)	58, 257
BmgT120I	GGNCC	5 cut(s)	58, 76, 94, 123, 257
BmiI	GGNNCC	3 cut(s)	258, 440, 490
BmrFI	CCNGG	3 cut(s)	74, 127, 422
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	39, 48, 72, 126, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 631
Bse1I	ACTGG	2 cut(s)	323, 492
Bse21I	CCTNAGG	1 cut(s)	580
BseBI	CCWGG	2 cut(s)	127, 422
BseDI	CCNNGG	5 cut(s)	39, 48, 72, 126, 625
BseLI	CCNNNNNNNGG	2 cut(s)	91, 631
BseMII	CTCAG	2 cut(s)	12, 381
BseNI	ACTGG	2 cut(s)	323, 492
BseRI	GAGGAG	1 cut(s)	197
BseX3I	CGGCCG	2 cut(s)	45, 276
Bsh1236I	CGCG	2 cut(s)	41, 161
Bsh1285I	CGRYCG	2 cut(s)	48, 279
BshFI	GGCC	7 cut(s)	47, 77, 95, 125, 278, 322, 624
BsiEI	CGRYCG	2 cut(s)	48, 279
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	91, 631
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	7 cut(s)	47, 77, 95, 125, 278, 322, 624
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	328, 523
BspANI	GGCC	7 cut(s)	47, 77, 95, 125, 278, 322, 624
BspCNI	CTCAG	2 cut(s)	13, 382
BspFNI	CGCG	2 cut(s)	41, 161
BspLI	GGNNCC	3 cut(s)	258, 440, 490
BspMI	ACCTGC	1 cut(s)	627
BspPI	GGATC	1 cut(s)	531
BspQI	GCTCTTC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	323, 492
BssECI	CCNNGG	5 cut(s)	39, 48, 72, 126, 625
BssMI	GATC	2 cut(s)	328, 523
Bst2UI	CCWGG	2 cut(s)	127, 422
Bst4CI	ACNGT	2 cut(s)	16, 207
Bst6I	CTCTTC	3 cut(s)	138, 192, 257
BstC8I	GCNNGC	2 cut(s)	123, 617
BstDEI	CTNAG	4 cut(s)	21, 117, 390, 580
BstDSI	CCRYGG	2 cut(s)	39, 625
BstFNI	CGCG	2 cut(s)	41, 161
BstKTI	GATC	2 cut(s)	331, 526
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	328, 523
BstMCI	CGRYCG	2 cut(s)	48, 279
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 370, 575, 621
BstNI	CCWGG	2 cut(s)	127, 422
BstSCI	CCNGG	3 cut(s)	72, 125, 420
BstUI	CGCG	2 cut(s)	41, 161
BstV2I	GAAGAC	1 cut(s)	173
BstZI	CGGCCG	2 cut(s)	45, 276
Bsu36I	CCTNAGG	1 cut(s)	580
BsuRI	GGCC	7 cut(s)	47, 77, 95, 125, 278, 322, 624
BtgI	CCRYGG	2 cut(s)	39, 625
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	123, 617
Cfr13I	GGNCC	5 cut(s)	58, 76, 94, 123, 257
Cfr42I	CCGCGG	1 cut(s)	42
CseI	GACGC	2 cut(s)	116, 167
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	2 cut(s)	55, 550
DdeI	CTNAG	4 cut(s)	21, 117, 390, 580
DpnI	GATC	2 cut(s)	330, 525
DpnII	GATC	2 cut(s)	328, 523
EaeI	YGGCCR	4 cut(s)	45, 276, 320, 622
EagI	CGGCCG	2 cut(s)	45, 276
Eam1104I	CTCTTC	3 cut(s)	138, 192, 257
EarI	CTCTTC	3 cut(s)	138, 192, 257
EclXI	CGGCCG	2 cut(s)	45, 276
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	58, 257
Eco52I	CGGCCG	2 cut(s)	45, 276
Eco81I	CCTNAGG	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	125, 420
FaeI	CATG	2 cut(s)	58, 553
FaiI	YATR	7 cut(s)	56, 303, 348, 453, 528, 530, 551
FatI	CATG	2 cut(s)	54, 549
FauI	CCCGC	2 cut(s)	114, 232
Fnu4HI	GCNGC	4 cut(s)	42, 45, 151, 154
Fsp4HI	GCNGC	4 cut(s)	42, 45, 151, 154
GluI	GCNGC	4 cut(s)	42, 45, 151, 154
HaeIII	GGCC	7 cut(s)	47, 77, 95, 125, 278, 322, 624
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	2 cut(s)	116, 167
Hin1II	CATG	2 cut(s)	58, 553
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	261, 391
Hpy188III	TCNNGA	3 cut(s)	376, 511, 642
Hpy99I	CGWCG	3 cut(s)	20, 110, 161
HpyAV	CCTTC	4 cut(s)	166, 218, 373, 624
HpyCH4III	ACNGT	2 cut(s)	16, 207
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 370, 575, 621
HpyF3I	CTNAG	4 cut(s)	21, 117, 390, 580
Hsp92II	CATG	2 cut(s)	58, 553
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	328, 523
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	488
LweI	GCATC	1 cut(s)	556
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	330, 525
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	328, 523
MboII	GAAGA	9 cut(s)	146, 149, 152, 155, 175, 178, 209, 274, 494
MlsI	TGGCCA	1 cut(s)	322
MluNI	TGGCCA	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	43, 71, 85, 124, 175, 229, 407, 602
Mox20I	TGGCCA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	2 cut(s)	333, 339
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	41, 194
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	3 cut(s)	74, 127, 422
MvaI	CCWGG	2 cut(s)	127, 422
MvnI	CGCG	2 cut(s)	41, 161
MwoI	GCNNNNNNNGC	4 cut(s)	17, 370, 575, 621
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	328, 523
NlaIII	CATG	2 cut(s)	58, 553
NlaIV	GGNNCC	3 cut(s)	258, 440, 490
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	43, 46, 152, 155
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	125, 420
PspGI	CCWGG	2 cut(s)	125, 420
PspN4I	GGNNCC	3 cut(s)	258, 440, 490
PspPI	GGNCC	5 cut(s)	58, 76, 94, 123, 257
RseI	CAYNNNNRTG	1 cut(s)	564
SacII	CCGCGG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	333, 339
SatI	GCNGC	4 cut(s)	42, 45, 151, 154
Sau3AI	GATC	2 cut(s)	328, 523
Sau96I	GGNCC	5 cut(s)	58, 76, 94, 123, 257
ScrFI	CCNGG	3 cut(s)	74, 127, 422
SetI	ASST	6 cut(s)	63, 177, 309, 464, 617, 641
SfaNI	GCATC	1 cut(s)	556
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	58, 257
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SspI	AATATT	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	72, 125, 420
TaaI	ACNGT	2 cut(s)	16, 207
TaqI	TCGA	1 cut(s)	63
TauI	GCSGC	4 cut(s)	44, 47, 153, 156
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	333, 339
Tru9I	TTAA	2 cut(s)	333, 339
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	363, 566
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	58, 257
VspI	ATTAAT	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.